
                     ------------------------------------------------------
                                 Cluster analysis in Variables space
                     ------------------------------------------------------


          Metric multidimensional scaling for 40 hits
          -------------------------------------------

 All eigenvalues less than 0.0 are set to 0.0

 There are approximately 10 clusters

    n  Eigenvalue  Cumulative proportion  Change

    1   3.96118           0.28452         0.00000
    2   2.52456           0.46585         0.36267
    3   2.00053           0.60954         0.20757
    4   1.52280           0.71892         0.23880
    5   0.94163           0.78655         0.38165
    6   0.69676           0.83659         0.26004
    7   0.56186           0.87695         0.19362
    8   0.49207           0.91229         0.12421
    9   0.30756           0.93438         0.37497
   10   0.26114           0.95314         0.15091
   11   0.20949           0.96819         0.19780
   12   0.12178           0.97694         0.41870

 The Pearson correlation coefficient between observed and calculated distance matrices is 0.822
 The probability of this occuring by chance is  0.000
 The Spearman correlation coefficient between observed and calculated distance matrices is 0.817
 The probability of this occuring by chance is  0.000

 MMDS complete.

 Current cpu time is   120.86s

                    Dendrogram generation for 40 hits
                    ---------------------------------

 Program will use the group average link method.    

 Top 40 amalgamation steps:

 Clusters joined  Similarity level   Minimum distance   Number of clusters  Sum of squares  Similarity   n1   n2
       6      13    100.0000               0.0000             39              338.108        100.00000    1    1
       6      25    100.0000               0.0000             38              321.967        100.00000    2    1
      18      23    100.0000               0.0000             37              305.828        100.00000    1    1
      18      30    100.0000               0.0000             36              288.001        100.00000    2    1
       1      28     96.5000               0.0350             35              270.211        100.00000    1    1
       4      27     94.6000               0.0540             34              259.309         96.50000    1    1
      12      22     94.5000               0.0550             33              242.240         94.60000    1    1
      21      36     94.5000               0.0550             32              228.956         94.50000    1    1
       1      15     94.3000               0.0570             31              218.310         94.50000    2    1
       4      32     93.3000               0.0670             30              207.385         94.30000    2    1
      33      39     92.9000               0.0710             29              191.322         93.30000    1    1
       4      14     92.6667               0.0733             28              177.944         92.90000    3    1
      17      19     92.5000               0.0750             27              163.349         92.66666    1    1
       3       7     91.1000               0.0890             26              152.747         92.50000    1    1
      17      26     90.0500               0.0995             25              143.077         91.10000    2    1
       1       5     89.8333               0.1017             24              132.706         90.05000    3    1
      11      12     89.5500               0.1045             23              123.732         89.83334    1    2
       3      40     88.6500               0.1135             22              113.321         89.55000    2    1
      10      20     88.4000               0.1160             21              104.736         88.65000    1    1
       1      16     84.6750               0.1532             20               94.791         88.40000    4    1
      11      37     82.2000               0.1780             19               87.146         84.67500    3    1
      31      38     80.1000               0.1990             18               78.866         82.20000    1    1
       4      10     79.6250               0.2037             17               69.955         80.10000    4    2
      17      24     78.3667               0.2163             16               61.288         79.62500    3    1
      11      29     77.8000               0.2220             15               54.994         78.36667    4    1
       1      21     77.6800               0.2232             14               48.636         77.80000    5    2
       6       8     74.9000               0.2510             13               42.686         77.68000    3    1
      31      33     71.4250               0.2858             12               36.988         74.90000    2    2
       6      17     70.0500               0.2995             11               31.115         71.42500    4    4
       2       4     67.5167               0.3248             10               26.415         70.05000    1    6
       3      11     66.6533               0.3335              9               22.121         67.51667    3    5
       1       2     63.9408               0.3606              8               18.325         66.65334    7    7
       6      18     58.1875               0.4181              7               14.317         63.94081    8    3
      31      34     53.2250               0.4677              6               11.181         58.18750    4    1
       1       9     53.1143               0.4689              5                7.937         53.22500   14    1
       3       6     45.8307               0.5417              4                5.403         53.11428    8   11
       3      31     31.0011               0.6900              3                3.453         45.83068   19    5
       1       3     25.3961               0.7460              2                1.804         31.00105   15   24
       1      35     21.0821               0.7892              1                0.623         25.39611   39    1
 The dendrogram cut point is set at  0.32915

 Dendrogram analysis complete

 Current cpu time is   120.88s


             Generation of silhouettes
             -------------------------

           Hit no.  Cluster Silhouette
                7      4      0.820
                3      4      0.807
               40      4      0.766
            ~~~~~~~~~~~~~~~~~~~~~~~~~
               39      5      0.642
               33      5      0.634
               31      5      0.544
               38      5      0.508
            ~~~~~~~~~~~~~~~~~~~~~~~~~
               12      6      0.823
               22      6      0.806
               37      6      0.692
               11      6      0.630
               29      6      0.607
            ~~~~~~~~~~~~~~~~~~~~~~~~~
               27      7      0.806
                4      7      0.765
               32      7      0.736
               14      7      0.717
               20      7      0.639
               10      7      0.528
                2      7      0.453 *
            ~~~~~~~~~~~~~~~~~~~~~~~~~
                1      8      0.822
               15      8      0.809
                5      8      0.787
               21      8      0.753
               28      8      0.731
               16      8      0.702
               36      8      0.626
            ~~~~~~~~~~~~~~~~~~~~~~~~~
               17     10      0.732
                6     10      0.655
               13     10      0.648
               25     10      0.640
               19     10      0.607
               26     10      0.589
                8     10      0.526
               24     10      0.460 *
            ~~~~~~~~~~~~~~~~~~~~~~~~~
 Possible problem entries are flagged with an asterix (*)


 Silhouettes complete.

 Current cpu time is   120.88s
 User name is: andrewp                       
 Hostname is: BAHEIJ                        

 Log file closed at local time: 18:36:48 and date: 16-Feb-2006
 (The time difference with respect to GMT (UTC) is:   +0 minutes.)

 ----------------------------------------------------------------------------------------------------


Original dendrogram saved as C:\_andy\_papers\dsnap_2\new\results\a\ab\abb\Variables\dendrogram_original.dat

Initial Program group assignments

Listing group members...

The current clusters at cut-level 0.671:

Group A (7):
Sample #     1:	ANG1        
Sample #    28:	ANG7        
Sample #    15:	ANG22       
Sample #     5:	ANG13       
Sample #    16:	ANG23       
Sample #    21:	ANG28       
Sample #    36:	DIST5       

Group B (7):
Sample #     2:	ANG10       
Sample #     4:	ANG12       
Sample #    27:	ANG6        
Sample #    32:	DIST10      
Sample #    14:	ANG21       
Sample #    10:	ANG18       
Sample #    20:	ANG27       

Group C (1):
Sample #     9:	ANG17       

Group D (3):
Sample #     3:	ANG11       
Sample #     7:	ANG15       
Sample #    40:	DIST9       

Group E (5):
Sample #    11:	ANG19       
Sample #    12:	ANG2        
Sample #    22:	ANG29       
Sample #    37:	DIST6       
Sample #    29:	ANG8        

Group F (8):
Sample #     6:	ANG14       
Sample #    25:	ANG4        
Sample #    13:	ANG20       
Sample #     8:	ANG16       
Sample #    17:	ANG24       
Sample #    19:	ANG26       
Sample #    26:	ANG5        
Sample #    24:	ANG30       

Group G (3):
Sample #    18:	ANG25       
Sample #    23:	ANG3        
Sample #    30:	ANG9        

Group H (4):
Sample #    31:	DIST1       
Sample #    38:	DIST7       
Sample #    33:	DIST2       
Sample #    39:	DIST8       

Group I (1):
Sample #    34:	DIST3       

Group J (1):
Sample #    35:	DIST4       




           Plot of DIST9 against DIST6

           Intercept =   0.78439 slope=    0.71230
           with standard errors of    0.36125   0.13349 respectively.
           Correlation coefficient =    0.78273

           Data points are:

             2.75800   2.71400         1     AKENOT      
             2.72300   2.75600         2     AKENUZ      
             2.79400   2.73800         3     ANSALB_03   
             2.67000   2.67000         4     BEJSEO      
             2.70200   2.70200         5     DEPKUE      
             2.75900   2.76400         6     DEPLAL      
             2.64900   2.64900         7     IWOLUB      
             2.65900   2.65900         8     MAHXUP      
             2.65900   2.65900         9     MAHZUR      
             2.68300   2.73600        10     OCAROZ      
             2.69600   2.71300        11     PAJHUE      
             2.69200   2.69700        12     RAFZOO      
             2.73700   2.75600        13     TONPAN      
             2.66300   2.67400        14     XAZMEQ      
             2.71500   2.72300        15     XEDBEN      
             2.69600   2.73800        16     XEDBUD_01   
             2.70900   2.72500        17     XEDBUD_02   
             2.72900   2.73300        18     XEDCEO      
             2.73300   2.73300        19     XEDCOY_01   
             2.69200   2.69700        20     XEDCOY_02   


           Plot of DIST10 against DIST5

           Intercept =   3.80317 slope=   -0.49863
           with standard errors of    0.40837   0.14881 respectively.
           Correlation coefficient =   -0.61979

           Data points are:

             2.73000   2.41700         1     AKENOT      
             2.73200   2.40600         2     AKENUZ      
             2.75100   2.49500         3     ANSALB_03   
             2.75800   2.46200         4     BEJSEO      
             2.83400   2.33200         5     DEPKUE      
             2.78700   2.45700         6     DEPLAL      
             2.72600   2.42900         7     IWOLUB      
             2.77100   2.44100         8     MAHXUP      
             2.76200   2.43900         9     MAHZUR      
             2.68400   2.46800        10     OCAROZ      
             2.73600   2.44900        11     PAJHUE      
             2.70800   2.43200        12     RAFZOO      
             2.69300   2.44600        13     TONPAN      
             2.72200   2.47400        14     XAZMEQ      
             2.84100   2.38100        15     XEDBEN      
             2.78000   2.40800        16     XEDBUD_01   
             2.70200   2.42500        17     XEDBUD_02   
             2.68700   2.49000        18     XEDCEO      
             2.67800   2.44600        19     XEDCOY_01   
             2.79300   2.40400        20     XEDCOY_02   


           Plot of ANG9 against DIST2

           Intercept =   5.73977 slope=   -0.27951
           with standard errors of   30.68041  16.21861 respectively.
           Correlation coefficient =   -0.00406

           Data points are:

             1.88700   5.20800         1     AKENOT      
             1.86800   7.56800         2     AKENUZ      
             1.97500   1.48600         3     ANSALB_03   
             1.87100   3.13600         4     BEJSEO      
             1.90100   5.39100         5     DEPKUE      
             1.95800   9.91000         6     DEPLAL      
             1.85200   3.11100         7     IWOLUB      
             1.87600   3.16300         8     MAHXUP      
             1.87100   3.18100         9     MAHZUR      
             1.87600   6.35500        10     OCAROZ      
             1.90100   3.87700        11     PAJHUE      
             1.87700   4.08200        12     RAFZOO      
             1.88900   5.46900        13     TONPAN      
             1.89500   3.79200        14     XAZMEQ      
             1.92100   4.21800        15     XEDBEN      
             1.88500   7.81700        16     XEDBUD_01   
             1.86700   7.55500        17     XEDBUD_02   
             1.88300   6.02000        18     XEDCEO      
             1.87200   6.83800        19     XEDCOY_01   
             1.90400   6.04500        20     XEDCOY_02   


           Plot of DIST1 against DIST2

           Intercept =   0.94806 slope=    0.49208
           with standard errors of    0.18085   0.09560 respectively.
           Correlation coefficient =    0.77165

           Data points are:

             1.88700   1.86400         1     AKENOT      
             1.86800   1.88300         2     AKENUZ      
             1.97500   1.90300         3     ANSALB_03   
             1.87100   1.87100         4     BEJSEO      
             1.90100   1.90100         5     DEPKUE      
             1.95800   1.93800         6     DEPLAL      
             1.85200   1.85200         7     IWOLUB      
             1.87600   1.87600         8     MAHXUP      
             1.87100   1.87100         9     MAHZUR      
             1.87600   1.86600        10     OCAROZ      
             1.90100   1.87500        11     PAJHUE      
             1.87700   1.87200        12     RAFZOO      
             1.88900   1.89100        13     TONPAN      
             1.89500   1.87600        14     XAZMEQ      
             1.92100   1.89400        15     XEDBEN      
             1.88500   1.86600        16     XEDBUD_01   
             1.86700   1.86400        17     XEDBUD_02   
             1.88300   1.88100        18     XEDCEO      
             1.87200   1.87200        19     XEDCOY_01   
             1.90400   1.86000        20     XEDCOY_02   


           Plot of ANG6 against ANG9

           Intercept =  82.98314 slope=   -0.17632
           with standard errors of    0.98050   0.17534 respectively.
           Correlation coefficient =   -0.23063

           Data points are:

             5.20800  80.66200         1     AKENOT      
             7.56800  80.24700         2     AKENUZ      
             1.48600  83.55200         3     ANSALB_03   
             3.13600  82.61100         4     BEJSEO      
             5.39100  78.38500         5     DEPKUE      
             9.91000  82.26500         6     DEPLAL      
             3.11100  82.28700         7     IWOLUB      
             3.16300  82.61800         8     MAHXUP      
             3.18100  82.43400         9     MAHZUR      
             6.35500  83.90700        10     OCAROZ      
             3.87700  82.62800        11     PAJHUE      
             4.08200  82.49400        12     RAFZOO      
             5.46900  82.24200        13     TONPAN      
             3.79200  84.92400        14     XAZMEQ      
             4.21800  79.39400        15     XEDBEN      
             7.81700  80.90300        16     XEDBUD_01   
             7.55500  82.29100        17     XEDBUD_02   
             6.02000  83.95200        18     XEDCEO      
             6.83800  82.70400        19     XEDCOY_01   
             6.04500  80.78600        20     XEDCOY_02   


           Plot of DIST8 against DIST9

           Intercept =   2.58215 slope=    0.42442
           with standard errors of    0.78782   0.29049 respectively.
           Correlation coefficient =    0.32560

           Data points are:

             2.71400   3.71900         1     AKENOT      
             2.75600   3.72900         2     AKENUZ      
             2.73800   3.87800         3     ANSALB_03   
             2.67000   3.73100         4     BEJSEO      
             2.70200   3.73000         5     DEPKUE      
             2.76400   3.81000         6     DEPLAL      
             2.64900   3.69300         7     IWOLUB      
             2.65900   3.71900         8     MAHXUP      
             2.65900   3.71600         9     MAHZUR      
             2.73600   3.69700        10     OCAROZ      
             2.71300   3.75100        11     PAJHUE      
             2.69700   3.71400        12     RAFZOO      
             2.75600   3.74100        13     TONPAN      
             2.67400   3.71700        14     XAZMEQ      
             2.72300   3.77300        15     XEDBEN      
             2.73800   3.69600        16     XEDBUD_01   
             2.72500   3.68000        17     XEDBUD_02   
             2.73300   3.72200        18     XEDCEO      
             2.73300   3.69600        19     XEDCOY_01   
             2.69700   3.75000        20     XEDCOY_02   

Previous dendrogram saved as C:\_andy\_papers\dsnap_2\new\results\a\ab\abb\Variables\dendrogram_modified.dat

User manually changed dendrogram at 16/02/2006 18:51:08
Listing group members...

The current clusters at cut-level 0.671:

Group A (7):
Sample #     1:	ANG1        
Sample #    28:	ANG7        
Sample #    15:	ANG22       
Sample #     5:	ANG13       
Sample #    16:	ANG23       
Sample #    21:	ANG28       
Sample #    36:	DIST5       

Group B (7):
Sample #     2:	ANG10       
Sample #     4:	ANG12       
Sample #    27:	ANG6        
Sample #    32:	DIST10      
Sample #    14:	ANG21       
Sample #    10:	ANG18       
Sample #    20:	ANG27       

Group C (1):
Sample #     9:	ANG17       

Group D (3):
Sample #     3:	ANG11       
Sample #     7:	ANG15       
Sample #    40:	DIST9       

Group E (5):
Sample #    11:	ANG19       
Sample #    12:	ANG2        
Sample #    22:	ANG29       
Sample #    37:	DIST6       
Sample #    29:	ANG8        

Group F (8):
Sample #     6:	ANG14       
Sample #    25:	ANG4        
Sample #    13:	ANG20       
Sample #     8:	ANG16       
Sample #    17:	ANG24       
Sample #    19:	ANG26       
Sample #    26:	ANG5        
Sample #    24:	ANG30       

Group G (3):
Sample #    18:	ANG25       
Sample #    23:	ANG3        
Sample #    30:	ANG9        

Group H (4):
Sample #    31:	DIST1       
Sample #    38:	DIST7       
Sample #    33:	DIST2       
Sample #    39:	DIST8       

Group I (1):
Sample #    34:	DIST3       

Group J (1):
Sample #    35:	DIST4       


