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Volume 69 
Part 1 
Pages 74-76  
January 2013  

Received 8 November 2012
Accepted 21 November 2012
Online 13 December 2012

(Z)-5-[4-(Dimethylamino)benzylidene]-2-(piperidin-1-yl)-1,3-thiazolidin-4(5H)-one

aDepartamento de Química, Universidad de Valle, AA 25360 Cali, Colombia,bDepartamento de Química Inorgánica y Orgánica, Universidad de Jaén, 23071 Jaén, Spain, and cSchool of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland
Correspondence e-mail: cg@st-andrews.ac.uk

The molecules of the title compound, C17H21N3OS, are characterized by a wide C-C-C angle at the methine C atom linking the aryl and thiazolidine rings, associated with a short repulsive intramolecular S...H contact between atoms in these two rings. A single piperidine-arene C-H...[pi] hydrogen bond links pairs of molecules into centrosymmetric dimers.

Comment

We report here the molecular structure and the supramolecular aggregation of (Z)-5-[4-(dimethylamino)benzylidene]-2-(piperidin-1-yl)-1,3-thiazolidin-4(5H)-one, (I)[link] (Fig. 1[link]), which we compare briefly with those of the analogues (II) (Low et al., 2007[Low, J. N., Cobo, J., Gutiérrez, A., Insuasty, B. & Glidewell, C. (2007). Acta Cryst. E63, o1123-o1125.]) and (III) (Insuasty et al., 2012[Insuasty, A., Insuasty, B., Jobo, J. & Glidewell, C. (2012). Private communication (deposition number 900693). CCDC, Cambridge, England.]) (see Scheme 1). Compound (I)[link] was prepared by reaction of piperidine with the intermediate (Z)-5-[4-(dimethylamino)benzylidene]-1,3-thiazolidin-4-one (A) (see Scheme 2), which was itself prepared using a base-catalysed condensation reaction between rhodanine (2-sulfanylidene-1,3-thiazolidin-4-one) and 4-(dimethylamino)benzaldehyde. The structures of a number of substituted (Z)-benzylidene-2-sulfanylidene-1,3-thiazolidin-4-ones have been reported recently (Delgado et al., 2005[Delgado, P., Quiroga, J., Cobo, J., Low, J. N. & Glidewell, C. (2005). Acta Cryst. C61, o477-o482.], 2006[Delgado, P., Quiroga, J., de la Torre, J. M., Cobo, J., Low, J. N. & Glidewell, C. (2006). Acta Cryst. C62, o382-o385.]); these compounds are of interest, both as potential intermediates for the synthesis of novel fused heterocyclic systems and as potential antifungal agents (Sortino et al., 2007[Sortino, M., Delgado, P., Juárez, S., Quiroa, J., Aboía, R., Insuasty, B., Nogueras, M., Rodero, L., Garibotto, F. M., Enrize, R. D. & Zacchino, S. A. (2007). Bioorg. Med. Chem. 15, 484-494.]).

As generally found for (Z)-5-benzylidene-1,3-thiazolidin-4-ones (Delgado et al., 2005[Delgado, P., Quiroga, J., Cobo, J., Low, J. N. & Glidewell, C. (2005). Acta Cryst. C61, o477-o482.], 2006[Delgado, P., Quiroga, J., de la Torre, J. M., Cobo, J., Low, J. N. & Glidewell, C. (2006). Acta Cryst. C62, o382-o385.]; Low et al., 2007[Low, J. N., Cobo, J., Gutiérrez, A., Insuasty, B. & Glidewell, C. (2007). Acta Cryst. E63, o1123-o1125.]), the aryl and thiazolidine rings in compound (I)[link] are only modestly displaced from coplanarity, as indicated by the relevant torsion angles (Table 1[link]). The dihedral angle between these two ring planes is only 28.1 (2)° and the piperidine substituent adopts an almost perfect chair conformation with the N21-C2 bond occupying an equatorial site.

Perhaps the most striking feature of the molecular structure of (I)[link] is the very wide C-C-C angle of 130.2 (2)° at the bridging C57 atom. Associated with this wide angle is a rather short intramolecular contact distance of 2.62 Å between atoms S1 and H56 (Fig. 1[link]); this distance is significantly shorter than

[Scheme 1]
the sum (2.89 Å) of the van der Waals radii for S and H (Bondi, 1964[Bondi, A. (1964). J. Phys. Chem. 68, 441-452.]; Rowland & Taylor, 1996[Rowland, R. S. & Taylor, R. (1996). J. Phys. Chem. 100, 7384-7391.]), and it may be compared with the corresponding value of 2.50 Å in compound (II) (Low et al., 2007[Low, J. N., Cobo, J., Gutiérrez, A., Insuasty, B. & Glidewell, C. (2007). Acta Cryst. E63, o1123-o1125.]) and 2.75 and 2.77 Å for the two independent molecules of compound (III) (Insuasty et al., 2012[Insuasty, A., Insuasty, B., Jobo, J. & Glidewell, C. (2012). Private communication (deposition number 900693). CCDC, Cambridge, England.]). In addition, the exocyclic angles S1-C5-C57 and C56-C51-C57 are both significantly larger than the corresponding angles C4-C5-C57 and C52-C51-C57, respectively (Table 1[link]). These observations, taken together, indicate that the nonbonded intramolecular contact S1...H56 is strongly repulsive. It appears that distortion of the bond angles at atoms C5, C51 and C57 is an energetically more favourable route for accommodating the repulsive S...H contact than that provided by a significant rotation of the aryl ring around the C51-C57 bond. On the other hand, although the aryl-ring C52-C53 and C55-C56 bond lengths of 1.379 (4) and 1.389 (3) Å, respectively, are slightly shorter than the remaining C-C distances in this ring [range 1.397 (3)-1.412 (3) Å; mean 1.405 Å], none of the other bond lengths in (I)[link] (Table 1[link]) provides any evidence for the development of a polarized (zwitterionic) electronic structure of type (Ia) which might lead to restricted rotation about the C51-C57 bond.
[Scheme 2]

The supramolecular aggregation in compound (I)[link] is very simple as the crystal structure contains neither conventional hydrogen bonds nor aromatic [pi]-[pi] stacking interactions. Instead the molecules are linked in pairs by a single C-H...[pi](arene) hydrogen bond (Table 2[link]) to form centrosymmetric dimers, with the reference dimer centred across ([1 \over 2], [1 \over 2], [1 \over 2]) (Fig. 2[link]). There are two such dimers per unit cell, but there are no direction-specific interactions between adjacent dimers. The only other potentially significant intermolecular contact is of the C-H...S type between the molecules at (x, y, z) and (-x + 1, -y, -z + 1) (Table 2[link]). However, not only is the H...S distance greater than the sum (2.89 Å) of the van der Waals radii for H and S (Bondi, 1964[Bondi, A. (1964). J. Phys. Chem. 68, 441-452.]; Rowland & Taylor, 1996[Rowland, R. S. & Taylor, R. (1996). J. Phys. Chem. 100, 7384-7391.]), but two-connected sulfur has been shown (Allen et al., 1997[Allen, F. H., Bird, C. M., Rowland, R. S. & Raithby, P. R. (1997). Acta Cryst. B53, 696-701.]) to be an extremely poor acceptor in hydrogen bonds, even from O-H and N-H as donors; accordingly, this contact cannot be regarded as structurally significant.

It is of interest to compare briefly the supramolecular aggregation reported here for compound (I)[link] with that in compounds (II) and (III). In compound (II) (Low et al., 2007[Low, J. N., Cobo, J., Gutiérrez, A., Insuasty, B. & Glidewell, C. (2007). Acta Cryst. E63, o1123-o1125.]), symmetry-related pairs of molecules are again linked into cyclic dimers, but here the component molecules are related by a twofold rotation axis, rather than by inversion as in compound (I)[link] and hydrogen bond concerned in (II) is of the C-H...O type rather than of the C-H...[pi](arene) type found in (I)[link], Compound (III) (Insuasty et al., 2012[Insuasty, A., Insuasty, B., Jobo, J. & Glidewell, C. (2012). Private communication (deposition number 900693). CCDC, Cambridge, England.]) crystallizes in the space group P[\overline{1}] with Z' = 2, and in one of the two independent molecules the chair-form morpholine ring is conformationally disordered over two sets of sites, with the two disorder forms exhibiting different orientations of the ring, while the other molecule is fully ordered. An extensive series of C-H...O hydrogen bonds link the molecules of (III) into a complex two-dimensional structure; it is notable that, despite the molecular constitution, intermolecular hydrogen bonds of the C-H...N type are absent from the structure of compound (III).

[Figure 1]
Figure 1
The molecular structure of compound (I)[link], showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level.
[Figure 2]
Figure 2
Part of the crystal structure of compound (I)[link], showing the formation of a hydrogen-bonded dimer centred at ([1 \over 2], [1 \over 2], [1 \over 2]). For the sake of clarity, H atoms not involved in the motif shown have been omitted. The atom marked with an asterisk (*) is at the symmetry position (-x + 1, -y + 1, -z + 1).

Experimental

To a mixture of 4-(dimethylamino)benzaldehyde (1.1 mmol) and rhodanine (1.0 mmol) in dry ethanol (10 ml) was added one drop of piperidine. This mixture was then heated under reflux for 6 h. After cooling the mixture to ambient temperature, the resulting solid precipitate was collected by filtration and washed with cold ethanol to provide intermediate (A). A mixture of (A) (1.0 mmol) and piperidine (2.0 mmol) in dry tetrahydrofuran (10 ml) was then heated under reflux for 20 h. After warming to ambient temperature, this mixture was poured onto an excess of crushed ice. The resulting solid product was collected by filtration and washed successively with water and hexane, and then crystallized from ethanol (yield 42%, m.p. 490-492 K). MS (EI, 70 eV) m/z (%): 315 (M+, 45), 179 (6), 178 (15), 177 (100), 176 (27), 162 (5), 161 (7).

Crystal data
  • C17H21N3OS

  • Mr = 315.44

  • Monoclinic, P 21 /n

  • a = 12.7125 (14) Å

  • b = 7.8246 (4) Å

  • c = 16.579 (2) Å

  • [beta] = 106.904 (9)°

  • V = 1577.9 (3) Å3

  • Z = 4

  • Mo K[alpha] radiation

  • [mu] = 0.21 mm-1

  • T = 120 K

  • 0.44 × 0.25 × 0.16 mm

Data collection
  • Bruker-Nonius KappaCCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2003[Sheldrick, G. M. (2003). SADABS. University of Göttingen, Germany.]) Tmin = 0.913, Tmax = 0.967

  • 27613 measured reflections

  • 3627 independent reflections

  • 2147 reflections with I > 2[sigma](I)

  • Rint = 0.098

Refinement
  • R[F2 > 2[sigma](F2)] = 0.054

  • wR(F2) = 0.140

  • S = 1.05

  • 3627 reflections

  • 201 parameters

  • H-atom parameters constrained

  • [Delta][rho]max = 0.34 e Å-3

  • [Delta][rho]min = -0.36 e Å-3

Table 1
Selected geometric parameters (Å, °)

S1-C2 1.775 (3)
C2-N3 1.316 (3)
N3-C4 1.379 (3)
C4-C5 1.500 (4)
C5-S1 1.748 (3)
C4-O4 1.230 (3)
C5-C57 1.345 (3)
C57-C51 1.454 (3)
C51-C52 1.402 (3)
C52-C53 1.379 (4)
C53-C54 1.409 (4)
C54-C55 1.412 (3)
C55-C56 1.389 (3)
C56-C51 1.397 (3)
C54-N54 1.372 (3)
C5-C57-C51 130.2 (2)
C4-C5-C57 122.6 (2)
S1-C5-C57 127.8 (2)
C52-C51-C57 118.7 (2)
C56-C51-C57 124.6 (2)
S1-C5-C57-C51 -2.1 (4)
C5-C57-C51-C52 157.9 (3)
C53-C54-N54-C58 -6.4 (4)
C53-C54-N54-C59 178.3 (2)

Table 2
Hydrogen-bond geometry (Å, °)

Cg represents the centroid of the C51-C56 ring.

D-H...A D-H H...A D...A D-H...A
C23-H23A...Cgi 0.99 2.71 3.680 (3) 168
C23-H23B...S1ii 0.99 2.94 3.902 (3) 165
Symmetry codes: (i) -x+1, -y+1, -z+1; (ii) -x+1, -y, -z+1.

All H atoms were located in difference maps and thereafter treated as riding atoms in geometrically idealized positions, with C-H = 0.95 (aromatic and methane), 0.98 (CH3) or 0.99 Å (CH2) and Uiso(H) = kUeq(C), where k = 1.5 for the methyl groups, which were permitted to rotate but not to tilt, and k = 1.2 for all other H atoms.

Data collection: COLLECT (Hooft, 1999[Hooft, R. W. W. (1999). COLLECT. Nonius BV, Delft, The Netherlands.]); cell refinement: DIRAX/LSQ (Duisenberg et al., 2000[Duisenberg, A. J. M., Hooft, R. W. W., Schreurs, A. M. M. & Kroon, J. (2000). J. Appl. Cryst. 33, 893-898.]); data reduction: EVALCCD (Duisenberg et al., 2003[Duisenberg, A. J. M., Kroon-Batenburg, L. M. J. & Schreurs, A. M. M. (2003). J. Appl. Cryst. 36, 220-229.]); program(s) used to solve structure: SIR2004 (Burla et al., 2005[Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst. 38, 381-388.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: PLATON (Spek, 2009[Spek, A. L. (2009). Acta Cryst. D65, 148-155.]); software used to prepare material for publication: SHELXL97 and PLATON.


Supplementary data for this paper are available from the IUCr electronic archives (Reference: YF3021 ). Services for accessing these data are described at the back of the journal.


Acknowledgements

The authors thank `Centro de Instrumentación Científico-Técnica of Universidad de Jaén' and the staff for data collection. AI and BI thank UNIVALLE and COLCIENCIAS for financial support. JC thanks the Consejería de Innovación, Ciencia y Empresa (Junta de Andalucía, Spain), the Universidad de Jaén and Ministerio de Ciencia e Innovación for financial support.

References

Allen, F. H., Bird, C. M., Rowland, R. S. & Raithby, P. R. (1997). Acta Cryst. B53, 696-701.  [CrossRef] [ISI] [details]
Bondi, A. (1964). J. Phys. Chem. 68, 441-452.  [ISI] [CrossRef] [ChemPort]
Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst. 38, 381-388.  [ISI] [CrossRef] [ChemPort] [details]
Delgado, P., Quiroga, J., Cobo, J., Low, J. N. & Glidewell, C. (2005). Acta Cryst. C61, o477-o482.  [CSD] [CrossRef] [details]
Delgado, P., Quiroga, J., de la Torre, J. M., Cobo, J., Low, J. N. & Glidewell, C. (2006). Acta Cryst. C62, o382-o385.  [CrossRef] [details]
Duisenberg, A. J. M., Hooft, R. W. W., Schreurs, A. M. M. & Kroon, J. (2000). J. Appl. Cryst. 33, 893-898.  [ISI] [CrossRef] [ChemPort] [details]
Duisenberg, A. J. M., Kroon-Batenburg, L. M. J. & Schreurs, A. M. M. (2003). J. Appl. Cryst. 36, 220-229.  [ISI] [CrossRef] [ChemPort] [details]
Hooft, R. W. W. (1999). COLLECT. Nonius BV, Delft, The Netherlands.
Insuasty, A., Insuasty, B., Jobo, J. & Glidewell, C. (2012). Private communication (deposition number 900693). CCDC, Cambridge, England.
Low, J. N., Cobo, J., Gutiérrez, A., Insuasty, B. & Glidewell, C. (2007). Acta Cryst. E63, o1123-o1125.  [CSD] [CrossRef] [details]
Rowland, R. S. & Taylor, R. (1996). J. Phys. Chem. 100, 7384-7391.  [CrossRef] [ChemPort] [ISI]
Sheldrick, G. M. (2003). SADABS. University of Göttingen, Germany.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.  [CrossRef] [details]
Sortino, M., Delgado, P., Juárez, S., Quiroa, J., Aboía, R., Insuasty, B., Nogueras, M., Rodero, L., Garibotto, F. M., Enrize, R. D. & Zacchino, S. A. (2007). Bioorg. Med. Chem. 15, 484-494.  [CrossRef] [PubMed] [ChemPort]
Spek, A. L. (2009). Acta Cryst. D65, 148-155.  [ISI] [CrossRef] [details]


Acta Cryst (2013). C69, 74-76   [ doi:10.1107/S0108270112047956 ]