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Volume 69 
Part 1 
Pages 70-73  
January 2013  

Received 10 September 2012
Accepted 16 November 2012
Online 13 December 2012

Hydrogen bonding due to regioisomerism and its effect on the supramolecular architecture of diethyl 2-[(2/4-hydroxyanilino)methylidene]malonates

aSchool of Chemistry, Bharathidasan University, Tiruchirappalli 620 024, Tamilnadu, India
Correspondence e-mail: ilangovanbdu@yahoo.com

Diethyl 2-[(2-hydroxyanilino)methylidene]malonate, (I), and diethyl 2-[(4-hydroxyanilino)methylidene]malonate, (II), both C14H17NO5, crystallize in centrosymmetric orthorhombic and monoclinic crystal systems, respectively. Compound (I) resides on a crystallographic mirror plane and displays bifurcated intramolecular hydrogen bonding, as well as intermolecular hydrogen bonding due to the position of the hydroxy group. Compound (II)[link] has a single intramolecular N-H...O hydrogen bond. Infinite one-dimensional head-to-tail chains formed by O-H...O hydrogen bonding are present in both structures. The molecular packing is mainly influenced by the intermolecular O-H...O interactions. Additionally, C-H...O interactions crosslinking the chains are found in (II)[link].

Comment

Hydrogen bonding is an important force central to the functioning of several complex and large biomolecules such as enzymes, DNA and RNA. It plays a major role in the design of novel supramolecular architectures and allows recognition among many organic molecules. Crystal engineering pertains to the directionality of hydrogen bonds and the ways in which hydrogen bonding influences crystal geometries depending on their strengths (Desiraju, 2011[Desiraju, G. R. (2011). Cryst. Growth Des. 11, 896-898.]; Adam et al., 2010[Adam, D. M., Karel, J. H., Alexandre, N. S. & Colin, L. R. (2010). Cryst. Growth Des. 10, 5302-5306.]). Phenol compounds can exhibit inter- and intramolecular hydrogen bonding depending on the nature and position of additional functional groups. The electronic nature and the ortho, para or meta position of the substituent strongly influences the acidity of the phenolic H atom and hence the strength of the hydrogen bond.

2,2-Bis(ethoxycarbonyl)vinyl (BECV) derivatives are important intermediates useful in the synthesis of various nitrogen- and oxygen-containing heterocycles, as ligands in inorganic metal complexes and in the detection of amino acids. BECV-amine derivatives are mainly used as building blocks for the synthesis of a variety of bioactive nitrogen-containing

[Scheme 1]
heterocycles such as pyrazoles, 4-oxoquinoline-3-carboxylic acid esters, pyrimidines, pyrimido[1,2-a]pyrimidines, 3H,5H-pyrrolo[3,2-d]pyrimidines and pyrido[2,3-d]pyrimidines (Johnson & Ambler, 1911[Johnson, T. B. & Ambler, J. A. (1911). J. Am. Chem. Soc. 33, 978-985.]; Fustero et al., 2011[Fustero, S., Rosello, M. S., Barrio, P. & Fuentes, A. S. (2011). Chem. Rev. 111, 6984-7034.]; Niedermeier et al., 2009[Niedermeier, S., Singethan, K., Rohrer, S. G., Matz, M., Kossner, M., Diederich, S., Maisner, A., Schmitz, J., Hiltensperger, G., Baumann, K., Holzgrabe, U. & Schaulies, J. S. (2009). J. Med. Chem. 52, 4257-4265.]; Yang et al., 2009[Yang, W., Ruan, Z., Wang, Y., Kirk, K. V., Ma, Z., Arey, B. J., Cooper, C. B., Seethala, R., Feyen, J. H. M. & Dickson, J. K. Jr (2009). J. Med. Chem. 52, 1204-1208.]; Candeias et al., 2009[Candeias, N. R., Branco, L. C., Gois, P. M. P., Afonso, C. A. M. & Trindade, A. F. (2009). Chem. Rev. 109, 2703-2802.]; Petric et al., 1983[Petric, A., Stanovnik, B. & Tyler, M. (1983). J. Org. Chem. 48, 4132-4135.]; Furneaux & Tyler, 1999[Furneaux, R. H. & Tyler, P. C. (1999). J. Org. Chem. 64, 8411-8412.]).

Simple diethyl 2-[(alkyl/aryl)aminomethylidene]malonate (N-BECV) derivatives are biologically active compounds. Steck (1962[Steck, E. A. (1962). J. Org. Chem. 27, 306-308.]) observed that N-BECV derivatives of diisopropylamine, piperidine {diethyl 2-[(piperidin-1-yl)methylidene]malonate, see (1) in Scheme 2}, pyrrolidine and morpholine

[Scheme 2]
are central nervous system stimulants. Similarly, Santilli et al. (1964[Santilli, A. A., Bruce, W. F. & Osdene, T. S. (1964). J. Med. Chem. 7, 68-72.]) prepared a number of enamine derivatives containing the N-BECV unit, such as a 4-(aminomethyl)benzoic acid derivative, diethyl 2-({[3-(dimethylamino)propyl]amino}methylidene)malonate [see (2) in Scheme 2] and diethyl 2-{[(diphenylmethoxy)amino]methylidene}malonate [see (3) in Scheme 2], and established their muscle relaxation and sedative properties. In addition, N-BECV derivatives show a very low cytotoxicity to normal cells.

Recently, we have demonstrated that N-BECV can be used as a chemo-selective amine-protecting group useful for several sensitive organic functional group transformations (Ilangovan & Ganesh Kumar, 2010[Ilangovan, A. & Ganesh Kumar, R. (2010). Chem. Eur. J. 16, 2938-2943.]). In a continuation of this work, we studied the crystal structures of diethyl 2-[(2-hydroxyanilino)methylidene]malonate, (I)[link], and diethyl 2-[(4-hydroxyanilino)methylidene]malonate, (II)[link], and the effect of hydroxy-group substitution on their supramolecular architectures. To the best of our knowledge, single-crystal structures of BECV derivatives have not been reported previously.

Compounds (I)[link] and (II)[link] (Fig. 1[link]) are regioisomers. Compound (I)[link] occupies a crystallographic mirror plane and is totally planar, with the exception of a disordered ethoxy group where atom C13 occupies alternate positions just off the mirror plane. The benzene ring in compound (II)[link] is not constrained to be planar by any crystallographic symmetry, but is essentially planar, with an r.m.s. deviation of the ring atoms from their mean plane of 0.016 Å. The angles between the plane of the aminophenol ring and the plane of the vinylic double bond are 0 and 33.59 (12)° in (I)[link] and (II)[link], respectively. In both compounds, the C1-N1 (Car-N) bonds (Table 1[link]) are shorter than a normal N-C bond (1.336 Å; Allen et al.. 1987[Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1-19.]) because of conjugation between [pi]-electrons in the vinylic double bond and the lone pair electrons of the N atom. The vinylic C7-C8 bond lengths are similarly longer than normal vinylic C-C bonds (1.316 Å; Allen et al.. 1987[Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1-19.]).

The presence of a phenolic -OH group at the ortho position to the amine group in compound (I)[link] favours strong bifurcated intramolecular hydrogen bonds between the amine group and the hydroxy O atom, O1, and one of the ester carbonyl O atoms, O4 (Table 2[link]). This gives rise to S(6) and S(5) ring motifs (Fig. 2[link]) (Bernstein et al., 1995[Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.]) and helps in achieving rigorous planarity. The molecules are linked into extended chains, which run parallel to the b axis, by an intermolecular hydrogen bond between the hydroxy group and the carbonyl O atom of the second ester group in an adjacent molecule. This interaction has a graph-set motif of C(9). No interactions are observed between the chains.

In the case of (II)[link], two hydrogen-bond interactions (N1-H1N...O4 and O1-H1O...O2i; symmetry code as in Table 3[link]) are observed, the former intramolecular interaction gives rise to an S(6) ring motif (Table 3[link]). The latter interaction gives rise to an extended chain which runs parallel to the a axis and has a graph-set motif of C(11) (Fig. 3[link]). In addition to head-to-tail hydrogen bonding, there is a macrocyclic R22(26) dimer motif formed by a C11-H11C...O1ii interaction (Table 3[link]) between two adjacent one-dimensional chains (Fig. 4[link]). This gives rise to a ladder-like structure (Figs. 4[link]b and 5[link]). Neither compound shows any significant centroid-centroid or C-H...[pi] interactions.

In conclusion, we have studied crystal structure properties such as motifs, chains, the nature of hydrogen bonding and other interactions of the title compounds (I)[link] and (II)[link]. Variations in the ortho and para substitution of hydroxy groups was analysed. The presence of an -OH group adjacent to an -NH group favours bifurcated hydrogen bonding and the formation of S(6) and S(5) ring motifs, and gives rise to strict planarity for compound (I)[link]. In a supramolecular framework it gives rise to a layer-like structure. In the case of compound (II)[link], a S(6) ring and a macrocyclic R22(26) ring motif were observed between chains. Both compounds form a head-to-tail one-dimensional hydrogen-bonded chain. We believe that this study will be helpful in understanding the ability of these molecules to interact with biological systems. The compounds may be useful synthons in the formation of metal complexes and different hereocyclic compounds.

[Figure 1]
Figure 1
Perspective views of (a) compound (I)[link] and (b) compound (II)[link], showing the atom-numbering schemes. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii.
[Figure 2]
Figure 2
The one-dimensional hydrogen-bonded chains extending along the b axis in compound (I)[link], viewed (a) down the c axis and (b) down the a axis. Dashed lines indicate the hydrogen-bonding interactions.
[Figure 3]
Figure 3
The one-dimensional hydrogen-bonded chain along the a axis in compound (II)[link], viewed approximately down the c axis. Dashed lines indicate the hydrogen-bonding interactions.
[Figure 4]
Figure 4
Different hydrogen-bonding interactions in compound (II)[link]. (a) The macrocyclic head-to-tail hydrogen-bonded dimer viewed along the b axis [symmetry code: (c) -x + 3, -y + 2, -z]. (b) The hydrogen-bonded ladder viewed down the b axis.
[Figure 5]
Figure 5
The packing of molecules of compound (II)[link] along (a) the c axis.

Experimental

Diethyl 2-(ethoxymethylidene)malonate (1 equivalent) was added to a solution of 2- or 4-aminophenol (1 equivalent) in ethanol (5 × w/v) and the resulting solution stirred for 15 min at room temperature (301 K) (Ilangovan & Ganesh Kumar, 2010[Ilangovan, A. & Ganesh Kumar, R. (2010). Chem. Eur. J. 16, 2938-2943.]). After completion of the reaction, the ethanol was evaporated under reduced pressure to give compound (I)[link] or (II)[link] as a white solid in quantitative yield [99% yields; m.p. 402 and 412 K for (I)[link] and (II)[link], respectively]. Good quality single crystals of (I)[link] and (II)[link] suitable for diffraction analysis were obtained from hexane and ethyl acetate mixtures (8:2 v/v).

Compound (I)[link]

Crystal data
  • C14H17NO5

  • Mr = 279.29

  • Orthorhombic, P b c m

  • a = 11.3011 (3) Å

  • b = 19.2760 (4) Å

  • c = 6.6725 (2) Å

  • V = 1453.54 (7) Å3

  • Z = 4

  • Mo K[alpha] radiation

  • [mu] = 0.10 mm-1

  • T = 296 K

  • 0.22 × 0.22 × 0.20 mm

Data collection
  • Bruker SMART CCD area-detector diffractometer

  • 7641 measured reflections

  • 1690 independent reflections

  • 1165 reflections with I > 2[sigma](I)

  • Rint = 0.027

Refinement
  • R[F2 > 2[sigma](F2)] = 0.049

  • wR(F2) = 0.154

  • S = 1.05

  • 1690 reflections

  • 132 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • [Delta][rho]max = 0.23 e Å-3

  • [Delta][rho]min = -0.20 e Å-3

Table 1
Comparison of selected bond lengths (Å) in (I)[link] and (II)[link]

  (I) (II)
N1-C1 1.404 (3) 1.4259 (13)
N1-C7 1.330 (3) 1.3232 (15)
C7-C8 1.364 (3) 1.3844 (14)

Table 2
Hydrogen-bond geometry (Å, °) for (I)[link]

D-H...A D-H H...A D...A D-H...A
N1-H1N...O1 0.84 (3) 2.28 (3) 2.606 (2) 103 (2)
N1-H1N...O4 0.84 (3) 1.95 (3) 2.640 (3) 139 (2)
O1-H1O...O2i 0.86 (4) 1.81 (4) 2.661 (2) 178 (3)
Symmetry code: (i) [-x+2, y+{\script{1\over 2}}, z].

Compound (II)[link]

Crystal data
  • C14H17NO5

  • Mr = 279.29

  • Monoclinic, P 21 /n

  • a = 10.9970 (11) Å

  • b = 10.8919 (11) Å

  • c = 12.3244 (12) Å

  • [beta] = 105.206 (1)°

  • V = 1424.5 (2) Å3

  • Z = 4

  • Mo K[alpha] radiation

  • [mu] = 0.10 mm-1

  • T = 296 K

  • 0.25 × 0.25 × 0.20 mm

Data collection
  • Bruker SMART CCD area-detector diffractometer

  • 12064 measured reflections

  • 3297 independent reflections

  • 2826 reflections with I > 2[sigma](I)

  • Rint = 0.027

Refinement
  • R[F2 > 2[sigma](F2)] = 0.038

  • wR(F2) = 0.117

  • S = 1.05

  • 3297 reflections

  • 182 parameters

  • H-atom parameters constrained

  • [Delta][rho]max = 0.25 e Å-3

  • [Delta][rho]min = -0.17 e Å-3

Table 3
Hydrogen-bond geometry (Å, °) for (II)[link]

D-H...A D-H H...A D...A D-H...A
N1-H1N...O4 0.86 2.06 2.6936 (13) 130
O1-H1O...O2i 0.82 1.91 2.7268 (13) 174
C11-H11C...O1ii 0.96 2.60 3.472 (2) 152
Symmetry code: (i) x+1, y, z; (ii) -x+3, -y+2, -z.

For compound (I), the amino and hydroxy H atoms were located in a difference map and refined isotropically. All other H atoms, were placed in their geometrically idealized positions and refined using a riding model, with C-H = 0.93 (aromatic and methyl) or 0.97 Å (methylene), O-H = 0.82 Å and N-H = 0.86 Å, and with Uiso(H) = 1.5Ueq(C,O) for the methyl groups and the hydroxy group in (II), and Uiso(H) = 1.2Ueq(C,N) otherwise.

For both compounds, data collection: SMART (Bruker, 2008[Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SMART; data reduction: SAINT (Bruker, 2008[Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.]); program(s) used to solve structure: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]); software used to prepare material for publication: PLATON.


Supplementary data for this paper are available from the IUCr electronic archives (Reference: FN3116 ). Services for accessing these data are described at the back of the journal.


Acknowledgements

The authors thank the DST-India (FIST programme) for use of the Bruker SMART APEXII diffractometer and the 400 MHz NMR facility at the School of Chemistry, Bharathidasan University.

References

Adam, D. M., Karel, J. H., Alexandre, N. S. & Colin, L. R. (2010). Cryst. Growth Des. 10, 5302-5306.
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1-19.
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573.  [CrossRef] [ChemPort] [ISI]
Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
Candeias, N. R., Branco, L. C., Gois, P. M. P., Afonso, C. A. M. & Trindade, A. F. (2009). Chem. Rev. 109, 2703-2802.  [ISI] [CrossRef] [PubMed] [ChemPort]
Desiraju, G. R. (2011). Cryst. Growth Des. 11, 896-898.  [CrossRef] [ChemPort]
Furneaux, R. H. & Tyler, P. C. (1999). J. Org. Chem. 64, 8411-8412.  [CrossRef] [PubMed] [ChemPort]
Fustero, S., Rosello, M. S., Barrio, P. & Fuentes, A. S. (2011). Chem. Rev. 111, 6984-7034.  [ISI] [CrossRef] [ChemPort] [PubMed]
Ilangovan, A. & Ganesh Kumar, R. (2010). Chem. Eur. J. 16, 2938-2943.  [CrossRef] [ChemPort] [PubMed]
Johnson, T. B. & Ambler, J. A. (1911). J. Am. Chem. Soc. 33, 978-985.  [CrossRef] [ChemPort]
Niedermeier, S., Singethan, K., Rohrer, S. G., Matz, M., Kossner, M., Diederich, S., Maisner, A., Schmitz, J., Hiltensperger, G., Baumann, K., Holzgrabe, U. & Schaulies, J. S. (2009). J. Med. Chem. 52, 4257-4265.  [ISI] [CrossRef] [PubMed] [ChemPort]
Petric, A., Stanovnik, B. & Tyler, M. (1983). J. Org. Chem. 48, 4132-4135.  [CrossRef] [ChemPort]
Santilli, A. A., Bruce, W. F. & Osdene, T. S. (1964). J. Med. Chem. 7, 68-72.  [CrossRef] [PubMed] [ChemPort] [ISI]
Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.  [CrossRef] [details]
Spek, A. L. (2009). Acta Cryst. D65, 148-155.  [ISI] [CrossRef] [details]
Steck, E. A. (1962). J. Org. Chem. 27, 306-308.  [CrossRef] [ChemPort]
Yang, W., Ruan, Z., Wang, Y., Kirk, K. V., Ma, Z., Arey, B. J., Cooper, C. B., Seethala, R., Feyen, J. H. M. & Dickson, J. K. Jr (2009). J. Med. Chem. 52, 1204-1208.  [ISI] [CrossRef] [PubMed] [ChemPort]


Acta Cryst (2013). C69, 70-73   [ doi:10.1107/S0108270112047257 ]