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In the title compound, [Pd(C2O4)(C12H8N2)]·H2O, the PdII atom is coordinated by two N atoms of 1,10-phenanthroline and two O atoms of an oxalate ligand, with cis-square-planar geometry. The oxalate C—C bonds are elongated compared with oxalic acid. The asymmetric unit contains two complex mol­ecules and two mol­ecules of water.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536804027357/cf6375sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536804027357/cf6375Isup2.hkl
Contains datablock I

CCDC reference: 258664

Key indicators

  • Single-crystal X-ray study
  • T = 296 K
  • Mean [sigma](C-C) = 0.005 Å
  • R factor = 0.025
  • wR factor = 0.073
  • Data-to-parameter ratio = 14.4

checkCIF/PLATON results

No syntax errors found



Alert level B PLAT230_ALERT_2_B Hirshfeld Test Diff for C6 - C7 .. 10.30 su PLAT369_ALERT_2_B Long C(sp2)-C(sp2) Bond C13 - C14 ... 1.57 Ang. PLAT369_ALERT_2_B Long C(sp2)-C(sp2) Bond C27 - C28 ... 1.57 Ang.
Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.97 PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.43 PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ? PLAT230_ALERT_2_C Hirshfeld Test Diff for C7 - C9 .. 6.72 su PLAT335_ALERT_2_C Large Benzene C-C Range C4 -C6 0.16 Ang.
0 ALERT level A = In general: serious problem 3 ALERT level B = Potentially serious problem 6 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 6 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: PROCESS-AUTO (Rigaku/MSC, 2004); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: CrystalStructure.

(Oxalato-κ2O,O')(1,10-phenanthroline-κ2N,N')palladium(II) monohydrate top
Crystal data top
[Pd(C2O4)(C12H8N2)]·H2OZ = 4
Mr = 392.66F(000) = 776.00
Triclinic, P_1Dx = 1.958 Mg m3
Hall symbol: -p_1Mo Kα radiation, λ = 0.7107 Å
a = 7.028 (7) ÅCell parameters from 11758 reflections
b = 11.527 (15) Åθ = 3.0–27.5°
c = 17.85 (2) ŵ = 1.42 mm1
α = 72.36 (4)°T = 296 K
β = 88.96 (3)°Needle, brown
γ = 75.55 (4)°0.50 × 0.10 × 0.10 mm
V = 1332 (2) Å3
Data collection top
Rigaku RAXIS-RAPID
diffractometer
5030 reflections with I > 2σ(I)
Detector resolution: 10.00 pixels mm-1Rint = 0.013
ω scansθmax = 27.5°
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)
h = 98
Tmin = 0.601, Tmax = 0.867k = 1414
12903 measured reflectionsl = 2223
5903 independent reflections
Refinement top
Refinement on F2H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.025 w = 1/[σ2(Fo2) + (0.041P)2 + 0.4089P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.073(Δ/σ)max = 0.002
S = 1.13Δρmax = 0.85 e Å3
5903 reflectionsΔρmin = 0.35 e Å3
410 parameters
Special details top

Refinement. Refinement using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Pd10.29052 (3)0.96695 (2)0.01017 (1)0.02967 (7)
Pd20.25067 (3)0.44628 (2)0.50412 (1)0.03532 (7)
O10.2032 (3)1.0427 (2)0.0966 (1)0.0404 (4)
O20.0069 (3)1.2173 (2)0.1115 (1)0.0526 (5)
O30.1221 (3)1.1281 (2)0.0591 (1)0.0365 (4)
O40.0838 (3)1.3025 (2)0.0506 (1)0.0505 (5)
O50.2725 (3)0.2751 (2)0.4946 (1)0.0470 (5)
O60.3461 (4)0.0759 (2)0.5692 (1)0.0625 (6)
O70.3096 (3)0.3535 (2)0.6180 (1)0.0468 (5)
O80.3753 (4)0.1583 (2)0.6992 (1)0.0671 (7)
O90.3474 (4)0.1587 (3)0.3694 (1)0.0675 (7)
O100.0169 (4)0.2807 (3)0.2552 (1)0.0807 (9)
N10.3719 (3)0.8897 (2)0.0760 (1)0.0327 (4)
N20.4607 (3)0.8015 (2)0.0768 (1)0.0328 (4)
N30.2298 (3)0.6172 (2)0.5135 (1)0.0377 (5)
N40.1944 (3)0.5453 (2)0.3896 (1)0.0402 (5)
C10.3293 (4)0.9416 (3)0.1529 (1)0.0410 (6)
C20.3948 (5)0.8740 (3)0.2053 (2)0.0506 (7)
C30.5074 (5)0.7531 (3)0.1789 (2)0.0491 (7)
C40.5606 (4)0.6963 (3)0.0973 (2)0.0396 (6)
C50.4866 (3)0.7690 (2)0.0482 (1)0.0323 (5)
C60.6841 (4)0.5728 (3)0.0619 (2)0.0478 (7)
C70.7349 (4)0.5209 (3)0.0158 (2)0.0411 (6)
C80.5352 (3)0.7217 (2)0.0340 (1)0.0322 (5)
C90.6573 (4)0.6008 (2)0.0679 (2)0.0383 (6)
C100.7015 (4)0.5633 (3)0.1499 (2)0.0481 (7)
C110.6299 (5)0.6445 (3)0.1908 (2)0.0499 (7)
C120.5090 (4)0.7647 (3)0.1534 (2)0.0410 (6)
C130.0820 (4)1.1523 (3)0.0709 (1)0.0358 (5)
C140.0315 (4)1.2020 (2)0.0203 (1)0.0343 (5)
C150.2447 (5)0.6491 (3)0.5791 (2)0.0473 (7)
C160.2314 (5)0.7733 (3)0.5753 (2)0.0567 (8)
C170.1997 (5)0.8653 (3)0.5047 (2)0.0550 (8)
C180.1769 (4)0.8363 (3)0.4349 (2)0.0459 (6)
C190.1945 (4)0.7092 (3)0.4431 (1)0.0369 (5)
C200.1380 (5)0.9246 (3)0.3571 (2)0.0587 (8)
C210.1172 (5)0.8873 (3)0.2930 (2)0.0589 (8)
C220.1752 (4)0.6700 (3)0.3754 (1)0.0383 (6)
C230.1337 (4)0.7586 (3)0.3006 (2)0.0482 (7)
C240.1109 (4)0.7119 (4)0.2374 (2)0.0569 (9)
C250.1301 (5)0.5864 (4)0.2524 (2)0.0576 (8)
C260.1733 (4)0.5037 (3)0.3283 (2)0.0501 (7)
C270.3190 (4)0.1860 (3)0.5618 (2)0.0424 (6)
C280.3377 (4)0.2329 (3)0.6344 (2)0.0430 (6)
H10.25461.02460.17220.049*
H20.36130.91180.25890.061*
H30.54900.70820.21410.059*
H40.73310.52460.09480.057*
H50.81440.43950.03620.049*
H60.77970.48320.17570.058*
H70.66140.62010.24470.060*
H80.46210.81930.18260.049*
H90.26430.58710.62790.057*
H100.24440.79330.62140.068*
H110.19300.94790.50260.066*
H120.12671.00940.35030.070*
H130.09190.94690.24330.071*
H140.08300.76650.18630.068*
H150.11410.55560.21100.069*
H160.18790.41820.33690.060*
H170.33340.18620.41330.101*
H180.43230.08010.38270.101*
H190.12860.22980.28600.121*
H200.00510.25140.21350.121*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Pd10.0308 (1)0.0255 (1)0.0312 (1)0.00342 (7)0.00136 (7)0.00950 (7)
Pd20.0402 (1)0.0336 (1)0.0305 (1)0.00583 (8)0.00114 (8)0.01032 (8)
O10.045 (1)0.039 (1)0.0351 (9)0.0027 (8)0.0002 (8)0.0150 (8)
O20.055 (1)0.056 (1)0.051 (1)0.003 (1)0.005 (1)0.033 (1)
O30.0421 (9)0.0285 (9)0.0326 (9)0.0015 (7)0.0009 (7)0.0090 (7)
O40.055 (1)0.035 (1)0.054 (1)0.0048 (9)0.000 (1)0.0161 (9)
O50.062 (1)0.041 (1)0.039 (1)0.0081 (9)0.0006 (9)0.0178 (9)
O60.074 (2)0.038 (1)0.074 (2)0.005 (1)0.005 (1)0.022 (1)
O70.066 (1)0.037 (1)0.0332 (9)0.0079 (9)0.0011 (9)0.0096 (8)
O80.097 (2)0.048 (1)0.044 (1)0.012 (1)0.009 (1)0.001 (1)
O90.082 (2)0.064 (2)0.053 (1)0.001 (1)0.014 (1)0.026 (1)
O100.092 (2)0.080 (2)0.055 (2)0.017 (2)0.013 (1)0.031 (1)
N10.033 (1)0.029 (1)0.035 (1)0.0060 (8)0.0030 (9)0.0112 (9)
N20.031 (1)0.029 (1)0.037 (1)0.0044 (8)0.0007 (8)0.0091 (9)
N30.039 (1)0.038 (1)0.035 (1)0.0097 (9)0.0026 (9)0.0110 (9)
N40.040 (1)0.047 (1)0.033 (1)0.008 (1)0.0013 (9)0.013 (1)
C10.046 (1)0.036 (1)0.036 (1)0.005 (1)0.002 (1)0.008 (1)
C20.063 (2)0.050 (2)0.037 (1)0.007 (1)0.006 (1)0.015 (1)
C30.059 (2)0.047 (2)0.046 (2)0.011 (1)0.015 (1)0.025 (1)
C40.037 (1)0.036 (1)0.049 (1)0.009 (1)0.010 (1)0.019 (1)
C50.032 (1)0.028 (1)0.037 (1)0.0080 (9)0.004 (1)0.010 (1)
C60.047 (2)0.036 (2)0.064 (2)0.007 (1)0.014 (1)0.025 (1)
C70.027 (1)0.045 (2)0.045 (1)0.010 (1)0.001 (1)0.004 (1)
C80.029 (1)0.028 (1)0.038 (1)0.0062 (9)0.002 (1)0.008 (1)
C90.031 (1)0.029 (1)0.051 (2)0.004 (1)0.001 (1)0.009 (1)
C100.044 (1)0.035 (2)0.051 (2)0.002 (1)0.008 (1)0.000 (1)
C110.053 (2)0.046 (2)0.040 (1)0.006 (1)0.010 (1)0.004 (1)
C120.042 (1)0.040 (2)0.040 (1)0.008 (1)0.000 (1)0.013 (1)
C130.034 (1)0.036 (1)0.042 (1)0.011 (1)0.008 (1)0.018 (1)
C140.033 (1)0.027 (1)0.043 (1)0.007 (1)0.003 (1)0.012 (1)
C150.056 (2)0.049 (2)0.039 (1)0.014 (1)0.003 (1)0.017 (1)
C160.060 (2)0.061 (2)0.062 (2)0.018 (2)0.002 (2)0.035 (2)
C170.054 (2)0.043 (2)0.074 (2)0.015 (1)0.006 (2)0.024 (2)
C180.037 (1)0.039 (2)0.059 (2)0.011 (1)0.003 (1)0.011 (1)
C190.031 (1)0.039 (1)0.038 (1)0.008 (1)0.002 (1)0.009 (1)
C200.054 (2)0.039 (2)0.072 (2)0.014 (1)0.002 (2)0.001 (2)
C210.052 (2)0.054 (2)0.055 (2)0.014 (2)0.001 (1)0.008 (2)
C220.032 (1)0.045 (2)0.034 (1)0.009 (1)0.003 (1)0.006 (1)
C230.036 (1)0.058 (2)0.038 (1)0.009 (1)0.001 (1)0.001 (1)
C240.045 (2)0.081 (3)0.031 (1)0.010 (2)0.001 (1)0.004 (1)
C250.054 (2)0.083 (3)0.037 (1)0.013 (2)0.000 (1)0.022 (2)
C260.054 (2)0.060 (2)0.040 (1)0.013 (1)0.001 (1)0.022 (1)
C270.040 (1)0.038 (2)0.047 (1)0.006 (1)0.003 (1)0.014 (1)
C280.043 (1)0.042 (2)0.039 (1)0.005 (1)0.002 (1)0.010 (1)
Geometric parameters (Å, º) top
Pd1—O12.009 (2)C4—C61.428 (3)
Pd1—O31.986 (3)C5—C81.416 (3)
Pd1—N12.007 (2)C6—C71.348 (4)
Pd1—N22.006 (2)C6—H40.93
Pd2—O51.999 (2)C7—C91.503 (4)
Pd2—O71.985 (2)C7—H50.93
Pd2—N31.997 (3)C8—C91.398 (3)
Pd2—N42.007 (2)C9—C101.412 (4)
O1—C131.287 (3)C10—C111.351 (5)
O2—C131.217 (4)C10—H60.93
O3—C141.295 (3)C11—C121.400 (4)
O4—C141.208 (3)C11—H70.93
O5—C271.304 (3)C12—H80.93
O6—C271.200 (4)C13—C141.569 (4)
O7—C281.295 (4)C15—C161.393 (5)
O8—C281.201 (3)C15—H90.93
O9—H170.92C16—C171.358 (4)
O9—H180.91C16—H100.93
O10—H190.92C17—C181.406 (5)
O10—H200.92C17—H110.93
N1—C11.327 (3)C18—C191.401 (5)
N1—C51.367 (3)C18—C201.434 (4)
N2—C81.369 (4)C19—C221.431 (4)
N2—C121.326 (3)C20—C211.360 (6)
N3—C151.342 (4)C20—H120.93
N3—C191.355 (3)C21—C231.423 (5)
N4—C221.354 (4)C21—H130.93
N4—C261.345 (5)C22—C231.396 (3)
C1—C21.393 (5)C23—C241.416 (5)
C1—H10.93C24—C251.361 (6)
C2—C31.362 (4)C24—H140.93
C2—H20.93C25—C261.387 (4)
C3—C41.417 (4)C25—H150.93
C3—H30.93C26—H160.93
C4—C51.397 (4)C27—C281.566 (5)
O1—Pd1—O383.93 (7)C10—C9—C7124.5 (2)
O1—Pd1—N1178.60 (9)C11—C10—C9119.7 (2)
O1—Pd1—N298.12 (8)C11—C10—H6120.2
O3—Pd1—N195.97 (7)H6—C10—C9120.2
O3—Pd1—N2177.87 (9)C12—C11—C10121.1 (3)
N1—Pd1—N281.96 (8)C12—C11—H7119.7
O5—Pd2—O783.80 (9)H7—C11—C10119.5
O5—Pd2—N3179.80 (9)H8—C12—N2119.7
O5—Pd2—N498.2 (1)H8—C12—C11119.7
O7—Pd2—N396.23 (9)C14—C13—O1115.3 (2)
O7—Pd2—N4177.9 (1)C14—C13—O2119.4 (2)
N3—Pd2—N481.8 (1)O1—C13—O2125.3 (2)
C13—O1—Pd1112.5 (2)C13—C14—O3115.2 (2)
C14—O3—Pd1112.9 (1)C13—C14—O4121.0 (3)
C27—O5—Pd2112.9 (2)O3—C14—O4123.8 (2)
C28—O7—Pd2113.4 (2)C16—C15—N3121.1 (3)
H17—O9—H18108.9C16—C15—H9119.5
H19—O10—H20108.3H9—C15—N3119.5
C1—N1—Pd1128.1 (2)C17—C16—C15120.3 (4)
C1—N1—C5119.2 (2)C17—C16—H10119.9
C5—N1—Pd1112.7 (2)H10—C16—C15119.9
C8—N2—Pd1112.5 (1)C18—C17—C16120.3 (3)
C8—N2—C12119.2 (2)C18—C17—H11119.8
C12—N2—Pd1128.3 (2)H11—C17—C16119.8
C15—N3—Pd2128.2 (2)C19—C18—C17116.2 (2)
C15—N3—C19118.7 (3)C19—C18—C20117.9 (3)
C19—N3—Pd2113.1 (2)C20—C18—C17125.9 (3)
C22—N4—Pd2112.9 (2)C22—C19—N3116.2 (3)
C22—N4—C26118.4 (2)C22—C19—C18120.4 (2)
C26—N4—Pd2128.7 (2)C21—C20—C18121.5 (3)
C2—C1—N1121.1 (2)C21—C20—H12119.2
C2—C1—H1119.4573H12—C20—C18119.2
H1—C1—N1119.5C23—C21—H13119.5
C3—C2—C1120.7 (3)C23—C21—C20121.1 (3)
C3—C2—H2119.6H13—C21—C20119.4
H2—C2—C1119.6C23—C22—N4123.8 (3)
C4—C3—C2119.5 (3)C23—C22—C19120.3 (3)
C4—C3—H3120.2C24—C23—C22116.4 (3)
H3—C3—C2120.2C24—C23—C21124.9 (3)
C5—C4—C3116.5 (2)C25—C24—H14120.3
C5—C4—C6117.9 (2)C25—C24—C23119.3 (3)
C6—C4—C3125.6 (3)H14—C24—C23120.3
C8—C5—N1116.3 (2)C26—C25—H15119.5
C8—C5—C4120.8 (2)C26—C25—C24121.1 (4)
C7—C6—C4124.6 (3)H15—C25—C24119.5
C7—C6—H4117.7H16—C26—N4119.5
H4—C6—C4117.7H16—C26—C25119.5
C9—C7—C6117.0 (2)C28—C27—O5114.7 (3)
C9—C7—H5121.5C28—C27—O6121.3 (2)
H5—C7—C6121.5O5—C27—O6124.0 (3)
C9—C8—N2122.7 (2)C27—C28—O7115.1 (2)
C9—C8—C5120.7 (3)C27—C28—O8119.9 (3)
C10—C9—C8116.6 (3)O7—C28—O8125.0 (3)
O3—Pd1—O1—C131.6 (2)C6—C7—C9—C81.3 (4)
O1—Pd1—O3—C142.6 (2)N2—C8—C9—C7178.9 (3)
O1—Pd1—N2—C8176.0 (2)C5—C8—C9—C70.6 (4)
O7—Pd2—O5—C272.2 (2)C7—C9—C10—C11177.4 (3)
O5—Pd2—O7—C281.2 (2)C9—C10—C11—C121.2 (5)
O5—Pd2—N4—C22178.6 (2)C10—C11—C12—N20.5 (5)
Pd1—O1—C13—O2179.5 (3)O1—C13—C14—O31.8 (4)
Pd1—O3—C14—O4177.2 (2)O1—C13—C14—O4178.4 (3)
Pd1—O3—C14—C133.0 (3)O2—C13—C14—O3178.3 (3)
Pd2—O5—C27—O6177.4 (3)O2—C13—C14—O41.5 (4)
Pd2—O7—C28—O8180.0 (2)N3—C15—C16—C171.1 (5)
Pd2—O7—C28—C270.1 (3)C15—C16—C17—C181.0 (5)
Pd1—N1—C1—C2178.8 (3)C16—C17—C18—C191.7 (4)
Pd1—N1—C5—C4180.0 (2)C17—C18—C19—N30.5 (4)
Pd1—N2—C8—C51.9 (3)C17—C18—C20—C21179.6 (3)
Pd1—N2—C12—C11179.7 (2)N3—C19—C22—N40.0 (3)
Pd2—N3—C15—C16178.4 (2)C18—C19—C22—N4180.0 (2)
Pd2—N3—C19—C18179.1 (2)C18—C20—C21—C230.1 (4)
Pd2—N4—C22—C191.0 (3)C20—C21—C23—C221.1 (5)
Pd2—N4—C26—C25178.6 (2)N4—C22—C23—C21179.9 (3)
N1—C1—C2—C31.1 (5)C19—C22—C23—C211.9 (4)
C1—C2—C3—C40.9 (5)C21—C23—C24—C25180.0 (3)
C2—C3—C4—C52.0 (5)C23—C24—C25—C260.5 (5)
C3—C4—C5—N11.3 (4)C24—C25—C26—N41.0 (5)
C3—C4—C6—C7179.2 (3)O5—C27—C28—O71.7 (4)
N1—C5—C8—N20.6 (4)O5—C27—C28—O8178.2 (3)
C4—C5—C8—N2177.9 (2)O6—C27—C28—O7178.3 (3)
C4—C6—C7—C91.0 (5)O6—C27—C28—O81.8 (5)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O9—H17···O50.922.002.915 (4)169
O9—H18···O6i0.912.032.921 (3)165
O10—H19···O90.921.992.887 (3)163
O10—H20···O2ii0.921.972.879 (4)168
Symmetry codes: (i) x+1, y, z+1; (ii) x, y1, z.
 

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