Acta Crystallographica Section D

Biological Crystallography

Volume 69, Part 12 (December 2013)


scientific comment



Acta Cryst. (2013). D69, 2293-2295    [ doi:10.1107/S0907444913024621 ]

Timely deposition of macromolecular structures is necessary for peer review

R. P. Joosten, H. Soueidan, L. F. A. Wessels and A. Perrakis

Abstract: Most of the macromolecular structures in the Protein Data Bank (PDB), which are used daily by thousands of educators and scientists alike, are determined by X-ray crystallography. It was examined whether the crystallographic models and data were deposited to the PDB at the same time as the publications that describe them were submitted for peer review. This condition is necessary to ensure pre-publication validation and the quality of the PDB public archive. It was found that a significant proportion of PDB entries were submitted to the PDB after peer review of the corresponding publication started, and many were only submitted after peer review had ended. It is argued that clear description of journal policies and effective policing is important for pre-publication validation, which is key in ensuring the quality of the PDB and of peer-reviewed literature.

Keywords: Protein Data Bank; deposition; validation.


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[ doi:10.1107/S0907444913024621/dz5303sup1.pdf ]
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