organic compounds
2-Hydroxy-1-naphthaldehyde condenses with β-phenylalanine to form the Schiff base N-(2-hydroxy-1-naphthalidene)-β-phenylalanine, which in the solid state exists in the zwitterionic form as (2-carboxy-1-phenylethyl)iminiomethylene-1-naphth-2-olate, C20H17NO3. The zwitterions are linked by a hydrogen bond from the carboxylic acid group to the negatively charged naphtholate O atom of an adjacent molecule.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536804033616/bt6572sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536804033616/bt6572Isup2.hkl |
CCDC reference: 262494
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.003 Å
- R factor = 0.048
- wR factor = 0.127
- Data-to-parameter ratio = 16.2
checkCIF/PLATON results
No syntax errors found
Alert level B ABSTM02_ALERT_3_B The ratio of expected to reported Tmax/Tmin(RR') is < 0.75 Tmin and Tmax reported: 0.641 0.986 Tmin' and Tmax expected: 0.969 0.986 RR' = 0.662 Please check that your absorption correction is appropriate. PLAT061_ALERT_3_B Tmax/Tmin Range Test RR' too Large ............. 0.66
Alert level C PLAT150_ALERT_1_C Volume as Calculated Differs from that Given ... 3202.00 Ang-3 PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
0 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion
Computing details top
Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
(2-carboxy-1-phenylethyl)iminiomethylene-1-naphth-2-olate top
Crystal data top
C20H17NO3 | F(000) = 1344 |
Mr = 319.35 | Dx = 1.325 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 12138 reflections |
a = 25.152 (5) Å | θ = 3.1–27.5° |
b = 9.760 (2) Å | µ = 0.09 mm−1 |
c = 15.557 (3) Å | T = 295 K |
β = 123.01 (3)° | Prism, yellow |
V = 3202 (1) Å3 | 0.35 × 0.23 × 0.16 mm |
Z = 8 |
Data collection top
Rigaku R-AXIS RAPID diffractometer | 3644 independent reflections |
Radiation source: fine-focus sealed tube | 2488 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
ω scans | θmax = 27.5°, θmin = 3.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −32→31 |
Tmin = 0.641, Tmax = 0.986 | k = −12→12 |
14977 measured reflections | l = −19→20 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0623P)2 + 0.5726P] where P = (Fo2 + 2Fc2)/3 |
3644 reflections | (Δ/σ)max = 0.001 |
225 parameters | Δρmax = 0.23 e Å−3 |
2 restraints | Δρmin = −0.17 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | 0.1470 (1) | 0.6278 (1) | 0.6212 (1) | 0.0409 (3) | |
O2 | 0.1917 (1) | 0.2962 (2) | 0.3682 (1) | 0.0568 (4) | |
O3 | 0.0975 (1) | 0.3162 (1) | 0.2228 (1) | 0.0512 (3) | |
N1 | 0.1562 (1) | 0.4170 (1) | 0.5269 (1) | 0.0352 (3) | |
C1 | 0.1999 (1) | 0.6722 (2) | 0.6369 (1) | 0.0347 (3) | |
C2 | 0.2285 (1) | 0.7944 (2) | 0.6952 (1) | 0.0420 (4) | |
C3 | 0.2827 (1) | 0.8448 (2) | 0.7094 (1) | 0.0430 (4) | |
C4 | 0.3153 (1) | 0.7794 (2) | 0.6689 (1) | 0.0377 (4) | |
C5 | 0.3721 (1) | 0.8333 (2) | 0.6856 (1) | 0.0464 (4) | |
C6 | 0.4027 (1) | 0.7715 (2) | 0.6458 (1) | 0.0500 (4) | |
C7 | 0.3772 (1) | 0.6530 (2) | 0.5876 (1) | 0.0484 (4) | |
C8 | 0.3224 (1) | 0.5971 (2) | 0.5712 (1) | 0.0415 (4) | |
C9 | 0.2901 (1) | 0.6567 (2) | 0.6126 (1) | 0.0339 (3) | |
C10 | 0.2323 (1) | 0.6007 (2) | 0.5983 (1) | 0.0327 (3) | |
C11 | 0.2099 (1) | 0.4727 (2) | 0.5507 (1) | 0.0340 (3) | |
C12 | 0.1367 (1) | 0.2762 (2) | 0.4876 (1) | 0.0359 (4) | |
C13 | 0.0975 (1) | 0.2734 (2) | 0.3706 (1) | 0.0463 (4) | |
C14 | 0.1349 (1) | 0.2969 (2) | 0.3219 (1) | 0.0396 (4) | |
C15 | 0.1008 (1) | 0.2154 (2) | 0.5312 (1) | 0.0364 (4) | |
C16 | 0.0429 (1) | 0.2691 (2) | 0.5055 (1) | 0.0489 (4) | |
C17 | 0.0102 (1) | 0.2133 (2) | 0.5450 (1) | 0.0563 (5) | |
C18 | 0.0353 (1) | 0.1033 (2) | 0.6108 (1) | 0.0556 (5) | |
C19 | 0.0923 (1) | 0.0492 (2) | 0.6368 (1) | 0.0534 (5) | |
C20 | 0.1253 (1) | 0.1049 (2) | 0.5975 (1) | 0.0441 (4) | |
H3o | 0.119 (1) | 0.331 (2) | 0.195 (1) | 0.066 (6)* | |
H1n | 0.135 (1) | 0.469 (2) | 0.541 (1) | 0.055 (6)* | |
H2 | 0.2092 | 0.8401 | 0.7237 | 0.050* | |
H3 | 0.2995 | 0.9250 | 0.7471 | 0.052* | |
H5 | 0.3890 | 0.9126 | 0.7244 | 0.056* | |
H6 | 0.4402 | 0.8082 | 0.6575 | 0.060* | |
H7 | 0.3976 | 0.6113 | 0.5594 | 0.058* | |
H8 | 0.3062 | 0.5180 | 0.5319 | 0.050* | |
H11 | 0.2351 | 0.4237 | 0.5348 | 0.041* | |
H12 | 0.1751 | 0.2214 | 0.5121 | 0.043* | |
H13a | 0.0764 | 0.1853 | 0.3480 | 0.056* | |
H13b | 0.0648 | 0.3431 | 0.3458 | 0.056* | |
H16 | 0.0260 | 0.3436 | 0.4612 | 0.059* | |
H17 | −0.0287 | 0.2498 | 0.5273 | 0.068* | |
H18 | 0.0133 | 0.0657 | 0.6376 | 0.067* | |
H19 | 0.1089 | −0.0253 | 0.6810 | 0.064* | |
H20 | 0.1642 | 0.0678 | 0.6157 | 0.053* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0436 (6) | 0.0482 (7) | 0.0432 (6) | 0.0023 (5) | 0.0317 (5) | −0.0015 (5) |
O2 | 0.0461 (7) | 0.0893 (10) | 0.0439 (7) | 0.0054 (6) | 0.0303 (6) | 0.0001 (6) |
O3 | 0.0499 (7) | 0.0761 (9) | 0.0377 (7) | −0.0112 (6) | 0.0303 (6) | −0.0028 (5) |
N1 | 0.0390 (7) | 0.0381 (8) | 0.0378 (7) | −0.0004 (6) | 0.0269 (6) | −0.0015 (5) |
C1 | 0.040 (1) | 0.038 (1) | 0.031 (1) | 0.004 (1) | 0.022 (1) | 0.004 (1) |
C2 | 0.054 (1) | 0.041 (1) | 0.039 (1) | 0.005 (1) | 0.031 (1) | −0.003 (1) |
C3 | 0.055 (1) | 0.038 (1) | 0.037 (1) | −0.003 (1) | 0.026 (1) | −0.005 (1) |
C4 | 0.042 (1) | 0.039 (1) | 0.031 (1) | −0.002 (1) | 0.019 (1) | 0.001 (1) |
C5 | 0.047 (1) | 0.046 (1) | 0.041 (1) | −0.010 (1) | 0.020 (1) | −0.003 (1) |
C6 | 0.041 (1) | 0.060 (1) | 0.049 (1) | −0.011 (1) | 0.025 (1) | 0.001 (1) |
C7 | 0.045 (1) | 0.060 (1) | 0.051 (1) | −0.003 (1) | 0.033 (1) | −0.003 (1) |
C8 | 0.043 (1) | 0.045 (1) | 0.045 (1) | −0.005 (1) | 0.029 (1) | −0.006 (1) |
C9 | 0.036 (1) | 0.038 (1) | 0.029 (1) | 0.001 (1) | 0.019 (1) | 0.002 (1) |
C10 | 0.036 (1) | 0.036 (1) | 0.031 (1) | 0.001 (1) | 0.021 (1) | 0.000 (1) |
C11 | 0.036 (1) | 0.041 (1) | 0.032 (1) | 0.001 (1) | 0.023 (1) | −0.001 (1) |
C12 | 0.038 (1) | 0.039 (1) | 0.039 (1) | −0.004 (1) | 0.026 (1) | −0.005 (1) |
C13 | 0.048 (1) | 0.061 (1) | 0.042 (1) | −0.013 (1) | 0.032 (1) | −0.009 (1) |
C14 | 0.049 (1) | 0.041 (1) | 0.039 (1) | −0.004 (1) | 0.030 (1) | −0.007 (1) |
C15 | 0.039 (1) | 0.044 (1) | 0.033 (1) | −0.008 (1) | 0.024 (1) | −0.005 (1) |
C16 | 0.044 (1) | 0.062 (1) | 0.050 (1) | 0.001 (1) | 0.031 (1) | 0.009 (1) |
C17 | 0.044 (1) | 0.080 (1) | 0.056 (1) | −0.003 (1) | 0.034 (1) | 0.003 (1) |
C18 | 0.057 (1) | 0.073 (1) | 0.053 (1) | −0.019 (1) | 0.040 (1) | −0.005 (1) |
C19 | 0.066 (1) | 0.052 (1) | 0.050 (1) | −0.008 (1) | 0.036 (1) | 0.004 (1) |
C20 | 0.048 (1) | 0.045 (1) | 0.045 (1) | −0.003 (1) | 0.028 (1) | −0.001 (1) |
Geometric parameters (Å, º) top
O1—C1 | 1.291 (2) | C16—C17 | 1.380 (2) |
O2—C14 | 1.201 (2) | C17—C18 | 1.376 (3) |
O3—C14 | 1.310 (2) | C18—C19 | 1.366 (3) |
N1—C11 | 1.306 (2) | C19—C20 | 1.383 (2) |
N1—C12 | 1.475 (2) | O3—H3o | 0.86 (1) |
C1—C10 | 1.429 (2) | N1—H1n | 0.86 (1) |
C1—C2 | 1.432 (2) | C2—H2 | 0.93 |
C2—C3 | 1.349 (2) | C3—H3 | 0.93 |
C3—C4 | 1.428 (2) | C5—H5 | 0.93 |
C4—C5 | 1.407 (2) | C6—H6 | 0.93 |
C4—C9 | 1.414 (2) | C7—H7 | 0.93 |
C5—C6 | 1.362 (3) | C8—H8 | 0.93 |
C6—C7 | 1.391 (3) | C11—H11 | 0.93 |
C7—C8 | 1.372 (2) | C12—H12 | 0.98 |
C8—C9 | 1.408 (2) | C13—H13a | 0.97 |
C9—C10 | 1.453 (2) | C13—H13b | 0.97 |
C10—C11 | 1.405 (2) | C16—H16 | 0.93 |
C12—C15 | 1.514 (2) | C17—H17 | 0.93 |
C12—C13 | 1.527 (2) | C18—H18 | 0.93 |
C13—C14 | 1.512 (2) | C19—H19 | 0.93 |
C15—C20 | 1.383 (2) | C20—H20 | 0.93 |
C15—C16 | 1.387 (2) | ||
C11—N1—C12 | 124.3 (1) | C14—O3—H3o | 112 (1) |
O1—C1—C10 | 121.4 (1) | C11—N1—H1n | 113 (1) |
O1—C1—C2 | 120.7 (1) | C12—N1—H1n | 123 (1) |
C2—C1—C10 | 117.9 (1) | C3—C2—H2 | 119.3 |
C1—C2—C3 | 121.4 (2) | C1—C2—H2 | 119.3 |
C2—C3—C4 | 122.5 (2) | C2—C3—H3 | 118.8 |
C5—C4—C9 | 119.9 (2) | C4—C3—H3 | 118.8 |
C3—C4—C5 | 121.4 (2) | C6—C5—H5 | 119.4 |
C3—C4—C9 | 118.7 (1) | C4—C5—H5 | 119.4 |
C4—C5—C6 | 121.2 (2) | C5—C6—H6 | 120.3 |
C5—C6—C7 | 119.4 (2) | C7—C6—H6 | 120.3 |
C6—C7—C8 | 120.7 (2) | C8—C7—H7 | 119.7 |
C7—C8—C9 | 121.5 (2) | C6—C7—H7 | 119.7 |
C4—C9—C8 | 117.3 (1) | C7—C8—H8 | 119.2 |
C4—C9—C10 | 119.1 (1) | C9—C8—H8 | 119.2 |
C8—C9—C10 | 123.6 (1) | N1—C11—H11 | 117.4 |
C1—C10—C11 | 119.9 (1) | C10—C11—H11 | 117.4 |
C1—C10—C9 | 120.3 (1) | N1—C12—H12 | 108.2 |
C9—C10—C11 | 119.8 (1) | C15—C12—H12 | 108.2 |
N1—C11—C10 | 125.2 (1) | C13—C12—H12 | 108.2 |
N1—C12—C15 | 109.0 (1) | C14—C13—H13a | 108.6 |
N1—C12—C13 | 111.3 (1) | C12—C13—H13a | 108.6 |
C13—C12—C15 | 111.7 (1) | C14—C13—H13b | 108.6 |
C12—C13—C14 | 114.8 (1) | C12—C13—H13b | 108.6 |
O2—C14—O3 | 124.2 (2) | H13a—C13—H13b | 107.5 |
O2—C14—C13 | 124.1 (2) | C17—C16—H16 | 119.7 |
O3—C14—C13 | 111.6 (1) | C15—C16—H16 | 119.7 |
C12—C15—C16 | 120.8 (2) | C18—C17—H17 | 120.1 |
C12—C15—C20 | 120.5 (1) | C16—C17—H17 | 120.1 |
C16—C15—C20 | 118.7 (2) | C19—C18—H18 | 119.9 |
C15—C16—C17 | 120.7 (2) | C17—C18—H18 | 119.9 |
C16—C17—C18 | 119.8 (2) | C18—C19—H19 | 119.9 |
C17—C18—C19 | 120.2 (2) | C20—C19—H19 | 119.9 |
C18—C19—C20 | 120.3 (2) | C15—C20—H20 | 119.8 |
C15—C20—C19 | 120.3 (2) | C19—C20—H20 | 119.8 |
O1—C1—C2—C3 | −177.8 (1) | C4—C9—C10—C1 | 2.6 (2) |
C10—C1—C2—C3 | 3.0 (2) | C12—N1—C11—C10 | −172.8 (1) |
C1—C2—C3—C4 | −0.7 (3) | C1—C10—C11—N1 | 8.4 (2) |
C2—C3—C4—C5 | −179.5 (2) | C9—C10—C11—N1 | −174.7 (1) |
C2—C3—C4—C9 | −0.7 (2) | C11—N1—C12—C15 | 143.6 (1) |
C9—C4—C5—C6 | 2.0 (2) | C11—N1—C12—C13 | −92.8 (2) |
C3—C4—C5—C6 | −179.3 (2) | N1—C12—C13—C14 | 73.3 (2) |
C4—C5—C6—C7 | 0.1 (3) | C15—C12—C13—C14 | −164.6 (2) |
C5—C6—C7—C8 | −1.0 (3) | C12—C13—C14—O2 | 11.5 (3) |
C6—C7—C8—C9 | −0.2 (3) | C12—C13—C14—O3 | −169.3 (2) |
C7—C8—C9—C4 | 2.2 (2) | N1—C12—C15—C20 | −114.7 (2) |
C7—C8—C9—C10 | −179.4 (2) | C13—C12—C15—C20 | 121.9 (2) |
C5—C4—C9—C8 | −3.0 (2) | N1—C12—C15—C16 | 65.3 (2) |
C3—C4—C9—C8 | 178.2 (1) | C13—C12—C15—C16 | −58.1 (2) |
C5—C4—C9—C10 | 178.5 (1) | C20—C15—C16—C17 | −0.2 (3) |
C3—C4—C9—C10 | −0.3 (2) | C12—C15—C16—C17 | 179.8 (2) |
O1—C1—C10—C11 | −6.2 (2) | C15—C16—C17—C18 | 0.2 (3) |
C2—C1—C10—C11 | 173.0 (1) | C16—C17—C18—C19 | −0.2 (3) |
O1—C1—C10—C9 | 176.9 (1) | C17—C18—C19—C20 | 0.2 (3) |
C2—C1—C10—C9 | −4.0 (2) | C16—C15—C20—C19 | 0.3 (2) |
C8—C9—C10—C11 | 7.3 (2) | C12—C15—C20—C19 | −179.7 (2) |
C4—C9—C10—C11 | −174.3 (1) | C18—C19—C20—C15 | −0.3 (3) |
C8—C9—C10—C1 | −175.7 (1) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3o···O1i | 0.86 (1) | 1.70 (1) | 2.547 (2) | 169 (2) |
N1—H1n···O1 | 0.86 (1) | 1.91 (1) | 2.609 (2) | 138 (2) |
Symmetry code: (i) x, −y+1, z−1/2. |