organic compounds
The structure of the major product from the treatment of benzaldehyde with glycerol, derivatized as its crystalline 4-bromobenzoate, is shown to be the title compound, C17H15BrO4, by a room-temperature single-crystal X-ray structure determination, providing a rare example of a structurally characterized 1,3-dioxane system.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680400666X/hg6028sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680400666X/hg6028Isup2.hkl |
CCDC reference: 238819
Key indicators
- Single-crystal X-ray study
- T = 300 K
- Mean (C-C) = 0.012 Å
- R factor = 0.054
- wR factor = 0.099
- Data-to-parameter ratio = 13.7
checkCIF/PLATON results
No syntax errors found
Alert level A DIFF012_ALERT_1_A _diffrn_reflns_av_R_equivalents is missing R factor for symmetry-equivalent intensities. The following tests will not be performed RINTA
Author Response: only a unique set of reflections were measured on the four-circle diffractometer. |
Alert level C PLAT026_ALERT_3_C Ratio Observed / Unique Reflections too Low .... 46 Perc. PLAT242_ALERT_2_C Check Low U(eq) as Compared to Neighbors .... C54 PLAT341_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 12 PLAT431_ALERT_2_C Short Inter HL..A Contact Br54 .. O50 .. 3.27 Ang.
1 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion
Computing details top
Data collection: Syntex Software (Syntex, 1974); cell refinement: Syntex Software; data reduction: Xtal3.5 (Hall et al., 1995); program(s) used to solve structure: Xtal3.5; program(s) used to refine structure: CRYLSQ in Xtal3.5; molecular graphics: Xtal3.5; software used to prepare material for publication: BONDLA and CIFIO in Xtal3.5.
(I) top
Crystal data top
C17H15BrO4 | Z = 2 |
Mr = 363.22 | F(000) = 368 |
Triclinic, P1 | Dx = 1.517 Mg m−3 |
Hall symbol: -p_1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.117 (4) Å | Cell parameters from 6 reflections |
b = 9.977 (7) Å | θ = 9.0–12.7° |
c = 10.737 (6) Å | µ = 2.6 mm−1 |
α = 113.47 (4)° | T = 300 K |
β = 90.49 (4)° | Plate, colourless |
γ = 93.98 (5)° | 0.4 × 0.21 × 0.09 mm |
V = 795.0 (9) Å3 |
Data collection top
Syntex P1 diffractometer | 1251 reflections with I > 2.00 σ(I) |
Radiation source: sealed tube | θmax = 25.0°, θmin = 2.1° |
Graphite monochromator | h = −9→0 |
2θ–ω scans | k = −10→10 |
Absorption correction: gaussian Xtal, absorb | l = −11→11 |
Tmin = 0.55, Tmax = 0.81 | 9 standard reflections every 60 min |
2718 measured reflections | intensity decay: none |
2718 independent reflections |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: absorb |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: absorb |
wR(F2) = 0.099 | H-atom parameters not refined |
S = 1.17 | w = 1/(σ2(F2) + 2.4F2) |
2718 reflections | (Δ/σ)max = 0.002 |
199 parameters | Δρmax = 1.27 e Å−3 |
0 restraints | Δρmin = −0.86 e Å−3 |
0 constraints |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.3823 (7) | 0.8050 (5) | 0.6911 (5) | 0.060 (3) | |
C2 | 0.3537 (8) | 0.8534 (7) | 0.8302 (7) | 0.048 (3) | |
O3 | 0.2062 (7) | 0.7854 (5) | 0.8517 (5) | 0.065 (3) | |
C4 | 0.2126 (11) | 0.6301 (8) | 0.7997 (9) | 0.071 (5) | |
C5 | 0.2436 (9) | 0.5723 (7) | 0.6491 (8) | 0.052 (4) | |
C6 | 0.3987 (11) | 0.6507 (8) | 0.6291 (8) | 0.063 (4) | |
C21 | 0.3413 (8) | 1.0155 (7) | 0.8855 (7) | 0.044 (3) | |
C22 | 0.4401 (11) | 1.1028 (8) | 0.8417 (8) | 0.065 (4) | |
C23 | 0.4299 (14) | 1.2539 (9) | 0.8948 (10) | 0.086 (6) | |
C24 | 0.3158 (13) | 1.3167 (9) | 0.9915 (10) | 0.079 (5) | |
C25 | 0.2219 (12) | 1.2317 (9) | 1.0387 (10) | 0.076 (5) | |
C26 | 0.2327 (9) | 1.0828 (8) | 0.9860 (8) | 0.060 (4) | |
O5 | 0.2572 (6) | 0.4163 (5) | 0.6015 (5) | 0.054 (3) | |
C50 | 0.1962 (9) | 0.3356 (7) | 0.4726 (7) | 0.048 (3) | |
O50 | 0.1510 (7) | 0.3875 (5) | 0.3978 (5) | 0.059 (3) | |
C51 | 0.1924 (9) | 0.1747 (7) | 0.4390 (7) | 0.048 (3) | |
C52 | 0.1059 (10) | 0.0805 (8) | 0.3226 (8) | 0.060 (4) | |
C53 | 0.0990 (11) | −0.0683 (8) | 0.2849 (8) | 0.067 (5) | |
C54 | 0.1786 (10) | −0.1224 (7) | 0.3665 (8) | 0.056 (4) | |
Br54 | 0.17153 (14) | −0.32652 (9) | 0.31957 (12) | 0.0832 (6) | |
C55 | 0.2660 (11) | −0.0307 (8) | 0.4835 (8) | 0.066 (5) | |
C56 | 0.2712 (10) | 0.1178 (8) | 0.5192 (8) | 0.060 (4) | |
H2 | 0.44565 | 0.82539 | 0.87340 | 0.05800* | |
H4a | 0.11249 | 0.58471 | 0.81355 | 0.07800* | |
H4b | 0.30185 | 0.60645 | 0.84433 | 0.07800* | |
H5 | 0.15521 | 0.59026 | 0.60001 | 0.05900* | |
H6a | 0.48936 | 0.62740 | 0.67107 | 0.07000* | |
H6b | 0.41477 | 0.62125 | 0.53521 | 0.07000* | |
H22 | 0.52007 | 1.05967 | 0.77465 | 0.07300* | |
H23 | 0.49598 | 1.31187 | 0.85987 | 0.10200* | |
H24 | 0.30848 | 1.41913 | 1.02593 | 0.09300* | |
H25 | 0.15069 | 1.27582 | 1.10987 | 0.08800* | |
H26 | 0.16199 | 1.02319 | 1.01599 | 0.07200* | |
H52 | 0.05122 | 0.12197 | 0.26925 | 0.07000* | |
H53 | 0.04107 | −0.13262 | 0.20424 | 0.07700* | |
H55 | 0.31790 | −0.06923 | 0.53893 | 0.07800* | |
H56 | 0.33053 | 0.18201 | 0.59978 | 0.07100* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.085 (4) | 0.038 (3) | 0.048 (3) | 0.006 (2) | 0.010 (3) | 0.009 (2) |
C2 | 0.045 (4) | 0.046 (4) | 0.045 (4) | −0.001 (3) | −0.000 (3) | 0.012 (3) |
O3 | 0.065 (4) | 0.046 (3) | 0.069 (4) | −0.004 (2) | 0.016 (3) | 0.009 (2) |
C4 | 0.081 (6) | 0.036 (4) | 0.083 (6) | −0.006 (4) | 0.013 (5) | 0.010 (4) |
C5 | 0.052 (5) | 0.032 (3) | 0.059 (5) | 0.006 (3) | −0.004 (4) | 0.005 (3) |
C6 | 0.076 (6) | 0.048 (4) | 0.063 (5) | 0.017 (4) | 0.012 (4) | 0.016 (4) |
C21 | 0.042 (4) | 0.036 (3) | 0.043 (4) | −0.002 (3) | −0.004 (3) | 0.005 (3) |
C22 | 0.080 (6) | 0.047 (4) | 0.051 (5) | −0.010 (4) | 0.002 (4) | 0.006 (4) |
C23 | 0.121 (9) | 0.051 (5) | 0.079 (7) | −0.021 (5) | −0.002 (6) | 0.024 (5) |
C24 | 0.099 (8) | 0.047 (5) | 0.080 (7) | 0.009 (5) | −0.012 (6) | 0.014 (4) |
C25 | 0.080 (7) | 0.058 (5) | 0.079 (6) | 0.011 (4) | 0.013 (5) | 0.014 (5) |
C26 | 0.043 (4) | 0.059 (5) | 0.067 (5) | 0.001 (3) | 0.007 (4) | 0.013 (4) |
O5 | 0.064 (3) | 0.033 (2) | 0.059 (3) | 0.006 (2) | −0.009 (3) | 0.011 (2) |
C50 | 0.045 (4) | 0.047 (4) | 0.043 (4) | 0.004 (3) | −0.001 (3) | 0.009 (3) |
O50 | 0.078 (4) | 0.040 (3) | 0.061 (4) | 0.004 (2) | −0.008 (3) | 0.021 (2) |
C51 | 0.051 (4) | 0.034 (3) | 0.056 (5) | 0.003 (3) | 0.004 (4) | 0.015 (3) |
C52 | 0.077 (6) | 0.041 (4) | 0.057 (5) | −0.001 (4) | −0.012 (4) | 0.015 (3) |
C53 | 0.087 (6) | 0.041 (4) | 0.063 (6) | 0.002 (4) | −0.009 (5) | 0.010 (4) |
C54 | 0.061 (5) | 0.039 (4) | 0.068 (5) | 0.003 (3) | 0.009 (4) | 0.021 (4) |
Br54 | 0.1022 (8) | 0.0383 (4) | 0.1043 (8) | −0.0005 (4) | 0.0082 (6) | 0.0243 (4) |
C55 | 0.091 (7) | 0.053 (5) | 0.060 (5) | 0.011 (4) | 0.001 (5) | 0.028 (4) |
C56 | 0.072 (6) | 0.049 (4) | 0.057 (5) | −0.005 (4) | −0.022 (4) | 0.020 (4) |
Geometric parameters (Å, º) top
O1—C2 | 1.402 (9) | C24—C25 | 1.347 (15) |
O1—C6 | 1.430 (9) | C24—H24 | 0.944 |
C2—O3 | 1.401 (9) | C25—C26 | 1.372 (12) |
C2—C21 | 1.495 (9) | C25—H25 | 0.942 |
C2—H2 | 0.989 | C26—H26 | 0.947 |
O3—C4 | 1.427 (9) | O5—C50 | 1.361 (8) |
C4—C5 | 1.515 (12) | C50—O50 | 1.184 (11) |
C4—H4a | 0.944 | C50—C51 | 1.496 (10) |
C4—H4b | 0.958 | C51—C52 | 1.377 (9) |
C5—C6 | 1.498 (11) | C51—C56 | 1.379 (13) |
C5—O5 | 1.445 (8) | C52—C53 | 1.372 (11) |
C5—H5 | 0.954 | C52—H52 | 0.952 |
C6—H6a | 0.949 | C53—C54 | 1.376 (14) |
C6—H6b | 0.944 | C53—H53 | 0.944 |
C21—C22 | 1.363 (12) | C54—Br54 | 1.890 (7) |
C21—C26 | 1.383 (10) | C54—C55 | 1.377 (10) |
C22—C23 | 1.393 (11) | C55—C56 | 1.372 (11) |
C22—H22 | 0.962 | C55—H55 | 0.938 |
C23—C24 | 1.381 (14) | C56—H56 | 0.948 |
C23—H23 | 0.947 | ||
C2—O1—C6 | 112.2 (6) | C22—C23—H23 | 119.6 |
O1—C2—O3 | 110.9 (5) | C24—C23—H23 | 120.5 |
O1—C2—C21 | 108.0 (7) | C23—C24—C25 | 119.4 (8) |
O1—C2—H2 | 107.8 | C23—C24—H24 | 119.1 |
O3—C2—C21 | 109.3 (5) | C25—C24—H24 | 121.4 |
O3—C2—H2 | 108.1 | C24—C25—C26 | 120.4 (8) |
C21—C2—H2 | 112.9 | C24—C25—H25 | 119.2 |
C2—O3—C4 | 111.1 (6) | C26—C25—H25 | 120.3 |
O3—C4—C5 | 109.3 (8) | C21—C26—C25 | 121.7 (8) |
O3—C4—H4a | 110.8 | C21—C26—H26 | 118.3 |
O3—C4—H4b | 109.7 | C25—C26—H26 | 119.9 |
C5—C4—H4a | 109.5 | C5—O5—C50 | 115.1 (6) |
C5—C4—H4b | 108.3 | O5—C50—O50 | 123.7 (6) |
H4a—C4—H4b | 109.3 | O5—C50—C51 | 111.6 (7) |
C4—C5—C6 | 108.6 (6) | O50—C50—C51 | 124.7 (6) |
C4—C5—O5 | 107.7 (7) | C50—C51—C52 | 117.9 (7) |
C4—C5—H5 | 111.2 | C50—C51—C56 | 122.9 (6) |
C6—C5—O5 | 111.9 (6) | C52—C51—C56 | 119.2 (7) |
C6—C5—H5 | 108.1 | C51—C52—C53 | 120.9 (8) |
O5—C5—H5 | 109.5 | C51—C52—H52 | 117.9 |
O1—C6—C5 | 108.6 (6) | C53—C52—H52 | 121.2 |
O1—C6—H6a | 109.6 | C52—C53—C54 | 118.8 (7) |
O1—C6—H6b | 110.1 | C52—C53—H53 | 120.7 |
C5—C6—H6a | 109.1 | C54—C53—H53 | 120.5 |
C5—C6—H6b | 109.4 | C53—C54—Br54 | 120.4 (5) |
H6a—C6—H6b | 110.1 | C53—C54—C55 | 121.5 (7) |
C2—C21—C22 | 121.2 (6) | Br54—C54—C55 | 118.1 (7) |
C2—C21—C26 | 121.2 (7) | C54—C55—C56 | 118.7 (9) |
C22—C21—C26 | 117.6 (6) | C54—C55—H55 | 120.4 |
C21—C22—C23 | 121.1 (8) | C56—C55—H55 | 120.8 |
C21—C22—H22 | 119.5 | C51—C56—C55 | 120.9 (7) |
C23—C22—H22 | 119.4 | C51—C56—H56 | 119.7 |
C22—C23—C24 | 119.7 (10) | C55—C56—H56 | 119.4 |