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Volume 65 
Part 1 
Pages o8-o10  
January 2009  

Received 11 November 2008
Accepted 1 December 2008
Online 6 December 2008

Open access

The zwitterion of 4-nitro-2-{(E)-[2-(piperidin-1-yl)ethyl]iminomethyl}phenol

aFacultad de Ciencias Químicas, Universidad de Colima, Carretera Coquimatlán-Colima, Coquimatlán Colima, 28400, Mexico, and bUnidad Profesional Interdisciplinaria de Biotecnología, Instituto Politécnico Nacional, Avenida Acueducto s/n, Barrio La Laguna Ticomán, México DF 07340, Mexico
Correspondence e-mail: fjmartin@ucol.mx

The title Schiff base compound, 4-nitro-1-oxo-2-{(E)-[2-(piperidin-1-yl)ethyl]iminiomethyl}cyclohexadienide, C14H19N3O3, exists as a zwitterion, with the H atom of the phenol group being transferred to the imine N atom. The C=O, CAr-CAr and C-N bond lengths are in agreement with the oxocyclohexadienide-iminium zwitterionic form. The iminium H atom is engaged in a strong intramolecular hydrogen bond with the O atom of the keto group (N+-H...O) to form an S(6) motif. Soft C-H...O interactions in the ac plane lead to the development of hydrogen-bonded tapes, which are [pi]-stacked through the oxocyclohexadienide ring and iminium group. The significance of this study is in providing crystallographic evidence, supported by NMR and IR data, of the predominance of the oxocyclohexadienide-iminium zwitterion form over the noncharged canonical form in the title Schiff base.

Comment

Aromatic imines and their derivatives are an important group of molecules in organic chemistry, in particular those that have aryl groups bound to N or C atoms. They have been used successfully to study resonance-assisted hydrogen bonds (RAHBs; Krygowski & Stepien, 2005[Krygowski, T. M. & Stepien, B. T. (2005). Chem. Rev. 105, 3482-3512.]; Sobczyk et al., 2005[Sobczyk, L., Grabowski, S. J. & Krygowski, T. M. (2005). Chem. Rev. 105, 3513-3560.]). Imines substituted in the aromatic ring have offered the opportunity to study the substituent effects in RAHBs. In this context, the molecular structure of the title compound, (I)[link] (Fig. 1[link]), is reported here.

The single-crystal structure of the title Schiff base compound is built up by discrete molecules in the monoclinic space group P2/c, with one molecule in the asymmetric unit. A summary of bond lengths and angles is presented in Table 1[link]. The N8-C7 and O1-C1 bond lengths are in agreement with the double-bond character for the imine ([nu] at 1601 cm-1) and keto-carbonyl groups ([nu] at 1657 cm-1), respectively (Allen, 2002[Allen, F. H. (2002). Acta Cryst. B58, 380-388.]). Moreover, the bond lengths in the C1-C6 ring show

[Scheme 1]
clear alternation in the delocalized C2-C6 portion. The nitro group is tilted out of the mean plane of the adjacent ring by -11.1 (3)°, whereas the C4-N4 distance is in the characteristic range suggesting limited conjugation with the ring. Thus, the whole geometry is in agreement with the predominace of the oxocyclohexadienide-iminium zwitterion bonding scheme (see scheme[link]) (Krygowski & Stepien, 2005[Krygowski, T. M. & Stepien, B. T. (2005). Chem. Rev. 105, 3482-3512.]), in close agreement with the reported configurations of p-nitrophenolates of alkali metal cations (Butt et al., 1987[Butt, G. L., Mackay, M. F. & Topsom, R. D. (1987). Acta Cryst. C43, 1092-1094.]).

The iminium H atom (located in a difference map) is coplanar with the oxocyclohexadienide ring and on the same side of the molecule as the O atom of the keto group, allowing the formation of an intramolecular N-H...O hydrogen bond (Table 2[link]) in an S(6) motif (Bernstein et al., 1995[Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.]), with dimensions in agreement with the usual values (Krygowski et al., 1997[Krygowski, T. M., Wozniak, K., Anulewicz, R., Pawlak, D., Kolodziejski, W., Grech, E. & Szady, A. (1997). J. Phys. Chem. A, 101, 9399-9404.]; Steiner 1998[Steiner, T. (1998). J. Phys. Chem. A, 102, 7041-7052.], 2002[Steiner, T. (2002). Angew. Chem. Int. Ed. 41, 48-76.]). The N8...O1 distance has almost the same value as the RAHB of 2.607 (3) Å found in 3-{[(diphenoxythiophosphoryl)hydrazine]methylidene}-3,4-dihydro-2H-1-benzopyran-2,4-dione (Rybarczyk-Pirek et al., 2002[Rybarczyk-Pirek, A. J., Grabowski, S. J., Malecka, M. & Nawrot-Modranka, J. (2002). J. Phys. Chem. A, 106, 11956-11962.]). The iminium H atom is also engaged in N-H...O hydrogen bonding with the O atom from the keto group of a neighbouring molecule, forming dimers with an almost square R22(4) motif (Fig. 2[link]).

The first dimension of the extended structure is built up by soft C-H...O interactions with the participation of one of the O atoms from the nitro group, in a monocoordinative fashion (Allen et al., 1997[Allen, F. H., Baalham, C. A., Lommerse, J. P. M., Raithby, P. R. & Sparr, E. (1997). Acta Cryst. B53, 1017-1024.]), as the acceptor of two hydrogen bonds (Table 2[link]) to form an R21(6) motif. The whole hydrogen-bonding scheme, makes up tapes propagating along the direction of the c axis. All C-H...ON and C...ON distances are shorter than the mean values of 2.7 (2) and 3.5 (2) Å, respectively, found in a study of nitrobenzenes (André et al., 1997[André, I., Foces-Foces, C., Cano, F. H. & Martinez-Ripoll, M. (1997). Acta Cryst. B53, 996-1005.]), although the C-H...ON angles are within the accepted range [C-H...O = 133 (20)°]. Even when C-H...O interactions involving an NO2 group as acceptor are half as strong as C-H...O interactions (Allen et al., 1997[Allen, F. H., Baalham, C. A., Lommerse, J. P. M., Raithby, P. R. & Sparr, E. (1997). Acta Cryst. B53, 1017-1024.]) involving a CO group as the acceptor, they play a significant role in packing owing to their co-operative action.

The second dimension is ruled by the zwitterionic nature of (I)[link]. The anionic oxocyclohexadiene ring and the cationic iminium group from neighbouring tapes are overlapped. The iminium N and C atoms are 3.257 (3) and 3.462 (3) Å, respectively, from the centroid of the cyclohexadienide ring at (-x + 1, -y, -z). These short distances strongly suggest not only ion pairing but also a [pi]-stacking interaction between the iminium group, as acceptor, and the oxocyclohexadiene ring, as the donor of electron density (Fig. 3[link]). These [pi]-stacking interactions crosslink pairs of the hydrogen-bonded tapes described above to develop discrete centrosymmetric ribbons which propagate along the c axis.

[Figure 1]
Figure 1
The molecular structure of (I)[link], showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level and H atoms are shown as small spheres of arbitrary radii.
[Figure 2]
Figure 2
Hydrogen-bonded tapes formed by N-H...O and C-H...O interactions along the c axis. H atoms not involved in the motifs shown have been omitted for clarity. [Symmetry codes: (i) -x + 1, y, -z + [{3\over 2}]; (ii) -x + 1, y, -z + [{1\over 2}].]
[Figure 3]
Figure 3
The centrosymmetric oxocyclohexadienide-iminium [pi]-stacked pairs of compound (I)[link]. [Symmetry code: (iii) -x + 1, -y + 1, -z + 1.]

Experimental

Compound (I)[link] was synthesized by amidation of ethyl 6-nitro-2-oxo-2H-chromene-3-carboxylate (0.5 g, 1.9 mmol), prepared according to Santos-Contreras et al. (2007[Santos-Contreras, R. J., Martínez-Martínez, F. J., García-Báez, E. V., Padilla-Martínez, I. I., Peraza, A. L. & Höpfl, H. (2007). Acta Cryst. C63, o239-o242.]), with 1-(2-aminoethyl)piperidine (0.26 ml, 1.9 mmol) and two drops of piperidine as catalyst in refluxing ethanol (10 ml) for 24 h. The resulting orange solution was treated with activated charcoal and evaporated to give 0.3 g of an orange solid in 57% yield. Crystals suitable for X-ray analysis were obtained by slow evaporation from a saturated ethyl acetate solution (m.p. 413 K). IR (cm-1): [nu] (C=O) 1657, (C=N) 1601, (C-NO) 1535; 1H NMR (300 MHz, CDCl3): [delta] 6.90 (d, H6, 3J = 9.0 Hz), 8.16 (dd, H5, 3J = 9.0 and 4J = 3.0 Hz), 8.22 (d, H3, 3J = 9.0 Hz), 11.9 (b, NH), 8.31 (s, H7), 3.74 (t, 2H, 3J = 6.2 Hz, -+NHCH2-), 2.64 (t, 2H, 3J = 6.2 Hz, -CH2N), 2.46 [m, 4H, N-(CH2)2], 1.56 (m, 4H, -CH2-), 1.46 (m, 2H, -CH2-); 13C NMR: [delta] 173.1 (C1), 115.6 (C2), 129.7 (C3), 137.5 (C4), 129.0 (C5), 120.9 (C6), 165.3 (C7), 58.4 (C9), 53.2 (C10), 54.8 (C12), 26.2 (C13), 24.3 (C14).

Crystal data
  • C14H19N3O3

  • Mr = 277.17

  • Monoclinic, P 2/c

  • a = 10.5688 (17) Å

  • b = 12.1887 (19) Å

  • c = 12.6816 (15) Å

  • [beta] = 114.696 (10)°

  • V = 1484.2 (4) Å3

  • Z = 4

  • Mo K[alpha] radiation

  • [mu] = 0.09 mm-1

  • T = 293 (2) K

  • 0.20 × 0.17 × 0.12 mm

Data collection
  • Bruker APEXII area-detector diffractometer

  • 13954 measured reflections

  • 2617 independent reflections

  • 2217 reflections with I > 2[sigma](I)

  • Rint = 0.039

Refinement
  • R[F2 > 2[sigma](F2)] = 0.066

  • wR(F2) = 0.151

  • S = 1.20

  • 2617 reflections

  • 185 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • [Delta][rho]max = 0.21 e Å-3

  • [Delta][rho]min = -0.20 e Å-3

Table 1
Selected geometric parameters (Å, °)

O1-C1 1.257 (3)
O4A-N4 1.227 (3)
O4B-N4 1.230 (3)
N4-C4 1.442 (3)
N8-C7 1.285 (3)
N8-C9 1.454 (3)
N11-C10 1.449 (3)
N11-C12 1.451 (3)
N11-C16 1.455 (3)
C1-C2 1.447 (3)
C1-C6 1.435 (3)
C2-C3 1.395 (3)
C3-C4 1.372 (3)
C4-C5 1.406 (3)
C5-C6 1.357 (3)
C9-C10 1.514 (3)
O4A-N4-O4B 122.9 (2)
O4A-N4-C4 118.4 (2)
O4B-N4-C4 118.7 (2)
C7-N8-C9 123.6 (2)
C10-N11-C12 111.9 (2)
C10-N11-C16 112.7 (2)
C12-N11-C16 109.9 (2)
O1-C1-C6 122.3 (2)
O1-C1-C2 122.0 (2)
N4-C4-C5 119.6 (2)
N4-C4-C3 120.0 (2)
N8-C7-C2 125.0 (2)
N8-C9-C10 111.0 (2)
N11-C10-C9 112.2 (2)
N11-C12-C13 111.1 (3)
N11-C16-C15 110.9 (3)

Table 2
Hydrogen-bond geometry (Å, °)

D-H...A D-H H...A D...A D-H...A
N8-H8...O1 0.90 (2) 2.02 (3) 2.674 (3) 129 (3)
N8-H8...O1i 0.90 (2) 2.13 (3) 2.857 (3) 137 (3)
C3-H3...O4Bii 0.93 2.57 3.400 (3) 149
C7-H7...O4Bii 0.93 2.44 3.302 (3) 155
Symmetry codes: (i) [-x+1, y, -z+{\script{3\over 2}}]; (ii) [-x+1, y, -z+{\script{1\over 2}}].

The amino H atom was located in a difference Fourier map and refined with an N-H distance of 0.90 (2) Å. All other H atoms were positioned geometrically and refined using a riding model [C-H = 0.93 and 0.97 Å for aromatic and CH2 H atoms, respectively, and Uiso(H) = 1.2Ueq(C)].

Data collection: APEX2 (Bruker, 2004[Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2004[Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]) and Mercury (Macrae et al., 2006[Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453-457.]); software used to prepare material for publication: SHELXL97 and WinGX2003 (Farrugia, 1999[Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837-838.]).


Supplementary data for this paper are available from the IUCr electronic archives (Reference: GD3261 ). Services for accessing these data are described at the back of the journal.


Acknowledgements

This work was supported by CGIC-UC (Coordinación General de Investigación Científica de la Universidad de Colima) and SIP-IPN (Secretaria de Investigación y Postgrado del Instituto Politécnico Nacional).

References

Allen, F. H. (2002). Acta Cryst. B58, 380-388.  [CrossRef] [details]
Allen, F. H., Baalham, C. A., Lommerse, J. P. M., Raithby, P. R. & Sparr, E. (1997). Acta Cryst. B53, 1017-1024.  [CrossRef] [details]
André, I., Foces-Foces, C., Cano, F. H. & Martinez-Ripoll, M. (1997). Acta Cryst. B53, 996-1005.  [CrossRef] [details]
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.  [CrossRef] [ChemPort] [ISI]
Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
Butt, G. L., Mackay, M. F. & Topsom, R. D. (1987). Acta Cryst. C43, 1092-1094.  [CrossRef] [details]
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837-838.  [CrossRef] [ChemPort] [details]
Krygowski, T. M. & Stepien, B. T. (2005). Chem. Rev. 105, 3482-3512.  [ISI] [CrossRef] [PubMed] [ChemPort]
Krygowski, T. M., Wozniak, K., Anulewicz, R., Pawlak, D., Kolodziejski, W., Grech, E. & Szady, A. (1997). J. Phys. Chem. A, 101, 9399-9404.  [CrossRef] [ChemPort] [ISI]
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453-457.  [ISI] [CrossRef] [ChemPort] [details]
Rybarczyk-Pirek, A. J., Grabowski, S. J., Malecka, M. & Nawrot-Modranka, J. (2002). J. Phys. Chem. A, 106, 11956-11962.  [CrossRef] [ChemPort]
Santos-Contreras, R. J., Martínez-Martínez, F. J., García-Báez, E. V., Padilla-Martínez, I. I., Peraza, A. L. & Höpfl, H. (2007). Acta Cryst. C63, o239-o242.  [CSD] [CrossRef] [details]
Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.  [CrossRef] [details]
Sobczyk, L., Grabowski, S. J. & Krygowski, T. M. (2005). Chem. Rev. 105, 3513-3560.  [ISI] [CrossRef] [PubMed] [ChemPort]
Steiner, T. (1998). J. Phys. Chem. A, 102, 7041-7052.  [ISI] [CrossRef] [ChemPort]
Steiner, T. (2002). Angew. Chem. Int. Ed. 41, 48-76.  [ISI] [CrossRef] [ChemPort]


Acta Cryst (2009). C65, o8-o10   [ doi:10.1107/S0108270108040407 ]

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