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Volume 59 
Part 1 
Pages m20-m22  
January 2003  

Received 18 November 2002
Accepted 28 November 2002
Online 19 December 2002

Key indicators
Single-crystal X-ray study
T = 293 K
Mean [sigma](C-C) = 0.003 Å
R = 0.031
wR = 0.082
Data-to-parameter ratio = 16.6
Details

Aqua(pyridine-[kappa]N)(N-salicylidenetyrosinato-[kappa]3O,N,O')copper(II)

aDepartment of Chemistry, Howard University, 525 College Street NW, Washington, DC 20059, USA, and bDepartment of Chemistry, University of Wollongong, NSW 2522, Australia
Correspondence e-mail: butcher@harker.nrl.navy.mil

The tridentate Schiff base ligand derived from the condensation of salicylaldehyde and DL-tyrosine, in the presence of pyridine, forms a square-pyramidal five-coordinate Cu complex, [Cu(C16H13NO4)(C5H5N)(H2O)], with a water molecule occupying the apical site.

Comment

Galactose oxidase is a type-II Cu protein that catalyses the oxidation of primary alcohols to aldehydes with concomitant reduction of molecular oxygen (Whittaker, 1994[Whittaker, J. W. (1994). Metal Ions in Biological Systems, Vol. 30, edited by H. Sigel and A. Sigel, pp. 315-360. New York: Marcel Dekker.]). Its crystal structure (Ito et al., 1994[Ito, N., Phillips, S. E. V., Yadav, K. D. S. & Knowles, P. F. (1994). J. Mol. Biol. 238, 794-814.]) reveals a unique mononuclear Cu site with two N donors (from histidine imidazole groups), two O donors (one axial and one equatorial tyrosine group), and an exogenous water or acetate molecule, all arranged in a distorted square-pyramidal coordination. Several different theories have been proposed to explain how galactose oxidase, which contains a single Cu atom, can catalyse a two-electron redox reaction. The currently accepted theory (Whittaker & Whittaker, 2001[Whittaker, M. M. & Whittaker, J. W. (2001). Biochemistry, 40, 7140-7148.]) suggests that the `inactive' form of galactose oxidase is oxidized by the loss of one electron to produce the `active' form, which contains a tyrosine (tyrosine 272) free radical ion coupled to the CuII ion. The active form is then reduced to the CuI species and the alcohol oxidized to the corresponding aldehyde.[link]

[Scheme 1]

There has been considerable interest in the study of model compounds of galactose oxidase in recent years (Kruse et al., 2002[Kruse, T., Weyhermuller, T. & Wieghardt, K. (2002). Inorg. Chim. Acta, 331, 81-89.]; Shimazaki et al., 2002[Shimazaki, Y., Huth, S., Hirota, S. & Yamauchi, O. (2002). Inorg. Chim. Acta, 331, 168-170.]; Thomas et al., 2002[Thomas, F., Gellon, G., Gautier-Luneau, I., Saint-Aman, E. & Pierre, J.-L. (2002). Angew. Chem. Int. Ed. 41, 3047-3050.]). One group of compounds that have attracted considerable interest consists of five-coordinate Cu complexes with tridentate Schiff base ligands derived from the condensation of amino acids with substituted salicylaldehydes. In this type of complex, the Cu coordination sphere also contains a monodentate Lewis base. With two exceptions (Plesch et al., 1997[Plesch, G., Friebel, C., Warda, S. A., Sivy, J. & Svajlenova, O. (1997). Transition Met. Chem. 22, 433-440.]; Sivy et al., 1994[Sivy, J., Kettmann, V., Kratsmar-Smogrovic, J., Svajlenova, O. & Breza, M. (1994). Z. Naturforsch. Teil C, 49, 571-578.]), X-ray crystallographic studies have shown that these CuII compounds contain CuII in a distorted square-pyramidal environment and fit into three main types:

(i) monomeric with a water molecule occupying the fifth coordination site (Dawes et al., 1982[Dawes, H. M., Waters, J. M. & Waters, T. N. (1982). Inorg. Chim. Acta, 66, 29-36.]; Fujimaki et al., 1971[Fujimaki, H., Oonishi, I., Muto, F., Nakahara, A. & Komiyama, Y. (1971). Bull. Chem. Soc. Jpn, 44, 28-34.]; Garcia-Raso et al., 1996[Garcia-Raso, A., Fiol, J. J., Badenas, F. & Quiros, M. (1996). Polyhedron, 15, 4407-4413.]; Korhonen & Hamalainen, 1979[Korhonen, K. & Hamalainen, R. (1979). Acta Chem. Scand. Ser. A, 33, 569-575.]; Ueki et al., 1969[Ueki, T., Ashida, T., Sasada, Y. & Kakudo, M. (1969). Acta Cryst. B25, 328-335.]; Warda et al., 1996[Warda, S. A., Friebel, C., Sivy, J., Plesch, G. & Svajlenova, O. (1996). Acta Cryst. C52, 2763-2766.]; Warda, 1997g[Warda, S. A. (1997g). Acta Cryst. C53, 1759-1761.]; Warda, 1998a[Warda, S. A. (1998a). Acta Cryst. C54, 187-189.],d[Warda, S. A. (1998d). Acta Cryst. C54, 768-770.],e[Warda, S. A. (1998e). Acta Cryst. C54, 1236-1238.],f[Warda, S. A. (1998f). Acta Cryst. C54, 1754-1755.]);

(ii) dimeric with an adjacent phenolic O atom occupying the fifth coordination site (Davies, 1984[Davies, J. E. (1984). Acta Cryst. C40, 903-904.]; Hamalainen et al., 1978[Hamalainen, R., Turpeinen, U., Ahlgren, M. & Rantala, M. (1978). Acta Chem. Scand. Ser. A, 32, 549-553.]; Hill & Warda, 1999[Hill, E. & Warda, S. A. (1999). Acta Cryst. C55, 1431-1434.]; Warda, 1997e[Warda, S. A. (1997e). Acta Cryst. C53, 1588-1590.]; Warda, 1998b[Warda, S. A. (1998b). Acta Cryst. C54, 302-304.],c[Warda, S. A. (1998c). Acta Cryst. C54, 304-306.],g[Warda, S. A. (1998g). Z. Kristallogr. New Cryst. Struct. 213, 771-772.]; Warda, 1999[Warda, S. A. (1999). Z. Kristallogr. New Cryst. Struct. 214, 77-78.]; Warda et al., 1998[Warda, S. A., Dahlke, P., Wocadlo, S., Massa, W. & Friebel, C. (1998). Inorg. Chim. Acta 268, 117-124.]);

(iii) polymeric with the fifth coordination site occupied by an adjacent carboxyl O atom (Ueki et al., 1967[Ueki, T., Ashida, T., Sasada, Y. & Kakudo, M. (1967). Acta Cryst. 22, 870-878.]; Kettman et al., 1993[Kettman, V., Fresova, E., Blahova, M. & Kratsmar-Smogrovic, J. (1993). Acta Cryst. C49, 1932-1934.]; Korhonen et al., 1984[Korhonen, K., Hamalainen, R. & Turpeinen, U. (1984). Acta Cryst. C40, 1175-1177.]; Plesch et al., 1998[Plesch, G., Kettman, V., Sivy, J., Svajlenova, O. & Friebel, C. (1998). Polyhedron, 17, 539-545.]; Warda et al., 1997[Warda, S. A., Friebel, C., Sivy, J., Plesch, G. & Blahova, M. (1997). Acta Cryst. C53, 50-54.]; Warda, 1997a[Warda, S. A. (1997a). Acta Cryst. C53, 1186-1188.],b[Warda, S. A. (1997b). Acta Cryst. C53, 697-699.],c[Warda, S. A. (1997c). Acta Cryst. C53, 1010-1011.],d[Warda, S. A. (1997d). Acta Cryst. C53, 1184-1186.],f[Warda, S. A. (1997f). Acta Cryst. C53, 1590-1593.]; Sivy et al., 1990[Sivy, J., Kettmann, V., Kratsmar-Smogrovic, J., Svajlenova, O., Friebel, C. & Plesch, G. (1990). Z. Anorg. Allg. Chem. 583, 55-66.]).

The tridentate Schiff base ligand derived from the condensation of salicylaldehyde and DL-tyrosine, in the presence of pyridine, forms a square pyramidal five-coordinate Cu complex of type (i) with a water molecule occupying the apical site at a distance of 2.375 (2) Å. Cu is displaced by 0.1861 (8) Å from the basal plane formed by O1, O2, N, and N1P. The Cu-O1, Cu-O2, and Cu-N1 bond distances in the equatorial plane [1.919 (1), 1.989 (1), and 1.939 (2) Å, respectively] do not differ significantly from those of similar dinuclear compounds mentioned above. Both the water molecule and the tyrosine phenolic group participate in strong hydrogen bonding interactions with the C=O groups of adjoining molecules, while the water molecule also forms a hydrogen bond to O1 from an adjoining molecule (see Table 2[link] and Fig. 2[link]).

[Figure 1]
Figure 1
View of the title complex, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 20% probability level. H atoms are represented by circles of arbitrary size.
[Figure 2]
Figure 2
The molecular packing viewed along the a axis.

Experimental

The title complex was synthesized in two stages. In the first stage, 10 g of DL-tyrosine and an equimolar amount of sodium hydroxide were dissolved in 300 ml of hot water. To this solution was added an equimolar quantity of copper sulfate pentahydrate dissolved in 100 ml of water. The blue-purple compound [Cu(tyr)2nH2O precipitated on cooling the solution. 6 g of this compound, two mole equivalents of salicylaldehyde, triethylamine (10 ml) and pyridine (10 ml) were refluxed in methanol for one hour. The hot solution was filtered and allowed to stand until the dark-green product precipitated from solution. X-ray quality crystals were grown by slow evaporation from a methanol/acetonitrile solution.

Crystal data
  • [Cu(C16H13NO4)(C5H5N)(H2O)]

  • Mr = 443.93

  • Triclinic, [P\overline 1]

  • a = 10.0319 (13) Å

  • b = 10.0487 (11) Å

  • c = 10.1973 (14) Å

  • [alpha] = 81.973 (10)°

  • [beta] = 72.624 (9)°

  • [gamma] = 78.310 (9)°

  • V = 957.3 (2) Å3

  • Z = 2

  • Dx = 1.540 Mg m-3

  • Mo K[alpha] radiation

  • Cell parameters from 42 reflections

  • [theta] = 4.8-17.3°

  • [mu] = 1.18 mm-1

  • T = 293 (2) K

  • Plate, blue

  • 0.58 × 0.46 × 0.15 mm

Data collection
  • Siemens P4S diffractometer

  • 2[theta]/[omega] scans

  • Absorption correction: by integration (Wuensch & Prewett, 1965[Wuensch B. & Prewett, C. (1965). Z. Kristallogr. 122, 24-59.]) Tmin = 0.688, Tmax = 0.883

  • 4594 measured reflections

  • 4347 independent reflections

  • 3782 reflections with I > 2[sigma](I)

  • Rint = 0.021

  • [theta]max = 27.5°

  • h = 0 [rightwards arrow] 12

  • k = -12 [rightwards arrow] 13

  • l = -12 [rightwards arrow] 13

  • 3 standard reflections every 97 reflections intensity decay: 0.1%

Refinement
  • Refinement on F2

  • R[F2 > 2[sigma](F2)] = 0.031

  • wR(F2) = 0.082

  • S = 1.06

  • 4347 reflections

  • 262 parameters

  • H-atom parameters constrained

  • w = 1/[[sigma]2(Fo2) + (0.0343P)2 + 0.4004P] where P = (Fo2 + 2Fc2)/3

  • ([Delta]/[sigma])max = 0.001

  • [Delta][rho]max = 0.35 e Å-3

  • [Delta][rho]min = -0.27 e Å-3

Table 1
Selected geometric parameters (Å, °)

Cu-O1 1.9187 (14)
Cu-N1 1.9394 (15)
Cu-O2 1.9889 (14)
Cu-N1P 2.0086 (16)
Cu-O1W 2.3745 (15)
O1-Cu-N1 93.61 (6)
O1-Cu-O2 164.17 (6)
N1-Cu-O2 83.13 (6)
O1-Cu-N1P 90.30 (6)
N1-Cu-N1P 172.18 (7)
O2-Cu-N1P 91.28 (6)
O1-Cu-O1W 99.82 (6)
N1-Cu-O1W 95.24 (6)
O2-Cu-O1W 95.91 (6)
N1P-Cu-O1W 90.76 (6)

Table 2
Hydrogen-bonding geometry (Å, °)

D-H...A D-H H...A D...A D-H...A
O1W-H1W1...O1i 0.87 1.92 2.793 (2) 175
O1W-H1W2...O3ii 0.86 2.07 2.930 (2) 176
O4-H4...O3iii 0.82 1.89 2.705 (2) 175
Symmetry codes: (i) -x,-y,-z; (ii) 1-x,-y,-z; (iii) x,y,z-1.

All H atoms were included in calculated positions, with C-H distances ranging from 0.93 to 0.98 Å. The H atoms were then included in the refinement in riding-motion approximation, with Uiso = 1.2Ueq of the carrier atom. The H atoms of the coordinated water molecule were located in a difference Fourier map and were refined with restrained O-H distances but an unrestrained H-O-H angle.

Data collection: XSCANS (Siemens, 1994[Siemens (1994). XSCANS. Version 2.10. Siemens Analytical X-ray Instruments Inc. Madison, Wisconsin, USA. (Current suppliers: Bruker AXS Inc., Madison Wisconsin, USA.)]); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXTL (Sheldrick, 1997[Sheldrick, G. M. (1997). SHELXTL. Version 5.10. Bruker AXS Inc., Madison Wisconsin, USA.]); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Acknowledgements

RJB acknowledges the DoD ONR program for funds to upgrade the diffractometer.

References

Davies, J. E. (1984). Acta Cryst. C40, 903-904. [CrossRef] [details]
Dawes, H. M., Waters, J. M. & Waters, T. N. (1982). Inorg. Chim. Acta, 66, 29-36. [CrossRef] [ChemPort]
Fujimaki, H., Oonishi, I., Muto, F., Nakahara, A. & Komiyama, Y. (1971). Bull. Chem. Soc. Jpn, 44, 28-34.  [CrossRef] [ChemPort]
Garcia-Raso, A., Fiol, J. J., Badenas, F. & Quiros, M. (1996). Polyhedron, 15, 4407-4413. [CrossRef] [ChemPort]
Hamalainen, R., Turpeinen, U., Ahlgren, M. & Rantala, M. (1978). Acta Chem. Scand. Ser. A, 32, 549-553.  [CrossRef]
Hill, E. & Warda, S. A. (1999). Acta Cryst. C55, 1431-1434. [CrossRef] [details]
Ito, N., Phillips, S. E. V., Yadav, K. D. S. & Knowles, P. F. (1994). J. Mol. Biol. 238, 794-814. [CrossRef] [ChemPort] [PubMed]
Kettman, V., Fresova, E., Blahova, M. & Kratsmar-Smogrovic, J. (1993). Acta Cryst. C49, 1932-1934. [CrossRef] [details]
Korhonen, K. & Hamalainen, R. (1979). Acta Chem. Scand. Ser. A, 33, 569-575.  [CrossRef]
Korhonen, K., Hamalainen, R. & Turpeinen, U. (1984). Acta Cryst. C40, 1175-1177. [CrossRef] [details]
Kruse, T., Weyhermuller, T. & Wieghardt, K. (2002). Inorg. Chim. Acta, 331, 81-89. [CrossRef] [ChemPort]
Plesch, G., Friebel, C., Warda, S. A., Sivy, J. & Svajlenova, O. (1997). Transition Met. Chem. 22, 433-440.  [CrossRef] [ChemPort]
Plesch, G., Kettman, V., Sivy, J., Svajlenova, O. & Friebel, C. (1998). Polyhedron, 17, 539-545. [CrossRef] [ChemPort]
Sheldrick, G. M. (1997). SHELXTL. Version 5.10. Bruker AXS Inc., Madison Wisconsin, USA.
Shimazaki, Y., Huth, S., Hirota, S. & Yamauchi, O. (2002). Inorg. Chim. Acta, 331, 168-170. [CrossRef] [ChemPort]
Siemens (1994). XSCANS. Version 2.10. Siemens Analytical X-ray Instruments Inc. Madison, Wisconsin, USA. (Current suppliers: Bruker AXS Inc., Madison Wisconsin, USA.)
Sivy, J., Kettmann, V., Kratsmar-Smogrovic, J., Svajlenova, O. & Breza, M. (1994). Z. Naturforsch. Teil C, 49, 571-578.  [ChemPort]
Sivy, J., Kettmann, V., Kratsmar-Smogrovic, J., Svajlenova, O., Friebel, C. & Plesch, G. (1990). Z. Anorg. Allg. Chem. 583, 55-66.  [CrossRef] [ChemPort]
Thomas, F., Gellon, G., Gautier-Luneau, I., Saint-Aman, E. & Pierre, J.-L. (2002). Angew. Chem. Int. Ed. 41, 3047-3050. [CrossRef] [ChemPort]
Ueki, T., Ashida, T., Sasada, Y. & Kakudo, M. (1967). Acta Cryst. 22, 870-878. [CrossRef] [ChemPort] [details]
Ueki, T., Ashida, T., Sasada, Y. & Kakudo, M. (1969). Acta Cryst. B25, 328-335. [CrossRef] [ChemPort] [details]
Warda, S. A. (1997a). Acta Cryst. C53, 1186-1188. [CrossRef] [details]
Warda, S. A. (1997b). Acta Cryst. C53, 697-699. [CrossRef] [details]
Warda, S. A. (1997c). Acta Cryst. C53, 1010-1011. [CrossRef] [details]
Warda, S. A. (1997d). Acta Cryst. C53, 1184-1186. [CrossRef] [details]
Warda, S. A. (1997e). Acta Cryst. C53, 1588-1590. [CrossRef] [details]
Warda, S. A. (1997f). Acta Cryst. C53, 1590-1593. [CrossRef] [details]
Warda, S. A. (1997g). Acta Cryst. C53, 1759-1761. [CrossRef] [details]
Warda, S. A. (1998a). Acta Cryst. C54, 187-189. [CrossRef] [details]
Warda, S. A. (1998b). Acta Cryst. C54, 302-304. [CrossRef] [details]
Warda, S. A. (1998c). Acta Cryst. C54, 304-306. [CrossRef] [details]
Warda, S. A. (1998d). Acta Cryst. C54, 768-770. [CrossRef] [details]
Warda, S. A. (1998e). Acta Cryst. C54, 1236-1238. [CrossRef] [details]
Warda, S. A. (1998f). Acta Cryst. C54, 1754-1755. [CrossRef] [details]
Warda, S. A. (1998g). Z. Kristallogr. New Cryst. Struct. 213, 771-772.  [ChemPort]
Warda, S. A. (1999). Z. Kristallogr. New Cryst. Struct. 214, 77-78.  [ChemPort]
Warda, S. A., Dahlke, P., Wocadlo, S., Massa, W. & Friebel, C. (1998). Inorg. Chim. Acta 268, 117-124.  [CrossRef] [ChemPort]
Warda, S. A., Friebel, C., Sivy, J., Plesch, G. & Blahova, M. (1997). Acta Cryst. C53, 50-54. [CrossRef] [details]
Warda, S. A., Friebel, C., Sivy, J., Plesch, G. & Svajlenova, O. (1996). Acta Cryst. C52, 2763-2766. [CrossRef] [details]
Whittaker, J. W. (1994). Metal Ions in Biological Systems, Vol. 30, edited by H. Sigel and A. Sigel, pp. 315-360. New York: Marcel Dekker.
Whittaker, M. M. & Whittaker, J. W. (2001). Biochemistry, 40, 7140-7148. [CrossRef] [PubMed] [ChemPort]
Wuensch B. & Prewett, C. (1965). Z. Kristallogr. 122, 24-59.


Acta Cryst (2003). E59, m20-m22   [ doi:10.1107/S1600536802022043 ]