In the crystal structure of the title compound, C10H12O5·2H2O, the molecule of n-propyl 3,4,5-trihydroxybenzoate adopts an essentially planar conformation with a fully extended trans zigzag propyl ester group. The gallate residue has two intramolecular hydrogen bonds between the hydroxyl groups. The crystal structure is stabilized by hydrogen-bonding interactions, utilizing all available sites, and hydrophobic interactions involving the propyl groups.
Supporting information
CCDC reference: 182605
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.004 Å
- R factor = 0.046
- wR factor = 0.175
- Data-to-parameter ratio = 15.6
checkCIF results
No syntax errors found
ADDSYM reports no extra symmetry
Colorless needles were obtained by slow evaporation from an ethanol solution of
the compound.
The C-bound H atoms were placed in geometrically calculated positions and
included in the final refinement in the riding-model approximation with an
overall Uiso value of 1 × Uiso for phenyl H atoms and
1.25 × Uiso for methylene H atoms. The H atoms bound to O atoms
were located from a difference map but were included in idealized positions.
Data collection: MSC/AFC Diffractometer Control Software
(Molecular Structure Corporation and Rigaku Corporation, 1999a); cell refinement: MSC/AFC Diffractometer Control Software; data reduction: TEXSAN (Molecular Structure Corporation and Rigaku Corporation, 1999b); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); software used to prepare material for publication: TEXSAN.
Crystal data top
C10H12O5·2H2O | F(000) = 528.0 |
Mr = 248.23 | Dx = 1.423 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.7107 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 7.872 (2) Å | θ = 13.7–14.7° |
b = 7.560 (2) Å | µ = 0.12 mm−1 |
c = 19.836 (2) Å | T = 296 K |
β = 101.03 (1)° | Plate, colorless |
V = 1158.7 (4) Å3 | 0.30 × 0.30 × 0.20 mm |
Z = 4 | |
Data collection top
Rigaku AFC-5R diffractometer | θmax = 27.5°, θmin = 4° |
ω–2θ scans | h = 0→10 |
3072 measured reflections | k = 0→9 |
2660 independent reflections | l = −25→25 |
1259 reflections with I > 2σ(I) | 3 standard reflections every 150 reflections |
Rint = 0.029 | intensity decay: 0.8% |
Refinement top
Refinement on F2 | H-atom parameters not refined |
R[F2 > 2σ(F2)] = 0.046 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.175 | (Δ/σ)max = 0.001 |
S = 0.92 | Δρmax = 0.25 e Å−3 |
2660 reflections | Δρmin = −0.33 e Å−3 |
170 parameters | |
Crystal data top
C10H12O5·2H2O | V = 1158.7 (4) Å3 |
Mr = 248.23 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.872 (2) Å | µ = 0.12 mm−1 |
b = 7.560 (2) Å | T = 296 K |
c = 19.836 (2) Å | 0.30 × 0.30 × 0.20 mm |
β = 101.03 (1)° | |
Data collection top
Rigaku AFC-5R diffractometer | Rint = 0.029 |
3072 measured reflections | 3 standard reflections every 150 reflections |
2660 independent reflections | intensity decay: 0.8% |
1259 reflections with I > 2σ(I) | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 170 parameters |
wR(F2) = 0.175 | H-atom parameters not refined |
S = 0.92 | Δρmax = 0.25 e Å−3 |
2660 reflections | Δρmin = −0.33 e Å−3 |
Special details top
Refinement. Refinement using reflections with F2 > 0.0 σ(F2). The
weighted R-factor (wR) and goodness of fit (S) are based
on F2. R-factor (gt) are based on F. The threshold
expression of F2 > 2.0 σ(F2) is used only for calculating
R-factor (gt). |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.1926 (3) | 0.4697 (3) | 0.07910 (9) | 0.0393 (5) | |
O2 | 0.1930 (3) | 0.2208 (3) | 0.0177 (1) | 0.0489 (6) | |
O3 | 0.3694 (3) | 0.9591 (3) | −0.0636 (1) | 0.0466 (6) | |
O4 | 0.4363 (3) | 0.7937 (2) | −0.17767 (9) | 0.0384 (5) | |
O5 | 0.3947 (3) | 0.4404 (3) | −0.19476 (9) | 0.0389 (5) | |
O6 | 0.5779 (3) | 0.1108 (3) | −0.1840 (1) | 0.0447 (6) | |
O7 | 0.8956 (4) | 0.0726 (3) | −0.0936 (1) | 0.0592 (7) | |
C1 | 0.2725 (3) | 0.4944 (4) | −0.0280 (1) | 0.0303 (6) | |
C2 | 0.2925 (3) | 0.6771 (4) | −0.0181 (1) | 0.0324 (6) | |
C3 | 0.3451 (4) | 0.7785 (3) | −0.0677 (1) | 0.0315 (6) | |
C4 | 0.3820 (3) | 0.7012 (3) | −0.1273 (1) | 0.0283 (6) | |
C5 | 0.3599 (3) | 0.5196 (3) | −0.1373 (1) | 0.0278 (6) | |
C6 | 0.3063 (4) | 0.4162 (4) | −0.0877 (1) | 0.0318 (6) | |
C7 | 0.2158 (4) | 0.3802 (4) | 0.0241 (1) | 0.0324 (6) | |
C8 | 0.1394 (4) | 0.3716 (4) | 0.1347 (1) | 0.0349 (6) | |
C9 | 0.1315 (4) | 0.4998 (4) | 0.1913 (1) | 0.0415 (7) | |
C10 | 0.0713 (5) | 0.4107 (5) | 0.2512 (2) | 0.0510 (9) | |
H2 | 0.2704 | 0.7293 | 0.0218 | 0.0405* | |
H3 | 0.3252 | 0.9987 | −0.0325 | 0.0698* | |
H4 | 0.4596 | 0.8953 | −0.1646 | 0.0576* | |
H5 | 0.4102 | 0.5163 | −0.2225 | 0.0583* | |
H6 | 0.2928 | 0.2948 | −0.0941 | 0.0398* | |
H8A | 0.2221 | 0.2785 | 0.1508 | 0.0436* | |
H8B | 0.0269 | 0.3181 | 0.1190 | 0.0436* | |
H9A | 0.0525 | 0.5950 | 0.1740 | 0.0518* | |
H9B | 0.2452 | 0.5508 | 0.2070 | 0.0518* | |
H10A | −0.0400 | 0.3576 | 0.2355 | 0.0638* | |
H10B | 0.0628 | 0.4972 | 0.2859 | 0.0638* | |
H10C | 0.1530 | 0.3211 | 0.2702 | 0.0638* | |
H14 | 0.542 (5) | 0.216 (3) | −0.188 (2) | 0.0765* | |
H15 | 0.674 (4) | 0.117 (5) | −0.156 (2) | 0.0765* | |
H16 | 0.981 (4) | 0.125 (5) | −0.069 (2) | 0.0765* | |
H17 | 0.884 (5) | −0.021 (4) | −0.070 (2) | 0.0765* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.056 (1) | 0.037 (1) | 0.0301 (10) | −0.0032 (10) | 0.0212 (9) | 0.0034 (9) |
O2 | 0.076 (2) | 0.036 (1) | 0.041 (1) | −0.012 (1) | 0.027 (1) | −0.0013 (9) |
O3 | 0.078 (2) | 0.026 (1) | 0.040 (1) | −0.006 (1) | 0.024 (1) | −0.0075 (9) |
O4 | 0.060 (1) | 0.0259 (10) | 0.0329 (10) | −0.0054 (10) | 0.0189 (9) | −0.0012 (8) |
O5 | 0.063 (1) | 0.0275 (10) | 0.033 (1) | −0.0008 (9) | 0.0243 (10) | −0.0016 (8) |
O6 | 0.067 (2) | 0.027 (1) | 0.042 (1) | −0.004 (1) | 0.016 (1) | 0.0005 (9) |
O7 | 0.079 (2) | 0.046 (1) | 0.052 (1) | −0.010 (1) | 0.009 (1) | 0.003 (1) |
C1 | 0.033 (1) | 0.032 (1) | 0.027 (1) | −0.001 (1) | 0.008 (1) | 0.003 (1) |
C2 | 0.036 (2) | 0.036 (1) | 0.027 (1) | −0.001 (1) | 0.010 (1) | −0.003 (1) |
C3 | 0.038 (2) | 0.025 (1) | 0.031 (1) | −0.002 (1) | 0.005 (1) | −0.004 (1) |
C4 | 0.031 (1) | 0.028 (1) | 0.027 (1) | −0.001 (1) | 0.007 (1) | 0.002 (1) |
C5 | 0.031 (1) | 0.027 (1) | 0.026 (1) | 0.003 (1) | 0.007 (1) | −0.001 (1) |
C6 | 0.037 (2) | 0.025 (1) | 0.035 (1) | −0.003 (1) | 0.009 (1) | −0.001 (1) |
C7 | 0.034 (2) | 0.036 (2) | 0.029 (1) | −0.003 (1) | 0.008 (1) | 0.003 (1) |
C8 | 0.042 (2) | 0.037 (1) | 0.029 (1) | −0.002 (1) | 0.016 (1) | 0.005 (1) |
C9 | 0.054 (2) | 0.042 (2) | 0.031 (1) | −0.007 (1) | 0.014 (1) | 0.001 (1) |
C10 | 0.066 (2) | 0.057 (2) | 0.034 (2) | 0.001 (2) | 0.021 (2) | 0.005 (1) |
Geometric parameters (Å, º) top
O1—C7 | 1.326 (3) | C2—C3 | 1.373 (4) |
O1—C8 | 1.456 (4) | C2—H2 | 0.930 |
O2—C7 | 1.221 (4) | C3—C4 | 1.397 (4) |
O3—C3 | 1.379 (3) | C4—C5 | 1.393 (4) |
O3—H3 | 0.820 | C5—C6 | 1.385 (4) |
O4—C4 | 1.354 (3) | C6—H6 | 0.930 |
O4—H4 | 0.820 | C8—C9 | 1.493 (4) |
O5—C5 | 1.362 (3) | C8—H8A | 0.970 |
O5—H5 | 0.820 | C8—H8B | 0.970 |
O6—H14 | 0.84 (2) | C9—C10 | 1.519 (4) |
O6—H15 | 0.85 (4) | C9—H9A | 0.970 |
O7—H16 | 0.85 (4) | C9—H9B | 0.970 |
O7—H17 | 0.86 (3) | C10—H10A | 0.960 |
C1—C2 | 1.400 (4) | C10—H10B | 0.960 |
C1—C6 | 1.393 (4) | C10—H10C | 0.960 |
C1—C7 | 1.480 (4) | | |
| | | |
O1···C5i | 3.491 (3) | O4···O6vii | 3.056 (3) |
O1···C4i | 3.546 (3) | O4···O5vii | 3.270 (3) |
O1···O7i | 3.552 (3) | O4···C8i | 3.514 (4) |
O2···O7ii | 2.842 (3) | O4···C9viii | 3.545 (3) |
O2···O3iii | 3.049 (3) | O5···O6vii | 2.773 (3) |
O2···O7iv | 3.104 (3) | O7···C8ii | 3.454 (4) |
O2···C3i | 3.581 (4) | O7···C2i | 3.456 (4) |
O3···O3v | 2.997 (4) | C1···C1i | 3.543 (5) |
O3···O6vi | 3.349 (3) | C2···C6i | 3.512 (4) |
O3···C6vi | 3.511 (3) | C4···C7i | 3.481 (4) |
O4···O6vi | 2.657 (3) | | |
| | | |
C7—O1—C8 | 117.9 (2) | C5—C6—H6 | 120.1 |
C3—O3—H3 | 109.5 | O1—C7—O2 | 123.3 (3) |
C4—O4—H4 | 109.5 | O1—C7—C1 | 112.6 (2) |
C5—O5—H5 | 109.5 | O2—C7—C1 | 124.1 (3) |
H14—O6—H15 | 104 (4) | O1—C8—C9 | 107.4 (2) |
H16—O7—H17 | 103 (4) | O1—C8—H8A | 110.3 |
C2—C1—C6 | 120.2 (2) | O1—C8—H8B | 110.2 |
C2—C1—C7 | 121.2 (2) | C9—C8—H8A | 110.2 |
C6—C1—C7 | 118.5 (2) | C9—C8—H8B | 110.2 |
C1—C2—C3 | 119.5 (2) | H8A—C8—H8B | 108.5 |
C1—C2—H2 | 120.3 | C8—C9—C10 | 111.4 (3) |
C3—C2—H2 | 120.3 | C8—C9—H9A | 109.3 |
O3—C3—C2 | 124.6 (2) | C8—C9—H9B | 109.3 |
O3—C3—C4 | 114.6 (2) | C10—C9—H9A | 109.3 |
C2—C3—C4 | 120.8 (2) | C10—C9—H9B | 109.3 |
O4—C4—C3 | 123.7 (2) | H9A—C9—H9B | 108.0 |
O4—C4—C5 | 116.9 (2) | C9—C10—H10A | 109.5 |
C3—C4—C5 | 119.5 (2) | C9—C10—H10B | 109.5 |
O5—C5—C4 | 120.9 (2) | C9—C10—H10C | 109.5 |
O5—C5—C6 | 119.0 (2) | H10A—C10—H10B | 109.5 |
C4—C5—C6 | 120.2 (2) | H10A—C10—H10C | 109.5 |
C1—C6—C5 | 119.8 (2) | H10B—C10—H10C | 109.5 |
C1—C6—H6 | 120.1 | | |
| | | |
O1—C7—C1—C2 | −1.6 (3) | O5—C5—C6—C1 | 179.1 (2) |
O1—C7—C1—C6 | 178.2 (2) | C1—C2—C3—C4 | −1.3 (4) |
O1—C8—C9—C10 | 178.2 (2) | C1—C6—C5—C4 | 0.7 (4) |
O2—C7—O1—C8 | 0.8 (4) | C1—C7—O1—C8 | −179.0 (2) |
O2—C7—C1—C2 | 178.6 (3) | C2—C1—C6—C5 | 0.0 (4) |
O2—C7—C1—C6 | −1.5 (4) | C2—C3—C4—C5 | 2.0 (4) |
O3—C3—C2—C1 | −179.9 (2) | C3—C2—C1—C6 | 0.2 (4) |
O3—C3—C4—O4 | −0.4 (4) | C3—C2—C1—C7 | −179.9 (2) |
O3—C3—C4—C5 | −179.2 (2) | C3—C4—C5—C6 | −1.7 (4) |
O4—C4—C3—C2 | −179.2 (2) | C5—C6—C1—C7 | −179.8 (2) |
O4—C4—C5—O5 | 1.0 (3) | C7—O1—C8—C9 | 177.1 (2) |
O4—C4—C5—C6 | 179.4 (2) | C7—O1—C8—C9 | 177.1 (2) |
O5—C5—C4—C3 | 180.0 (2) | | |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y, −z; (iii) x, y−1, z; (iv) x−1, y, z; (v) −x+1, −y+2, −z; (vi) x, y+1, z; (vii) −x+1, y+1/2, −z−1/2; (viii) x, −y+3/2, z−1/2. |
Hydrogen-bond geometry (º) top
D—H···A | D—H···A |
O4—H4···O3 | 113 |
O5—H5···O4 | 113 |
O3—H3···O2vi | 152 |
O5—H5···O6vii | 155 |
O6—H14···O5 | 168 (4) |
O6—H15···O7 | 168 (4) |
O7—H16···O2ix | 166 (4) |
O7—H17···O2ii | 167 |
Symmetry codes: (ii) −x+1, −y, −z; (vi) x, y+1, z; (vii) −x+1, y+1/2, −z−1/2; (ix) x+1, y, z. |
Experimental details
Crystal data |
Chemical formula | C10H12O5·2H2O |
Mr | 248.23 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 7.872 (2), 7.560 (2), 19.836 (2) |
β (°) | 101.03 (1) |
V (Å3) | 1158.7 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.30 × 0.30 × 0.20 |
|
Data collection |
Diffractometer | Rigaku AFC-5R diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3072, 2660, 1259 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.650 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.175, 0.92 |
No. of reflections | 2660 |
No. of parameters | 170 |
No. of restraints | ? |
H-atom treatment | H-atom parameters not refined |
Δρmax, Δρmin (e Å−3) | 0.25, −0.33 |
Selected geometric parameters (Å, º) topO1—C7 | 1.326 (3) | O4—C4 | 1.354 (3) |
O1—C8 | 1.456 (4) | O5—C5 | 1.362 (3) |
O2—C7 | 1.221 (4) | C1—C7 | 1.480 (4) |
O3—C3 | 1.379 (3) | | |
| | | |
C7—O1—C8 | 117.9 (2) | O5—C5—C4 | 120.9 (2) |
C6—C1—C7 | 118.5 (2) | O5—C5—C6 | 119.0 (2) |
O3—C3—C2 | 124.6 (2) | O1—C7—O2 | 123.3 (3) |
O3—C3—C4 | 114.6 (2) | O1—C7—C1 | 112.6 (2) |
O4—C4—C3 | 123.7 (2) | O2—C7—C1 | 124.1 (3) |
O4—C4—C5 | 116.9 (2) | | |
| | | |
O1—C7—C1—C6 | 178.2 (2) | O2—C7—C1—C2 | 178.6 (3) |
O1—C8—C9—C10 | 178.2 (2) | C1—C7—O1—C8 | −179.0 (2) |
O2—C7—O1—C8 | 0.8 (4) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H···A |
O4—H4···O3 | 113 |
O5—H5···O4 | 113 |
O3—H3···O2i | 152 |
O5—H5···O6ii | 155 |
O6—H14···O5 | 168 (4) |
O6—H15···O7 | 168 (4) |
O7—H16···O2iii | 166 (4) |
O7—H17···O2iv | 167 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z−1/2; (iii) x+1, y, z; (iv) −x+1, −y, −z. |
Gallic acid (3,4,5-trihydroxybenzoic acid) is a naturally occurring plant phenol having antitumor and antioxidative activity. It induces apotosis in human myelogenenous leukemic cell line (Sakaguchi et al., 1999; Satoh & Sakagami, 1997) and it is suggested that the hydroxyl substituent plays an important role in its biological activity. We intend to study the structural characteristics of gallic acid derivatives with amphiphili characteristic by systematically adding alkyl groups. The structure of the n-propyl ester of gallic acid (propyl gallate) as its dihydrate, (I), is reported here. The structure of the closely related gallic acid octyl ester (octyl gallate) with long alkyl group has been determined (Jeffrey & Yeon, 1990).
The molecular structure of (I) is essentially planar with a fully extended trans-zigzag propyl ester group, as shown in Fig. 1. In the molecule, all H atoms of the three hydroxy groups are oriented in the same direction, forming two intramolecular hydrogen bonds between a pair of hydroxyl groups at the 3- and 4-positions, and at the 4- and 5-positions. This intramolecular hydrogen-bonding scheme resembles that found in gallic acid monohydrate (Okabe et al., 2001), but is different from that in its polymorphic form (Jiang et al., 2000). In the latter, one of the three H atoms of the hydroxy groups is oriented in the opposite direction to the others so that only one intramolecular hydrogen bond is present.
In the crystal packing, the methyl groups of the propyl ester regions interact with each other (Fig. 2). The interactions between the methyl groups of the short alkyl groups is different from the interdigitizing interaction with long alkyl chains of octyl gallate (Jeffrey & Yeon, 1990). There are no stacking interactions between the phenyl rings. The benzene ring is shifted slightly towards the ester bond, as reflected by the C1···C1i separation [symmetry code: (i) 1 - x, 1 - y, -z] of 3.542 (5) Å and the separations O2···C3i of 3.580 (4) Å and O1···C5i of 3.492 (3) Å. All of the available hydrogen bonds are present as intra- and intermolecular interactions and are detailed in Table 2.