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Cover illustration: Crystals from type II 3-dehydroquinate dehydratase (DHQase) from Actinobacillus pleuropneumoniae in a 0.7 mm capillary of the Granada Crystallization Box. The crystals were obtained in the International Space Station (ISS) during the Andromeda mission (p. 463). |
Acta Cryst. (2004). D60, 405-411 [ doi:10.1107/S0907444903026805 ]
N-terminal domainSynopsis: The interaction between platelet glycoprotein (GP) Ib
and von Willebrand factor is essential for thrombus formation, leading to the arrest of bleeding. The crystal structure of the N-terminal domain of GP Ib
has been solved at 1.7 Å resolution.
PDB reference: 1qyy
Online 25 February 2004
Acta Cryst. (2004). D60, 412-421 [ doi:10.1107/S0907444903027938 ]
Synopsis: Annealing experiments with flash-cooled protein crystals suggest that water is transported into or out of the crystal during the melting phase, depending on the ambient humidity. Measurements of the bulk density of cryosolvents suggest that during successful annealing the water transport modulates the thermal contraction of the cryosolvent in order to compensate for the thermal contraction of the protein crystal lattice.
Online 25 February 2004
Acta Cryst. (2004). D60, 422-431 [ doi:10.1107/S0907444903028415 ]
Synopsis: The DNA fragments d(GCGAAGC) form a new type of bulge-in duplex with the G·A×A·G crossing in the central part, to which an addition of an A residue induces exchange of the partners of G·A pairs to form a base-intercalated duplex.
Online 25 February 2004
Acta Cryst. (2004). D60, 432-438 [ doi:10.1107/S0907444903028956 ]
Synopsis: Likelihood-enhanced fast rotation functions have been developed and shown to be more sensitive to the correct orientation than the traditional fast rotation functions, especially when information from a partial solution can be exploited.
Online 25 February 2004
Acta Cryst. (2004). D60, 439-446 [ doi:10.1107/S090744490302938X ]
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Synopsis: The first two crystal structures of binary complexes of full-length glycogen synthase kinase 3
with the ATP analogues hydrolysate ADP and AMPPNP are described. Although several other crystal structures of the enzyme have already been reported, none of them contain ATP analogues. The structures of these binary complexes reveal detailed features of nucleotide recognition by GSK3
and may have useful implications in the design of drug candidates against Alzheimer's disease.
Online 25 February 2004
Acta Cryst. (2004). D60, 447-452 [ doi:10.1107/S0907444903029482 ]
Synopsis: The molecular replacement solution of a dimeric splicing endonuclease in pseudo-face-centered space group P21212 is reported.
PDB reference: 1r0v
Online 25 February 2004
Acta Cryst. (2004). D60, 453-462 [ doi:10.1107/S0907444903029718 ]
Synopsis: High-resolution structures of urate oxidase-inhibitor complexes lead to a reformulation of the active-site topology.
PDB references: 1r56, 1r51, 1r4s and 1r4u
Online 25 February 2004
Acta Cryst. (2004). D60, 463-471 [ doi:10.1107/S090744490302969X ]
Synopsis: The structure of the type II dehydroquinate dehydratase (DHQase) from A. pleuropneumoniae, the third enzyme of the shikimate pathway, has been determined.
PDB reference: 1uqr
Online 25 February 2004
Acta Cryst. (2004). D60, 472-478 [ doi:10.1107/S0907444903029767 ]
Synopsis: The glycoprotein rhamnogalacturonan acetylesterase has been crystallized in two different polymorphic modifications: an orthorhombic crystal form which appeared at pH 5.0 and a trigonal form which was formed at pH 4.5. The differences in crystal packing can be explained by the pH-dependent variation in the protonation state of glutamic acids on the protein surface.
PDB reference: 1pp4
Online 25 February 2004
Acta Cryst. (2004). D60, 479-485 [ doi:10.1107/S0907444904000174 ]
Synopsis: Complexes of two piperidine ligands provide the first non-peptide cyclophilin-inhibitor structures. Enzymatic solution studies show Ki values of greater than 20 mM.
Online 25 February 2004
Acta Cryst. (2004). D60, 486-492 [ doi:10.1107/S0907444904000423 ]
Synopsis: The crystal structure of the biotin carboxylase subunit of pyruvate carboxylase from A. aeolicus (PC-
) was determined at 2.2 Å resolution. One PC-
molecule is contained in the asymmetric unit with space group P21212; electron density for domain B was clearly shown in the final model.
PDB reference: 1ulz
Online 25 February 2004
Acta Cryst. (2004). D60, 493-498 [ doi:10.1107/S090744490400037X ]
Synopsis: The lobster crustacyanin C2 protein subunit structure is reported at 1.3 Å resolution. A search for chemical structure post-translational modifications was made using three B-factor plot evaluations, but none proved sensitive enough to explain the C2 protein chromatography signature differences from the homologous A1 or C1 protein subunits.
Online 25 February 2004
Acta Cryst. (2004). D60, 499-506 [ doi:10.1107/S0907444904000617 ]
Synopsis: An index Ras is proposed based on analysis of the Bijvoet differences of acentric and centric reflections to better estimate the accuracy and strength of the anomalous scattering signal in data.
Online 25 February 2004
Acta Cryst. (2004). D60, 507-511 [ doi:10.1107/S0907444904000034 ]
Synopsis: Crystal structures are reported for free and coenzyme A (CoA) bound forms of the YfdW protein from E. coli, a representative type III CoA transferase.
PDB references: 1pqy, 1q7e and 1q6y
Online 25 February 2004
Acta Cryst. (2004). D60, 512-514 [ doi:10.1107/S090744490302852X ]
Synopsis: Crystals of the Ca2+-discharged W92F mutant of obelin from Obelia longissima have been grown, representing the first crystallization of a photoprotein after the Ca2+-triggered bioluminescence and bound with product, coelenteramide.
Online 25 February 2004
Acta Cryst. (2004). D60, 515-517 [ doi:10.1107/S0907444904000721 ]
Synopsis: The small form of glucose-inhibited division protein A from T. thermophilus HB8 has been crystallized and its diffraction data have been collected to 1.65 Å resolution. Crystals belong to the trigonal space group P3121 or P3221.
Online 25 February 2004
Acta Cryst. (2004). D60, 518-520 [ doi:10.1107/S0907444903028300 ]
-turn crystal engineeringSynopsis: The acyl-homoserinelactone synthase LasI has been crystallized in space group F23, with unit-cell parameters a = b = c = 154.90 Å. Crystals were obtained using a
-turn engineering approach.
Online 25 February 2004
Acta Cryst. (2004). D60, 521-523 [ doi:10.1107/S0907444903028294 ]
Synopsis: The crystallizations of three different forms of the dimeric outer 5S subunit of transcarboxylase differ in their requirement for the addition of lithium sulfate.
Online 25 February 2004
Acta Cryst. (2004). D60, 524-527 [ doi:10.1107/S0907444903028488 ]
Synopsis: The E. coli yeiK gene product has been overexpressed in recombinant form and characterized as a pyrimidine nucleoside hydrolase. Crystals diffracting to 1.7 Å resolution are reported.
Online 25 February 2004
Acta Cryst. (2004). D60, 528-530 [ doi:10.1107/S0907444903028427 ]
Synopsis: Recombinant class I D-tagatose-1,6-bisphosphate aldolase from S. pyogenes was expressed in E. coli, purified and crystallized. Crystals of both native and selenomethionine isoforms were obtained and are suitable for structural analysis.
Online 25 February 2004
Acta Cryst. (2004). D60, 531-533 [ doi:10.1107/S0907444903028713 ]
Synopsis: Aes has been crystallized as an N-terminally His6-tagged protein both in the native form and with selenomethionine substitution.
Online 25 February 2004
Acta Cryst. (2004). D60, 534-536 [ doi:10.1107/S0907444903028877 ]
Synopsis: A novel bifunctional enzyme, phosphoribosyl isomerase, involved in both the histidine- and tryptophan-biosynthesis pathways, has been crystallized. Crystals diffract to 2 Å resolution and are suitable for X-ray structure determination.
Online 25 February 2004
Acta Cryst. (2004). D60, 537-538 [ doi:10.1107/S0907444903028919 ]
1,4Gal-releasing endo-
-galactosidase from Clostridium perfringensSynopsis: The unique clostridial endo-
-galactosidase (Endo-
-GalGnGa) capable of releasing the disaccharide GlcNAc
1,4Gal from O-glycans expressed in the gastric gland mucous cell-type mucin has been crystallized.
Online 25 February 2004
Acta Cryst. (2004). D60, 539-541 [ doi:10.1107/S090744490302907X ]
Synopsis: Focal adhesion protein 52 (FAP52) is a multidomain adaptor protein composed of an N-terminal
-helical domain and C-terminal SH3 domain connected by a predicted unstructured region. FAP52 was crystallized in two crystal forms and initial phase information was obtained from xenon-pressurized crystals using diffraction data collected at two softer X-ray wavelengths.
Online 25 February 2004
Acta Cryst. (2004). D60, 542-544 [ doi:10.1107/S0907444903029123 ]
Synopsis: Xylanase IV from T. reesei has been crystallized and X-ray diffraction data have been collected to 2.2 Å resolution.
Online 25 February 2004
Acta Cryst. (2004). D60, 545-549 [ doi:10.1107/S0907444903029305 ]
Synopsis: The extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6) has recently been crystallized in a new monoclinic crystal form. The new crystals diffract to better than 1.5 Å resolution and show significantly improved crystallographic properties as compared with the previous crystals of XT6 of the hexagonal form.
Online 25 February 2004
Acta Cryst. (2004). D60, 550-552 [ doi:10.1107/S0907444903029378 ]
Synopsis: Crystallographic analysis of the first complex between a PAS domain and another protein.
Online 25 February 2004
Acta Cryst. (2004). D60, 553-554 [ doi:10.1107/S0907444903029317 ]
Synopsis: Crystals of fructan exohydrolase IIa from C. intybus have been prepared and proved to be suitable for successful structural analysis.
Online 25 February 2004
Acta Cryst. (2004). D60, 555-557 [ doi:10.1107/S0907444903029330 ]
Synopsis: Crystals of two complexes of an endoxylanase inhibitor from T. aestivum L. with a family 11 xylanase have been prepared. The crystals of the complex TAXI I-A. niger xylanase as well as the crystals of TAXI I in complex with B. subtilis xylanase proved to be suitable for successful structural analysis.
Online 25 February 2004
Acta Cryst. (2004). D60, 558-560 [ doi:10.1107/S0907444903029494 ]
Synopsis: A novel integral membrane lipoprotein, Wza, from E. coli serotype O9a:K30 has been purified and crystallized.
Online 25 February 2004
Acta Cryst. (2004). D60, 561-563 [ doi:10.1107/S090744490302972X ]
Synopsis: AqpZ is a 24 kDa integral membrane protein that facilitates water movement across the plasma membrane of E. coli. The first crystallization and preliminary X-ray analysis of AqpZ are described in this study.
Online 25 February 2004
Acta Cryst. (2004). D60, 564-566 [ doi:10.1107/S0907444903029779 ]
Synopsis: The 36 kDa C-terminal domain of ParC from B. stearothermophilus has been crystallized in the trigonal space group P31 (or P32), with unit-cell parameters a = b = 83.5, c = 45.1 Å. A complete native data set to 2.0 Å has been collected.
Online 25 February 2004
Acta Cryst. (2004). D60, 567-568 [ doi:10.1107/S0907444904000265 ]
Synopsis: Human liver glyceraldehyde-3-phosphate dehydrogenase was purified and crystallized. Crystals belong to space group P21, with unit-cell parameters a = 63.23, b = 97.84, c = 84.23 Å,
= 104.1°, and show diffraction to 2.8 Å resolution.
Online 25 February 2004
Acta Cryst. (2004). D60, 569-571 [ doi:10.1107/S0907444904000058 ]
Synopsis: Macrophage/microglia-specific calcium-binding protein Iba1s from human and mouse were overexpressed and crystallized. A preliminary X-ray crystallographic analysis of the crystals is reported.
Online 25 February 2004
Acta Cryst. (2004). D60, 572-573 [ doi:10.1107/S090744490400006X ]
Synopsis: Monoclinic isomaltodextranase crystals which diffract X-rays to 1.8 Å resolution on a rotating-anode generator were grown from PEG 6000 and ammonium sulfate.
Online 25 February 2004
Acta Cryst. (2004). D60, 574-576 [ doi:10.1107/S0907444904000277 ]
Synopsis: A recombinant form of histidinol phosphate phosphatase from T. thermophilus HB8 has been expressed in E. coli, purified and crystallized in crystal forms I and II, belonging to space groups P21212 and C2221, respectively. Diffraction data were collected to 1.70 and 1.75 Å resolution for crystal forms I and II, respectively.
Online 25 February 2004
Acta Cryst. (2004). D60, 577-579 [ doi:10.1107/S0907444904000630 ]
Synopsis: Inorganic pyrophosphatase from the hyperthermophile P. horikoshii has been crystallized by the hanging-drop vapour-diffusion method at pH 5.0 using polyethyleneglycol 4000 as the precipitant.
Online 25 February 2004
Acta Cryst. (2004). D60, 580-582 [ doi:10.1107/S090744490400099X ]
Synopsis: Growth of hemihedrally twinned crystals of the small GTP-binding protein Rab9, which is implicated in vesicular transport from endosomes to the trans-Golgi network, in complex with GDP is described.
Online 25 February 2004
Acta Cryst. (2004). D60, 583-585 [ doi:10.1107/S0907444904001088 ]
-D-xylosidase from Geobacillus stearothermophilus T-6Synopsis: The crystallization and preliminary X-ray analysis of the
-D-xylosidase from G. stearothermophilus T-6, a family 39 glycoside hydrolase, is described. Purified native and selenomethionine-containing enzymes were crystallized and belong to space group P212121. The crystal diffracted X-rays to a resolution of 2.1 Å.
Online 25 February 2004
Acta Cryst. (2004). D60, 586-587 [ doi:10.1107/S0907444904001076 ]
-type cyclodextrin glycosyltransferase from Bacillus clarkiiSynopsis: A
-type cyclodextrin glycosyltransferase that produces
-cyclodextrin as the main product has been crystallized and analyzed by X-ray diffraction. Phasing was successfully carried out using the molecular-replacement method.
Online 25 February 2004
Acta Cryst. (2004). D60, 588-590 [ doi:10.1107/S0907444904001052 ]
12 packaging motorSynopsis: Native and selenomethionyl-labelled protein of the ssRNA-packaging ATPase from bacteriophage
12 crystallizes in space groups I222 and P1. Data have been collected for both space groups, to 2.5 and 2.0 Å resolution, respectively.
Online 25 February 2004
Acta Cryst. (2004). D60, 591-593 [ doi:10.1107/S0907444904001167 ]
Synopsis: NCAM Ig1-4, NCAM Ig1-5 and the whole extracellular part of L1 were crystallized. Preliminary data have been collected on NCAM Ig1-4 crystals belonging to space group P622 or P6322.
Online 25 February 2004
Acta Cryst. (2004). D60, 594-596 [ doi:10.1107/S0907444903029676 ]
Synopsis: Hexagonal crystals of unliganded tethered HIV-1 protease combined with the soaking method for the preparation of crystalline complexes have been shown to be suitable for the rapid discovery of protease inhibitors as drugs against AIDS.
Online 25 February 2004
Acta Cryst. (2004). D60, 597-600 [ doi:10.1107/S0907444903029202 ]
Synopsis: LySDB is a centralized web resource with a user-friendly search engine developed to study the properties of the lysozyme structures available in the literature.
Online 25 February 2004
Acta Cryst. (2004). D60, 601-605 [ doi:10.1107/S0907444903029664 ]
Synopsis: A crystallization strategy termed `microseed matrix screening' is described where the optimal conditions for nucleation versus extended lattice growth are not compatible.
PDB reference: 1rb7
Online 25 February 2004
Acta Cryst. (2004). D60, 606-609 [ doi:10.1107/S0907444903029585 ]
Synopsis: Perdeuterated yeast inorganic pyrophosphatase has been produced and crystallized. Neutron diffraction data have been recorded and the structure has been determined by X-ray diffraction.
Online 25 February 2004
Acta Cryst. (2004). D60, 610-612 [ doi:10.1107/S0907444903029640 ]
Synopsis: Broad-range buffer systems that consist of three component buffers can be substituted for a single buffer in crystallization trials, allowing pH and buffer type to be decoupled.
Online 25 February 2004
Acta Cryst. (2004). D60, 613-615 [ doi:10.1107/S0907444904000861 ]
Synopsis: The complex of lipoxygenase-3 with 4-nitrocatechol indicates His518 withdrawal from the iron coordination sphere and flexibility of the geometrical features of this site.
PDB reference: 1no3
Online 25 February 2004
Acta Cryst. (2004). D60, 616 [ doi:10.1107/S0907444904002616 ]
Synopsis: Comment on Yao et al. (2004), Acta Cryst. D60, 39-45.
Online 25 February 2004
Acta Cryst. (2004). D60, 617 [ doi:10.1107/S0907444904001271 ]
Synopsis: An erratum to the paper by Andreoletti et al. (2003), Acta Cryst. D59, 2163-2168.
Online 25 February 2004
Acta Cryst. (2004). D60, 618 [ doi:10.1107/S0907444904002598 ]
diffraction data only. ErratumSynopsis: An erratum to the paper by Olsen et al. (2004), Acta Cryst. D60, 250-255.
Online 25 February 2004
Acta Cryst. (2004). D60, 619 [ doi:10.1107/S0907444904002604 ]
Synopsis: A second erratum to the paper by Bellamy et al. Acta Cryst. (2000), D56, 986-995.
Online 25 February 2004
Acta Cryst. (2004). D60, 620 [ doi:10.1107/S0907444904002951 ]
Synopsis: An erratum to the paper by Dimasi et al. (2004), Acta Cryst. D60, 401-403.
Online 25 February 2004
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