Acta Crystallographica Section B

Structural Science

Volume 63, Part 6 (December 2007)


research papers



Acta Cryst. (2007). B63, 933-940    [ doi:10.1107/S0108768107051336 ]

Monitoring structural transformations in crystals. 11. Yang photocyclizations - one type of reaction, but diversity of structural changes

I. Turowska-Tyrk, J. Bakowicz and J. R. Scheffer

Abstract: Structural changes proceeding in a crystal during the Yang photocyclization of the salt 6,6-diethyl-5-oxo-5,6,7,8-tetrahydronaphthalene-2-carboxylate with (1S)-1-(4-methylphenyl)ethylamine were monitored by means of X-ray structure analysis. The course of the photoreaction was evaluated on the basis of the geometrical parameters for the pure reactant crystal. Variations in the cell constants, the product content, the geometry of the reaction centre, the orientation of molecular fragments and the geometry of hydrogen bonds were described and analyzed. It was found that the cell volume increased until 56% product content and decreased thereafter. The distance between the directly reacting C atoms was constant, ~ 3.0 Å, until ~ 75% reaction progress. Analysis of the distance between atoms that would participate in the formation of the second (unobserved) enantiomorph excluded the formation of such an isomer. Molecular fragments varied their orientation during the photoreaction, and the largest change was observed for the carboxylate group despite its participation in strong hydrogen bonds. The geometry of the hydrogen bonds changed during the photoreaction. The largest change was 0.17 Å for the D...A distance and 13° for the D-H...A angle. A comparison of the intra- and intermolecular parameters for the studied salt with data for other compounds undergoing the Yang photocyclization in crystals revealed a diversity of structural changes brought about by this type of photochemical reaction.

Keywords: photoreactions in crystals; Yang photocyclization; X-ray structure analysis; monitoring structural changes; hydrogen bonds.


hkldisplay filedownload file

Structure factor file (CIF format) (181.2 kbytes)
[ doi:10.1107/S0108768107051336/bk50650.0Psup3.hkl ]
Contains datablock 0P


hkldisplay filedownload file

Structure factor file (CIF format) (183.9 kbytes)
[ doi:10.1107/S0108768107051336/bk506528.6Psup4.hkl ]
Contains datablock 28.6P


hkldisplay filedownload file

Structure factor file (CIF format) (185.3 kbytes)
[ doi:10.1107/S0108768107051336/bk506556.5Psup5.hkl ]
Contains datablock 56.5P


hkldisplay filedownload file

Structure factor file (CIF format) (184.4 kbytes)
[ doi:10.1107/S0108768107051336/bk506572.6Psup6.hkl ]
Contains datablock 72.6P


hkldisplay filedownload file

Structure factor file (CIF format) (183.4 kbytes)
[ doi:10.1107/S0108768107051336/bk5065100Psup7.hkl ]
Contains datablock 100P


hkldisplay filedownload file

Structure factor file (CIF format) (70.3 kbytes)
[ doi:10.1107/S0108768107051336/bk5065sup2.pdf ]
Additional figure


Notes:

To open or display or play some files, you may need to set your browser up to use the appropriate software. See the full list of file types for an explanation of the different file types and their related mime types and, where available links to sites from where the appropriate software may be obtained.

The download button will force most browsers to prompt for a file name to store the data on your hard disk.

Where possible, images are represented by thumbnails.

 bibliographic record in  format

  Find reference:   Volume   Page   
  Search:     From   to      Advanced search

Copyright © International Union of Crystallography
IUCr Webmaster