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Volume 69 
Part 1 
Pages 5-7  
January 2013  

Received 20 September 2012
Accepted 23 November 2012
Online 13 December 2012

A novel LaIII-based metal-organic framework (MOF) with a new topology: poly[diaquabis([mu]5-2,5-dioxopiperazine-1,4-diacetato)([mu]2-oxalato)dilanthanum(III)]

aCollege of Chemical Engineering and Materials Science, Zhejiang University of Technology, Hangzhou 310014, Zhejiang, People's Republic of China
Correspondence e-mail: glzhuang@zjut.edu.cn

In the title metal-organic framework (MOF), [La(C8H8N2O6)(C2O4)0.5(H2O)]n, the LaIII cation is coordinated by eight O atoms in a square antiprismatic configuration. Each LaIII cation is connected to adjacent LaIII cations by bridging 2,5-dioxopiperazine-1,4-diacetate (PODC2-) and oxalate (lying about an inversion centre) ligands, generating two-dimensional grid layers. The layers are further linked via the carboxylate groups of the PODC2- ligands in syn-syn and syn-anti modes, resulting in a three-dimensional framework with a short Schläfli vertex notation of {47.63}{47.67.8}.

Comment

The design and synthesis of metal-organic frameworks (MOFs) have received much attention in recent years because of their aesthetically interesting structures and potential applications in adsorption, separation, catalysis, luminescence, magnetism and nonlinear optics (Ma & Zhou, 2006[Ma, S.-Q. & Zhou, H.-C. (2006). J. Am. Chem. Soc. 128, 11734-11735.]; Lin et al., 2010[Lin, J.-B., Zhang, J.-P. & Chen, X.-M. (2010). J. Am. Chem. Soc. 132, 6654-6656.]; Chen et al., 2010[Chen, B.-L., Xiang, S.-C. & Qian, G.-D. (2010). Acc. Chem. Res. 43, 1115-1124.]; Kurmoo, 2009[Kurmoo, M. (2009). Chem. Soc. Rev. 38, 1353-1379.]). Although a great

[Scheme 1]
variety of MOFs with diverse topologies have been obtained, reports on those based on lanthanide ions are still relatively rare. This lack of examples may be attributable to the high coordination-number requirement of these 4f metal ions, as well as to their flexible coordination geometry (Zhao et al., 2008[Zhao, J., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2008). Dalton Trans. pp. 4714-4716.]). Therefore, the effective construction of lanthanide-based MOFs (LMOFs) is still a challenge. According to the philosophy of the hard-soft acid-base theory, the ligands used by LMOFs usually involve multicarboxylates and N/O mixed ligands, such as terephthalic acid and pyridine-2,6-dicarboxylic acid (Reineke et al., 1999[Reineke, T. M., Eddaoudi, M., O'Keeffe, M. & Yaghi, O. M. (1999). Angew. Chem. Int. Ed. 41, 2590-2594.]; Ghosh & Bharadwaj, 2003[Ghosh, S. K. & Bharadwaj, P. K. (2003). Inorg. Chem. 42, 8250-8254.]). Nonetheless, to the best of our knowledge, LMOFs based on cyclopeptide ligands are very rare (Kong et al., 2009[Kong, X.-J., Zhuang, G.-L., Ren, Y.-P., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2009). Dalton Trans. pp. 1707-1709.]; Zhuang et al., 2010[Zhuang, G.-L., Kong, X.-J., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2010). CrystEngComm, 12, 2691-2694.]).

Utilizing 2,5-dioxopiperazine-1,4-diacetic acid (H2PODC) as a ligand, we previously reported the synthesis and structure of a series of LMOFs (Zhuang et al., 2010[Zhuang, G.-L., Kong, X.-J., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2010). CrystEngComm, 12, 2691-2694.]). As an expansion of our studies, we herein report a new LMOF, the title compound, (I)[link], employing mixed ligands [H2PODC and oxalic acid (H2ox)], and focus on its synthesis and structure.

Complex (I)[link] crystallizes in the monoclinic space group P2/n. The asymmetric unit contains one LaIII cation, one PODC2- ligand, half an ox2- ligand (lying about an inversion centre) and one aqua ligand. As shown in Fig. 1[link], the coordination environment of the LaIII cation can be viewed as a square antiprism, featuring contributions by four carboxylate O atoms from four different PODC2- ligands, two carboxylate O atoms from an ox2- ligand, one carbonyl O atom of a fifth PODC2- ligand and one O atom from an aqua ligand. The LaIII-O bond lengths [2.4374 (17)-2.5752 (18) Å] are in agreement with those of pure H2PODC-based compounds, for example, [La(PODC)1.5(H2O)]·2H2O, (II) (Zhuang et al., 2010[Zhuang, G.-L., Kong, X.-J., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2010). CrystEngComm, 12, 2691-2694.]). As shown in Fig. 1[link], the two carboxylate groups of the PODC2- ligand feature syn-syn and syn-anti coordination modes and one carbonyl group takes part in coordination. This was also found in (II). However, in a similar compound obtained previously, [Dy2(PODC)(ox)2(H2O)2] (Kong et al., 2009[Kong, X.-J., Zhuang, G.-L., Ren, Y.-P., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2009). Dalton Trans. pp. 1707-1709.]), the PODC2- ligand exhibits a different coordination mode from that of (I)[link], owing to the different lanthanide cation. Furthermore, the number of PODC2- ligands around the LaIII cation in (I)[link] is five, which is less than that of pure H2PODC-based LaIII MOFs, e.g. (II). In addition, two hydrogen bonds (see Table 1[link]) are found in the three-dimensional network; according to the classification of Steiner (2002[Steiner, T. (2002). Angew. Chem. Int. Ed. 41, 48-76.]), they are moderate hydrogen bonds.

Inspection of the three-dimensional structure of (I)[link] shows that each LaIII cation is connected to adjacent LaIII cations by bridging PODC2- and ox2- ligands, generating two-dimensional grid layers (see Fig. 2[link]a). These layers are further linked via the carboxylate groups of the PODC2- ligands in syn-syn (O6-C8-O5) and syn-anti (O1-C1-O2) modes (see Fig. 2[link]b), resulting in a three-dimensional framework, as shown in Fig. 3[link]. The PODC2- ligand serves as a five-connecting node, while the LaIII cation is a six-connecting node. Generally, the short Schläfli vertex notation of the net can be represented as {47.63}{47.67.8}, as indicated by the software TOPOS (Blatov, 2006[Blatov, V. A. (2006). IUCr Comput. Comm. Newsl. 7, 4-38.]).

In conclusion, to the best of our knowledge (I)[link] features a new topology and exhibits a different structure to that obtained previously (Kong et al., 2009[Kong, X.-J., Zhuang, G.-L., Ren, Y.-P., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2009). Dalton Trans. pp. 1707-1709.]). The difference can be ascribed to two aspects: (i) the ratio of PODC2- and ox2- ligands in the two compounds; and (ii) the lanthanide cation, i.e. a light rare-earth element (La) for (I)[link], but heavy rare-earth elements (Dy, Ho and Yb) for the compounds reported by Kong et al. (2009[Kong, X.-J., Zhuang, G.-L., Ren, Y.-P., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2009). Dalton Trans. pp. 1707-1709.]).

[Figure 1]
Figure 1
The coordination environment of the LaIII cation in (I)[link], showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. [Symmetry codes: (i) -x, -y + 1, -z + 1; (ii) -x + [{1\over 2}], y, -z + [{1\over 2}]; (iii) x + [{1\over 2}], -y, x + [{1\over 2}]; (iv) x + [{1\over 2}], -y + 1, z + [{1\over 2}]; (v) x, y - 1, z.]
[Figure 2]
Figure 2
(a) A view of the structure of (I)[link], showing the two-dimensional network viewed along the b axis. (b) A view showing how the two-dimensional network is linked by carboxylate groups in the b direction, with only the carboxylate groups shown for simplicity. [Symmetry codes: (iv) x + [{1\over 2}], -y + 1, z + [{1\over 2}]; (v) x, y - 1, z; (vi) x, y + 1, z.]
[Figure 3]
Figure 3
A schematic representation of the topological motif of (I)[link].

Experimental

2,5-Dioxopiperazine-1,4-diacetic acid (H2PODC) was prepared according to our previously reported method (Kong et al., 2009[Kong, X.-J., Zhuang, G.-L., Ren, Y.-P., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2009). Dalton Trans. pp. 1707-1709.]). Oxalic acid dihydrate (0.032 g, 0.25 mmol) and H2PODC (0.12 g, 0.50 mmol) were dissolved in water (10 ml) and subjected to ultrasonic treatment for 10 min. La(NO3)3·6H2O (0.22 g, 0.50 mmol) was added to the mixture. The pH was adjusted slowly to about 4-5 with 1.0 mol l-1 sodium hydroxide solution. The solution was then sealed in a 25 ml Teflon-lined Parr bomb was heated at 423 K for 3 d and cooled to room temperature at a rate of 5 K h-1. Colourless crystals of (I)[link] were obtained in 42% yield (based on H2PODC). Analysis calculated (found) for C9H10LaN2O9 (%): C 25.16 (25.45), N 6.52 (6.88), H 2.33 (2.07). IR spectrum for (I)[link] (KBr, [nu], cm-1): 493 (m), 703 (w), 796 (m), 960 (m), 1187 (w), 1267 (w), 1286 (w), 1313 (m), 1387 (w), 1426 (w), 1485 (w), 1639 (s), 2937 (w).

Crystal data
  • [La(C8H8N2O6)(C2O4)0.5(H2O)]

  • Mr = 429.10

  • Monoclinic, P 2/n

  • a = 13.022 (3) Å

  • b = 4.9269 (10) Å

  • c = 19.420 (4) Å

  • [beta] = 92.54 (3)°

  • V = 1244.7 (4) Å3

  • Z = 4

  • Mo K[alpha] radiation

  • [mu] = 3.48 mm-1

  • T = 173 K

  • 0.30 × 0.10 × 0.05 mm

Data collection
  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: analytical (Alcock, 1970[Alcock, N. W. (1970). Crystallographic Computing, edited by F. R. Ahmed, S. R. Hall & C. P. Huber, p. 271. Copenhagen: Munksgaard.]) Tmin = 0.421, Tmax = 0.845

  • 9542 measured reflections

  • 2305 independent reflections

  • 2228 reflections with I > 2[sigma](I)

  • Rint = 0.037

Refinement
  • R[F2 > 2[sigma](F2)] = 0.020

  • wR(F2) = 0.052

  • S = 1.07

  • 2305 reflections

  • 190 parameters

  • H-atom parameters constrained

  • [Delta][rho]max = 0.92 e Å-3

  • [Delta][rho]min = -1.27 e Å-3

Table 1
Hydrogen-bond geometry (Å, °)

D-H...A D-H H...A D...A D-H...A
O1W-H1WA...O7i 0.85 1.94 2.678 (2) 145
O1W-H1WB...O4ii 0.85 1.86 2.703 (3) 172
Symmetry codes: (i) x, y-1, z; (ii) -x, -y+1, -z+1.

All H atoms were generated geometrically and allowed to ride on their parent atoms in riding-model approximations, with C-H = 0.99 Å and Uiso(H) = 1.2Ueq(C) for methyl H atoms, and O-H = 0.85 Å and Uiso(H) = 1.5Ueq(O) for water H atoms.

Data collection: PROCESS-AUTO (Rigaku, 1998[Rigaku (1998). PROCESS-AUTO. Rigaku Corporation, Tokyo, Japan.]); cell refinement: PROCESS-AUTO; data reduction: CrystalClear (Rigaku, 1999[Rigaku (1999). CrystalClear. Rigaku Corporation, Tokyo, Japan.]); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: DIAMOND (Brandenburg, 2008[Brandenburg, K. (2008). DIAMOND. Crystal Impact GbR, Bonn, Germany.]); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).


Supplementary data for this paper are available from the IUCr electronic archives (Reference: FG3274 ). Services for accessing these data are described at the back of the journal.


Acknowledgements

This work was supported by the National Natural Science Foundation of China (grant No. 21101137), Zhejiang Provincial Natural Science Foundation of China (grant No. LQ12B01004) and the Start-up Fund of Zhejiang University of Technology (grant No. 101009729).

References

Alcock, N. W. (1970). Crystallographic Computing, edited by F. R. Ahmed, S. R. Hall & C. P. Huber, p. 271. Copenhagen: Munksgaard.
Blatov, V. A. (2006). IUCr Comput. Comm. Newsl. 7, 4-38.
Brandenburg, K. (2008). DIAMOND. Crystal Impact GbR, Bonn, Germany.
Chen, B.-L., Xiang, S.-C. & Qian, G.-D. (2010). Acc. Chem. Res. 43, 1115-1124.  [ISI] [CrossRef] [ChemPort] [PubMed]
Ghosh, S. K. & Bharadwaj, P. K. (2003). Inorg. Chem. 42, 8250-8254.  [ISI] [CSD] [CrossRef] [PubMed] [ChemPort]
Kong, X.-J., Zhuang, G.-L., Ren, Y.-P., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2009). Dalton Trans. pp. 1707-1709.  [CSD] [CrossRef]
Kurmoo, M. (2009). Chem. Soc. Rev. 38, 1353-1379.  [ISI] [CrossRef] [PubMed] [ChemPort]
Lin, J.-B., Zhang, J.-P. & Chen, X.-M. (2010). J. Am. Chem. Soc. 132, 6654-6656.  [ISI] [CSD] [CrossRef] [ChemPort] [PubMed]
Ma, S.-Q. & Zhou, H.-C. (2006). J. Am. Chem. Soc. 128, 11734-11735.  [ISI] [CSD] [CrossRef] [PubMed] [ChemPort]
Reineke, T. M., Eddaoudi, M., O'Keeffe, M. & Yaghi, O. M. (1999). Angew. Chem. Int. Ed. 41, 2590-2594.  [ISI] [CrossRef]
Rigaku (1998). PROCESS-AUTO. Rigaku Corporation, Tokyo, Japan.
Rigaku (1999). CrystalClear. Rigaku Corporation, Tokyo, Japan.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.  [CrossRef] [details]
Steiner, T. (2002). Angew. Chem. Int. Ed. 41, 48-76.  [ISI] [CrossRef] [ChemPort]
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.  [ISI] [CrossRef] [ChemPort] [details]
Zhao, J., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2008). Dalton Trans. pp. 4714-4716.  [CSD] [CrossRef]
Zhuang, G.-L., Kong, X.-J., Long, L.-S., Huang, R.-B. & Zheng, L.-S. (2010). CrystEngComm, 12, 2691-2694.  [ISI] [CSD] [CrossRef] [ChemPort]


Acta Cryst (2013). C69, 5-7   [ doi:10.1107/S0108270112048184 ]