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In the title compound, C14H19N4O3+·C5H7O4, trimethoprim (TMP) is protonated. In the glutarate anion, one of the two carboxyl­ic acid groups is deprotonated while the other exists as —COOH. The carboxyl group of the hydrogen glutarate ion makes a hydrogen-bonding pattern with N—H groups of the trimethoprim cation which is similar to the carboxyl­ate group (of Asp-27 of DHFR)-trimethoprim cation interaction observed in trimethoprim–DHFR complexes. Two TMP cations and two hydrogen glutarate anions are arranged about an inversion center so that complementary DDAA arrays of quadruple hydrogen-bonding patterns are formed. The hydrogen glutarate ion bridges the 2-amino and 4-amino groups of TMP. There are also carboxyl–carboxyl­ate hydrogen-bonding interactions involving a head-to-tail arrangement of hydrogen glutarate ions which leads to hydrogen-bonded supramolecular ribbons.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536801018001/cv6070sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536801018001/cv6070Isup2.hkl
Contains datablock I

CCDC reference: 177221

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.003 Å
  • R factor = 0.048
  • wR factor = 0.140
  • Data-to-parameter ratio = 8.8

checkCIF results

No syntax errors found

ADDSYM reports no extra symmetry


Red Alert Alert Level A:
REFLT_03 From the CIF: _diffrn_reflns_theta_max 70.90 From the CIF: _reflns_number_total 3203 TEST2: Reflns within _diffrn_reflns_theta_max Count of symmetry unique reflns 3958 Completeness (_total/calc) 80.92% Alert A: < 85% complete (theta max?)
Author response: Due to poor data we couldn't achieve more than 85%

1 Alert Level A = Potentially serious problem
0 Alert Level B = Potential problem
0 Alert Level C = Please check

Computing details top

Data collection: MolEN (Fair, 1990); cell refinement: MolEN; data reduction: MolEN; program(s) used to solve structure: SHELXS86 (Sheldrick, 1985); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1997) and PLATON (Spek, 1997); software used to prepare material for publication: PLATON.

2,4-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidin-1-ium glutarate top
Crystal data top
C14H19N4O3+·C5H7O4Z = 2
Mr = 422.44F(000) = 448
Triclinic, P1Dx = 1.367 Mg m3
a = 12.017 (2) ÅCu Kα radiation, λ = 1.5418 Å
b = 10.090 (3) ÅCell parameters from 40 reflections
c = 8.804 (4) Åθ = 3.8–70.9°
α = 84.430 (3)°µ = 0.89 mm1
β = 94.900 (3)°T = 293 K
γ = 104.590 (3)°Thin plate, pale yellow
V = 1026.1 (6) Å30.25 × 0.22 × 0.19 mm
Data collection top
Enraf-Nonius CAD-4
diffractometer
Rint = 0.000
Radiation source: fine-focus sealed tubeθmax = 70.9°, θmin = 3.8°
Graphite monochromatorh = 1414
ω–2θ scansk = 1212
3203 measured reflectionsl = 010
3203 independent reflections1 standard reflections every 100 min
3201 reflections with I > 2σ(I) intensity decay: none
Refinement top
Refinement on F2H-atom parameters not refined
Least-squares matrix: full w = 1/[σ2(Fo2) + (0.0866P)2 + 0.1793P]
where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.048(Δ/σ)max < 0.001
wR(F2) = 0.140Δρmax = 0.21 e Å3
S = 1.11Δρmin = 0.23 e Å3
3203 reflectionsAbsolute structure: Flack (1983)
363 parameters
Special details top

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.45141 (13)0.87527 (15)0.73650 (15)0.0585 (5)
O20.59069 (12)0.78210 (15)0.57704 (17)0.0572 (5)
O30.52998 (13)0.71564 (16)0.29046 (16)0.0600 (5)
N10.05252 (14)0.82591 (17)0.10391 (17)0.0491 (5)
N20.06864 (17)0.98838 (19)0.31074 (18)0.0575 (6)
N30.15813 (15)1.05315 (17)0.07878 (18)0.0508 (5)
N40.24980 (19)1.1136 (2)0.1481 (2)0.0693 (7)
C20.09384 (17)0.9571 (2)0.1627 (2)0.0461 (6)
C40.18378 (17)1.0157 (2)0.0689 (2)0.0490 (6)
C50.14042 (16)0.8791 (2)0.1401 (2)0.0471 (6)
C60.07496 (17)0.7889 (2)0.0470 (2)0.0481 (6)
C70.15670 (17)0.8417 (3)0.3090 (2)0.0568 (7)
C80.27701 (15)0.83263 (19)0.37225 (19)0.0438 (5)
C90.30932 (16)0.86674 (19)0.5205 (2)0.0452 (6)
C100.41372 (16)0.84784 (18)0.5896 (2)0.0442 (5)
C110.48561 (15)0.79685 (18)0.5096 (2)0.0447 (5)
C120.45284 (16)0.76436 (19)0.3595 (2)0.0445 (6)
C130.34798 (16)0.78229 (19)0.2912 (2)0.0450 (6)
C140.3789 (2)0.9274 (3)0.8200 (2)0.0637 (8)
C150.5871 (3)0.6471 (3)0.6435 (4)0.0887 (11)
C160.5029 (2)0.6836 (3)0.1364 (3)0.0718 (9)
O40.07782 (16)0.22219 (17)0.46913 (16)0.0730 (6)
O50.08143 (15)0.37575 (17)0.27020 (15)0.0680 (6)
O60.27767 (17)0.4052 (2)1.00442 (19)0.0808 (7)
O70.14593 (17)0.5178 (2)1.01426 (18)0.0769 (7)
C170.21973 (17)0.47756 (18)0.9423 (2)0.0467 (6)
C180.2212 (2)0.5289 (2)0.7757 (2)0.0599 (7)
C190.1775 (2)0.4110 (2)0.6763 (2)0.0597 (7)
C200.1615 (2)0.4566 (2)0.5084 (2)0.0579 (7)
C210.10397 (17)0.3416 (2)0.4102 (2)0.0514 (6)
H10.011880.765610.162150.0589*
H2A0.094261.070550.350750.0690*
H2B0.026820.926260.365870.0690*
H4A0.273541.195020.105140.0831*
H4B0.269131.096070.242850.0831*
H60.044140.699200.085670.0578*
H7A0.103860.753540.333050.0682*
H7B0.134080.908910.363390.0682*
H90.261580.902280.574290.0542*
H130.326190.760230.190990.0540*
H14A0.364281.009260.765870.0955*
H14B0.415630.948590.918850.0955*
H14C0.307280.859860.831960.0955*
H15A0.533050.624000.721870.1328*
H15B0.662250.643160.687450.1328*
H15C0.563710.583100.566180.1328*
H16A0.431880.614170.129540.1077*
H16B0.563560.650350.101260.1077*
H16C0.494990.764650.074150.1077*
H70.138950.475921.098920.1155*
H18A0.173180.593590.755350.0719*
H18B0.299210.576400.751710.0719*
H19A0.104310.356210.711160.0717*
H19B0.231410.352960.687980.0717*
H20A0.115850.524050.498460.0695*
H20B0.236410.501180.470630.0695*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0623 (9)0.0730 (9)0.0425 (7)0.0242 (7)0.0178 (6)0.0137 (6)
O20.0463 (8)0.0617 (8)0.0632 (9)0.0194 (6)0.0184 (6)0.0057 (7)
O30.0579 (8)0.0791 (10)0.0521 (8)0.0335 (7)0.0016 (7)0.0095 (7)
N10.0559 (10)0.0568 (9)0.0362 (8)0.0191 (8)0.0087 (7)0.0075 (7)
N20.0778 (12)0.0601 (10)0.0335 (8)0.0206 (9)0.0137 (8)0.0041 (7)
N30.0618 (10)0.0559 (9)0.0368 (8)0.0224 (8)0.0123 (7)0.0060 (7)
N40.0913 (14)0.0665 (11)0.0453 (9)0.0185 (10)0.0269 (9)0.0106 (8)
C20.0529 (10)0.0565 (11)0.0346 (9)0.0259 (9)0.0067 (7)0.0062 (8)
C40.0531 (10)0.0624 (11)0.0363 (9)0.0256 (9)0.0111 (8)0.0091 (8)
C50.0447 (10)0.0671 (12)0.0344 (9)0.0264 (9)0.0048 (7)0.0015 (8)
C60.0487 (10)0.0601 (11)0.0380 (9)0.0215 (9)0.0031 (8)0.0009 (8)
C70.0475 (11)0.0916 (16)0.0351 (10)0.0294 (10)0.0042 (8)0.0037 (9)
C80.0441 (9)0.0540 (10)0.0318 (8)0.0150 (8)0.0049 (7)0.0054 (7)
C90.0473 (10)0.0534 (10)0.0363 (9)0.0182 (8)0.0022 (7)0.0003 (7)
C100.0480 (10)0.0441 (9)0.0370 (9)0.0099 (8)0.0096 (7)0.0002 (7)
C110.0411 (9)0.0447 (9)0.0460 (10)0.0120 (8)0.0097 (8)0.0014 (8)
C120.0455 (10)0.0442 (9)0.0441 (10)0.0145 (8)0.0001 (8)0.0013 (7)
C130.0473 (10)0.0536 (10)0.0337 (9)0.0154 (8)0.0054 (7)0.0002 (7)
C140.0773 (15)0.0705 (14)0.0450 (11)0.0219 (12)0.0100 (10)0.0156 (10)
C150.0932 (19)0.0690 (16)0.105 (2)0.0394 (14)0.0495 (17)0.0099 (14)
C160.0840 (17)0.0896 (17)0.0559 (13)0.0452 (14)0.0034 (12)0.0126 (12)
O40.0981 (13)0.0656 (10)0.0387 (7)0.0026 (9)0.0159 (8)0.0004 (7)
O50.0904 (12)0.0756 (10)0.0283 (7)0.0067 (8)0.0054 (7)0.0004 (6)
O60.0981 (13)0.1065 (14)0.0543 (9)0.0601 (12)0.0022 (9)0.0001 (9)
O70.1041 (13)0.0958 (13)0.0474 (9)0.0590 (11)0.0186 (9)0.0171 (8)
C170.0562 (11)0.0426 (9)0.0386 (9)0.0085 (8)0.0055 (8)0.0076 (7)
C180.0796 (15)0.0553 (12)0.0394 (10)0.0083 (10)0.0014 (10)0.0017 (8)
C190.0742 (14)0.0598 (12)0.0357 (10)0.0023 (10)0.0059 (9)0.0030 (8)
C200.0698 (14)0.0612 (12)0.0377 (10)0.0083 (10)0.0001 (9)0.0026 (9)
C210.0522 (11)0.0654 (12)0.0319 (9)0.0075 (9)0.0003 (8)0.0012 (8)
Geometric parameters (Å, º) top
O1—C101.364 (2)C9—C101.396 (3)
O1—C141.411 (3)C10—C111.380 (3)
O2—C111.385 (2)C11—C121.392 (3)
O2—C151.421 (3)C12—C131.395 (3)
O3—C121.362 (3)C6—H60.9301
O3—C161.417 (3)C7—H7B0.9702
O4—C211.239 (3)C7—H7A0.9701
O5—C211.272 (2)C9—H90.9301
O6—C171.196 (3)C13—H130.9305
O7—C171.296 (3)C14—H14B0.9596
O7—H70.8203C14—H14A0.9605
N1—C61.368 (2)C14—H14C0.9604
N1—C21.359 (3)C15—H15B0.9603
N2—C21.338 (2)C15—H15C0.9595
N3—C21.321 (3)C15—H15A0.9599
N3—C41.350 (2)C16—H16B0.9600
N4—C41.317 (3)C16—H16A0.9597
N1—H10.8600C16—H16C0.9599
N2—H2B0.8601C17—C181.507 (3)
N2—H2A0.8599C18—C191.505 (3)
N4—H4B0.8603C19—C201.516 (3)
N4—H4A0.8599C20—C211.503 (3)
C4—C51.446 (3)C18—H18A0.9698
C5—C71.507 (3)C18—H18B0.9700
C5—C61.339 (3)C19—H19A0.9704
C7—C81.526 (3)C19—H19B0.9702
C8—C91.381 (3)C20—H20A0.9696
C8—C131.374 (3)C20—H20B0.9702
O1···O22.666 (2)C16···H132.5322
O1···C153.334 (4)C17···H16Avi3.0116
O2···O12.666 (2)C21···H15Bv2.9706
O2···O32.667 (2)C21···H7iv2.9517
O2···N4i3.053 (3)C21···H1iii2.6567
O3···O22.667 (2)C21···H2Biii2.8084
O3···C153.173 (4)H1···O4iii2.8259
O4···N2ii2.890 (3)H1···O5iii1.8633
O4···N2iii2.798 (3)H1···C21iii2.6567
O5···N1iii2.720 (3)H1···H2B2.2849
O5···C17iv3.396 (3)H2A···O4ix2.1266
O5···O7iv2.616 (3)H2B···H12.2849
O6···C16v3.355 (4)H2B···O4iii1.9420
O6···N4ii3.037 (3)H2B···C21iii2.8084
O7···O5vi2.616 (3)H4A···H15Bi2.5098
O7···C6vi3.109 (3)H4A···C15i2.9911
O2···H4Bi2.3962H4A···O6ix2.2081
O3···H15C2.7056H4B···C72.6171
O3···H14Ai2.7620H4B···C82.8094
O4···H19B2.7421H4B···H7B2.3848
O4···H19A2.5879H4B···O2i2.3962
O4···H2Biii1.9420H4B···C15i2.9418
O4···H1iii2.8259H6···H7A2.3077
O4···H2Aii2.1266H6···O7viii2.8803
O5···H7iv1.8175H6···O7iv2.5931
O5···H1iii1.8633H6···H19Aviii2.5579
O6···H16Avi2.6883H7···C21vi2.9517
O6···H15Bvii2.7757H7···O5vi1.8175
O6···H19B2.8673H7A···H19Aviii2.4814
O6···H4Aii2.2081H7A···H62.3077
O6···H16Bv2.4007H7B···N2x2.8652
O7···H6viii2.8803H7B···N42.8347
O7···H6vi2.5931H7B···H4B2.3848
N1···O5iii2.720 (3)H7B···H92.3111
N2···O4iii2.798 (3)H9···H14A2.2045
N2···O4ix2.890 (3)H9···C142.4773
N3···C14iv3.430 (3)H9···H7B2.3111
N4···O6ix3.037 (3)H9···H14C2.3126
N4···C83.363 (3)H13···C52.7743
N4···O2i3.053 (3)H13···C162.5322
N4···C15i3.301 (4)H13···H16A2.3006
N2···H7Bx2.8652H13···H16C2.3403
N4···H7B2.8347H14A···C92.6555
N4···H15Bi2.8911H14A···H92.2045
C2···C14iv3.530 (4)H14A···O3i2.7620
C2···C4x3.587 (3)H14A···C12i2.9430
C4···C2x3.587 (3)H14B···H16Cvi2.5298
C6···O7iv3.109 (3)H14B···H14Bxi2.4419
C8···N43.363 (3)H14C···C2vi2.9734
C10···C11i3.531 (3)H14C···C92.7383
C10···C10i3.554 (3)H14C···H92.3126
C11···C10i3.531 (3)H15A···C103.0577
C12···C14i3.561 (4)H15B···O6vii2.7757
C14···C12i3.561 (4)H15B···N4i2.8911
C14···C2vi3.530 (4)H15B···C21v2.9706
C14···N3vi3.430 (3)H15B···H4Ai2.5098
C15···O33.173 (4)H15C···O32.7056
C15···O13.334 (4)H15C···C122.9323
C15···N4i3.301 (4)H15C···H15Cv2.3012
C16···O6v3.355 (4)H16A···O6iv2.6883
C17···O5vi3.396 (3)H16A···C132.7377
C2···H14Civ2.9734H16A···C17iv3.0116
C5···H132.7743H16A···H132.3006
C7···H4B2.6171H16B···O6v2.4007
C8···H4B2.8094H16C···C132.7578
C9···H14A2.6555H16C···C14iv3.0914
C9···H14C2.7383H16C···H132.3403
C10···H18B3.0182H16C···H14Biv2.5298
C10···H15A3.0577H18A···H20A2.4250
C12···H15C2.9323H18B···C103.0182
C12···H14Ai2.9430H19A···O42.5879
C13···H16C2.7578H19A···H6viii2.5579
C13···H16A2.7377H19A···H7Aviii2.4814
C14···H16Cvi3.0914H19B···O42.7421
C14···H92.4773H19B···O62.8673
C15···H4Ai2.9911H20A···H18A2.4250
C15···H4Bi2.9418
C10—O1—C14116.40 (16)C10—C9—H9120.02
C11—O2—C15113.33 (19)C8—C9—H9120.05
C12—O3—C16117.51 (17)C12—C13—H13120.08
C17—O7—H7109.42C8—C13—H13120.09
C2—N1—C6120.61 (16)O1—C14—H14A109.48
C2—N3—C4117.39 (17)O1—C14—H14B109.53
C2—N1—H1119.68H14A—C14—H14B109.47
C6—N1—H1119.71H14A—C14—H14C109.40
C2—N2—H2A120.02O1—C14—H14C109.48
H2A—N2—H2B120.00H14B—C14—H14C109.47
C2—N2—H2B119.97O2—C15—H15B109.43
H4A—N4—H4B119.99O2—C15—H15C109.49
C4—N4—H4B119.98O2—C15—H15A109.46
C4—N4—H4A120.03H15A—C15—H15C109.53
N2—C2—N3119.60 (18)H15B—C15—H15C109.48
N1—C2—N3122.10 (16)H15A—C15—H15B109.45
N1—C2—N2118.30 (17)O3—C16—H16B109.43
N3—C4—C5123.49 (17)O3—C16—H16C109.44
N3—C4—N4115.62 (18)H16A—C16—H16B109.51
N4—C4—C5120.87 (17)H16A—C16—H16C109.51
C4—C5—C6114.99 (16)H16B—C16—H16C109.49
C6—C5—C7121.26 (19)O3—C16—H16A109.45
C4—C5—C7123.50 (18)O6—C17—O7121.99 (18)
N1—C6—C5121.36 (18)O6—C17—C18125.14 (19)
C5—C7—C8117.48 (17)O7—C17—C18112.85 (18)
C7—C8—C13122.08 (16)C17—C18—C19110.45 (15)
C9—C8—C13120.37 (17)C18—C19—C20113.27 (16)
C7—C8—C9117.35 (17)C19—C20—C21114.01 (16)
C8—C9—C10119.93 (17)O4—C21—C20119.42 (16)
O1—C10—C11115.66 (17)O5—C21—C20116.42 (17)
C9—C10—C11120.26 (16)O4—C21—O5124.11 (18)
O1—C10—C9124.08 (17)C17—C18—H18A109.55
C10—C11—C12119.34 (17)C17—C18—H18B109.54
O2—C11—C10120.07 (16)C19—C18—H18A109.58
O2—C11—C12120.57 (17)C19—C18—H18B109.57
O3—C12—C11114.75 (17)H18A—C18—H18B108.12
O3—C12—C13125.00 (16)C18—C19—H19A108.93
C11—C12—C13120.26 (17)C18—C19—H19B108.94
C8—C13—C12119.83 (16)C20—C19—H19A108.91
C5—C6—H6119.36C20—C19—H19B108.94
N1—C6—H6119.28H19A—C19—H19B107.70
C5—C7—H7A107.96C19—C20—H20A108.74
C5—C7—H7B107.95C19—C20—H20B108.71
C8—C7—H7B107.92C21—C20—H20A108.79
H7A—C7—H7B107.19C21—C20—H20B108.75
C8—C7—H7A107.91H20A—C20—H20B107.66
C14—O1—C10—C90.8 (3)C7—C8—C13—C12174.13 (19)
C14—O1—C10—C11179.96 (18)C7—C8—C9—C10173.84 (19)
C15—O2—C11—C1096.3 (2)C9—C8—C13—C120.6 (3)
C15—O2—C11—C1285.6 (2)C13—C8—C9—C101.1 (3)
C16—O3—C12—C11178.61 (19)C8—C9—C10—C110.9 (3)
C16—O3—C12—C131.5 (3)C8—C9—C10—O1178.28 (17)
C6—N1—C2—N2179.43 (19)C9—C10—C11—O2178.08 (16)
C6—N1—C2—N31.0 (3)O1—C10—C11—C12179.14 (16)
C2—N1—C6—C51.8 (3)O1—C10—C11—O22.7 (2)
C4—N3—C2—N11.3 (3)C9—C10—C11—C120.1 (3)
C2—N3—C4—C52.9 (3)O2—C11—C12—O31.5 (3)
C4—N3—C2—N2178.3 (2)C10—C11—C12—C130.5 (3)
C2—N3—C4—N4178.8 (2)O2—C11—C12—C13178.61 (17)
N3—C4—C5—C7172.1 (2)C10—C11—C12—O3179.63 (16)
N4—C4—C5—C6179.6 (2)O3—C12—C13—C8179.88 (18)
N4—C4—C5—C76.1 (3)C11—C12—C13—C80.2 (3)
N3—C4—C5—C62.2 (3)O7—C17—C18—C19113.2 (2)
C7—C5—C6—N1174.68 (19)O6—C17—C18—C1965.4 (3)
C4—C5—C7—C872.8 (3)C17—C18—C19—C20172.29 (19)
C6—C5—C7—C8113.2 (2)C18—C19—C20—C21172.7 (2)
C4—C5—C6—N10.2 (3)C19—C20—C21—O5175.3 (2)
C5—C7—C8—C1336.7 (3)C19—C20—C21—O42.1 (3)
C5—C7—C8—C9148.4 (2)
Symmetry codes: (i) x+1, y+2, z+1; (ii) x, y1, z+1; (iii) x, y+1, z; (iv) x, y, z1; (v) x+1, y+1, z+1; (vi) x, y, z+1; (vii) x+1, y+1, z+2; (viii) x, y+1, z+1; (ix) x, y+1, z1; (x) x, y+2, z; (xi) x+1, y+2, z+2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O5iii0.86001.86332.720 (3)174.16
N2—H2A···O4ix0.85992.12662.890 (3)147.64
N2—H2B···O4iii0.86011.94202.798 (3)173.23
N4—H4A···O6ix0.85992.20813.037 (3)161.81
N4—H4B···O2i0.86032.39623.053 (3)133.56
O7—H7···O5vi0.82031.81752.616 (3)164.12
C6—H6···O7iv0.93012.59313.109 (3)115.46
C16—H16B···O6v0.96002.40073.355 (4)172.79
Symmetry codes: (i) x+1, y+2, z+1; (iii) x, y+1, z; (iv) x, y, z1; (v) x+1, y+1, z+1; (vi) x, y, z+1; (ix) x, y+1, z1.
 

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