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The new crystal structure analysis of the title compound, [Cu(NO3)(C5H8N2)(C14H23N5O)]NO3, reveals that the copper(II) ion lies in a distorted octahedral environment, with four N atoms in the equatorial plane and two O atoms at the axial positions. The O atoms of the nitrate group are involved in intra- and intermolecular hydrogen bonding.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805001170/su6154sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805001170/su6154Isup2.hkl
Contains datablock I

CCDC reference: 263567

Key indicators

  • Single-crystal X-ray study
  • T = 173 K
  • Mean [sigma](C-C) = 0.010 Å
  • Disorder in main residue
  • R factor = 0.087
  • wR factor = 0.231
  • Data-to-parameter ratio = 15.5

checkCIF/PLATON results

No syntax errors found



Alert level B PLAT201_ALERT_2_B Isotropic non-H Atoms in Main Residue(s) ....... 3 PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.73 Ratio PLAT222_ALERT_3_B Large Non-Solvent H Ueq(max)/Ueq(min) ... 4.69 Ratio PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C92
Alert level C RINTA01_ALERT_3_C The value of Rint is greater than 0.10 Rint given 0.130 PLAT020_ALERT_3_C The value of Rint is greater than 0.10 ......... 0.13 PLAT202_ALERT_3_C Isotropic non-H Atoms in Anion/Solvent ......... 1 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O5 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C72 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for N8 PLAT301_ALERT_3_C Main Residue Disorder ......................... 18.00 Perc. PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 20.00 Perc. PLAT341_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 10 PLAT432_ALERT_2_C Short Inter X...Y Contact O7 .. C91 .. 2.93 Ang. PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2 N O3
Alert level G FORMU01_ALERT_1_G There is a discrepancy between the atom counts in the _chemical_formula_sum and _chemical_formula_moiety. This is usually due to the moiety formula being in the wrong format. Atom count from _chemical_formula_sum: C19 H31 Cu1 N9 O7 Atom count from _chemical_formula_moiety:C19 H31 Cu1 N9 O5
0 ALERT level A = In general: serious problem 4 ALERT level B = Potentially serious problem 11 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 7 ALERT type 2 Indicator that the structure model may be wrong or deficient 6 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: CrysAlis CCD (Oxford Diffraction, 2001); cell refinement: CrysAlis RED (Oxford Diffraction, 2001); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.

(3,5-dimethyl-1H-pyrazole-κN2)[N,N-bis(3,5-dimethyl-1H-pyrazol-1-ylmethyl- κN2)-2-hydroxyethylamine-κN]nitratocopper(II) nitrate top
Crystal data top
[Cu(NO3)(C5H8N2)(C14H23N5O)]NO3Z = 2
Mr = 561.07F(000) = 586
Triclinic, P1Dx = 1.516 Mg m3
Hall symbol: -P 1Melting point: 462 K
a = 8.351 (1) ÅMo Kα radiation, λ = 0.71069 Å
b = 11.220 (1) ÅCell parameters from 17830 reflections
c = 13.566 (1) Åθ = 3.3–26.5°
α = 89.40 (1)°µ = 0.95 mm1
β = 75.91 (1)°T = 173 K
γ = 85.68 (1)°Parallelepiped, blue
V = 1229.3 (2) Å30.29 × 0.15 × 0.10 mm
Data collection top
Oxford Diffraction Xcalibur CCD
diffractometer
4170 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.130
Graphite monochromatorθmax = 26.6°, θmin = 3.3°
ω scansh = 1010
17830 measured reflectionsk = 1414
5106 independent reflectionsl = 1717
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.087Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.231H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0861P)2 + 7.0572P]
where P = (Fo2 + 2Fc2)/3
5106 reflections(Δ/σ)max < 0.001
329 parametersΔρmax = 1.25 e Å3
12 restraintsΔρmin = 0.74 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Cu0.17247 (8)0.26268 (6)0.25884 (5)0.0254 (2)
N40.0407 (6)0.3976 (4)0.2155 (3)0.0245 (9)
N90.1264 (6)0.3975 (4)0.2509 (4)0.0256 (10)
H90.17510.34920.29620.031*
N20.0689 (6)0.1357 (4)0.1992 (4)0.0280 (10)
N80.2004 (7)0.1707 (5)0.4205 (4)0.0359 (12)
N10.0867 (6)0.0277 (4)0.2445 (4)0.0289 (10)
N60.2405 (6)0.3466 (5)0.3690 (4)0.0315 (11)
O60.2946 (6)0.2284 (5)0.3752 (4)0.0490 (13)
O50.0722 (6)0.2172 (5)0.4279 (4)0.0459 (12)
O70.2326 (8)0.0711 (5)0.4542 (5)0.0683 (17)
N70.5046 (11)0.2098 (6)0.1195 (4)0.061 (2)
O40.3787 (8)0.1793 (7)0.0881 (5)0.0746 (19)
O30.6370 (9)0.2445 (7)0.0574 (5)0.085 (2)
O210.5328 (16)0.1934 (10)0.2061 (7)0.064 (3)*0.589 (14)
C610.1844 (8)0.0145 (5)0.3199 (5)0.0343 (13)0.589 (14)
H61A0.25250.06040.30880.041*0.589 (14)
H61B0.11150.01330.38750.041*0.589 (14)
N310.2903 (6)0.1150 (4)0.3117 (4)0.0373 (13)0.589 (14)
C710.4650 (9)0.1061 (8)0.2569 (6)0.022 (2)*0.589 (14)
H71A0.51760.02880.26800.026*0.589 (14)
H71B0.52310.16790.27980.026*0.589 (14)
C810.4680 (12)0.1222 (7)0.1439 (6)0.027 (2)*0.589 (14)
H81A0.57930.10560.10210.033*0.589 (14)
H81B0.39560.06870.12360.033*0.589 (14)
O110.4094 (5)0.2481 (4)0.1333 (3)0.0380 (10)0.589 (14)
H11O0.40590.26060.07410.057*
N510.3084 (6)0.2693 (5)0.4280 (4)0.0379 (13)0.589 (14)
C910.2874 (14)0.1453 (7)0.4229 (6)0.027 (2)*0.589 (14)
H91A0.18270.12670.46760.032*0.589 (14)
H91B0.37590.09890.44390.032*0.589 (14)
O220.4557 (15)0.2208 (10)0.2144 (6)0.035 (3)*0.411 (14)
C620.1844 (8)0.0145 (5)0.3199 (5)0.0343 (13)0.411 (14)
H62A0.25250.06040.30880.041*0.411 (14)
H62B0.11150.01330.38750.041*0.411 (14)
N320.2903 (6)0.1150 (4)0.3117 (4)0.0373 (13)0.411 (14)
C720.425 (2)0.0736 (14)0.2169 (11)0.055 (5)*0.411 (14)
H72A0.49740.01260.23820.066*0.411 (14)
H72B0.37020.03510.17160.066*0.411 (14)
C820.5338 (15)0.1648 (12)0.1542 (13)0.041 (4)*0.411 (14)
H82A0.60080.20100.19320.049*0.411 (14)
H82B0.60480.12940.09250.049*0.411 (14)
N520.3084 (6)0.2693 (5)0.4280 (4)0.0379 (13)0.411 (14)
O120.4094 (5)0.2481 (4)0.1333 (3)0.0380 (10)0.411 (14)
C920.361 (3)0.1444 (12)0.3971 (16)0.068 (6)*0.411 (14)
H92A0.32250.09170.45370.082*0.411 (14)
H92B0.48080.13370.37650.082*0.411 (14)
C10.0025 (11)0.1794 (6)0.2504 (6)0.054 (2)
H1A0.11250.21760.23080.082*
H1B0.07070.22290.22210.082*
H1C0.03480.17820.32320.082*
C20.0034 (8)0.0559 (5)0.2122 (5)0.0355 (14)
C30.0716 (8)0.0012 (6)0.1420 (5)0.0368 (14)
H30.13930.03260.10650.044*
C40.0264 (7)0.1187 (5)0.1347 (5)0.0302 (12)
C50.0652 (10)0.2130 (6)0.0642 (6)0.0458 (17)
H5A0.16260.26130.09780.069*
H5B0.08440.17610.00500.069*
H5C0.02620.26220.04430.069*
C100.4171 (11)0.2626 (12)0.5833 (6)0.082 (3)
H10A0.39340.18010.58520.122*
H10B0.37030.29870.64880.122*
H10C0.53480.26810.56570.122*
C110.3435 (10)0.3263 (9)0.5055 (5)0.057 (2)
C120.2963 (10)0.4471 (9)0.4959 (6)0.058 (2)
H120.30600.50960.53810.069*
C130.2322 (8)0.4552 (7)0.4108 (5)0.0378 (14)
C140.1644 (9)0.5663 (6)0.3706 (6)0.0459 (17)
H14A0.23510.58450.30600.069*
H14B0.15870.63100.41730.069*
H14C0.05540.55520.36260.069*
C150.2379 (8)0.5137 (6)0.0920 (5)0.0360 (14)
H15A0.31740.47640.12540.054*
H15B0.24450.59870.09180.054*
H15C0.26090.48460.02330.054*
C160.0683 (7)0.4846 (5)0.1473 (4)0.0260 (11)
C170.0861 (7)0.5412 (5)0.1397 (4)0.0304 (12)
H170.10270.60510.09820.037*
C180.2058 (7)0.4829 (5)0.2060 (4)0.0280 (12)
C190.3901 (8)0.4933 (6)0.2270 (6)0.0412 (15)
H19A0.42520.43790.18450.062*
H19B0.42760.57320.21300.062*
H19C0.43610.47530.29710.062*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu0.0288 (4)0.0201 (3)0.0315 (4)0.0014 (2)0.0165 (3)0.0044 (2)
N40.027 (2)0.024 (2)0.025 (2)0.0003 (18)0.0119 (19)0.0027 (18)
N90.026 (2)0.020 (2)0.031 (2)0.0017 (18)0.0081 (19)0.0074 (18)
N20.032 (2)0.017 (2)0.037 (3)0.0035 (18)0.015 (2)0.0013 (18)
N80.036 (3)0.040 (3)0.033 (3)0.004 (2)0.012 (2)0.013 (2)
N10.036 (3)0.021 (2)0.032 (2)0.0013 (19)0.012 (2)0.0024 (19)
N60.030 (3)0.039 (3)0.029 (2)0.010 (2)0.014 (2)0.010 (2)
O60.037 (2)0.055 (3)0.062 (3)0.008 (2)0.024 (2)0.031 (3)
O50.033 (2)0.062 (3)0.047 (3)0.002 (2)0.018 (2)0.007 (2)
O70.083 (4)0.041 (3)0.081 (4)0.009 (3)0.021 (3)0.031 (3)
N70.106 (6)0.041 (3)0.029 (3)0.029 (4)0.014 (3)0.004 (2)
O40.070 (4)0.091 (5)0.054 (4)0.009 (4)0.002 (3)0.008 (3)
O30.084 (5)0.118 (6)0.050 (4)0.042 (4)0.025 (3)0.005 (4)
C610.037 (3)0.025 (3)0.044 (3)0.001 (2)0.017 (3)0.007 (2)
N310.029 (3)0.028 (3)0.061 (3)0.002 (2)0.025 (2)0.021 (2)
O110.034 (2)0.045 (3)0.034 (2)0.012 (2)0.0102 (19)0.0029 (19)
N510.026 (3)0.060 (4)0.031 (3)0.002 (2)0.015 (2)0.016 (2)
C620.037 (3)0.025 (3)0.044 (3)0.001 (2)0.017 (3)0.007 (2)
N320.029 (3)0.028 (3)0.061 (3)0.002 (2)0.025 (2)0.021 (2)
N520.026 (3)0.060 (4)0.031 (3)0.002 (2)0.015 (2)0.016 (2)
O120.034 (2)0.045 (3)0.034 (2)0.012 (2)0.0102 (19)0.0029 (19)
C10.072 (5)0.029 (3)0.061 (5)0.011 (3)0.009 (4)0.001 (3)
C20.033 (3)0.025 (3)0.046 (4)0.003 (2)0.003 (3)0.012 (3)
C30.032 (3)0.036 (3)0.044 (3)0.001 (3)0.010 (3)0.013 (3)
C40.028 (3)0.029 (3)0.036 (3)0.005 (2)0.014 (2)0.009 (2)
C50.067 (5)0.032 (3)0.049 (4)0.010 (3)0.038 (4)0.007 (3)
C100.056 (5)0.157 (11)0.035 (4)0.020 (6)0.026 (4)0.006 (5)
C110.045 (4)0.102 (7)0.026 (3)0.010 (4)0.017 (3)0.000 (4)
C120.048 (4)0.088 (6)0.040 (4)0.016 (4)0.022 (3)0.026 (4)
C130.028 (3)0.055 (4)0.030 (3)0.002 (3)0.007 (2)0.010 (3)
C140.045 (4)0.042 (4)0.053 (4)0.007 (3)0.017 (3)0.023 (3)
C150.032 (3)0.037 (3)0.041 (3)0.001 (3)0.015 (3)0.010 (3)
C160.031 (3)0.024 (3)0.026 (3)0.000 (2)0.013 (2)0.003 (2)
C170.034 (3)0.028 (3)0.031 (3)0.005 (2)0.014 (2)0.005 (2)
C180.032 (3)0.023 (3)0.030 (3)0.007 (2)0.012 (2)0.000 (2)
C190.027 (3)0.042 (4)0.054 (4)0.002 (3)0.010 (3)0.005 (3)
Geometric parameters (Å, º) top
Cu—N41.973 (4)C72—H72A0.9700
Cu—N61.991 (5)C72—H72B0.9700
Cu—N21.995 (5)C82—H82A0.9700
Cu—N312.074 (5)C82—H82B0.9700
Cu—O52.747 (5)C92—H92A0.9700
Cu—O112.273 (5)C92—H92B0.9700
N4—C161.332 (7)C1—C21.475 (9)
N4—N91.361 (6)C1—H1A0.9600
N9—C181.349 (7)C1—H1B0.9600
N9—H90.8600C1—H1C0.9600
N2—C41.342 (7)C2—C31.387 (10)
N2—N11.367 (6)C3—C41.395 (9)
N8—O71.227 (7)C3—H30.9300
N8—O61.251 (7)C4—C51.489 (9)
N8—O51.252 (7)C5—H5A0.9600
N1—C21.345 (8)C5—H5B0.9600
N1—C611.456 (8)C5—H5C0.9600
N6—C131.339 (8)C10—C111.494 (10)
N6—N511.359 (7)C10—H10A0.9600
N7—O41.250 (9)C10—H10B0.9600
N7—O31.254 (9)C10—H10C0.9600
N7—O221.260 (8)C11—C121.397 (13)
N7—O211.272 (8)C12—C131.385 (9)
C61—N311.472 (8)C12—H120.9300
C61—H61A0.9700C13—C141.483 (10)
C61—H61B0.9700C14—H14A0.9600
N31—C711.463 (7)C14—H14B0.9600
N31—C911.543 (8)C14—H14C0.9600
C71—C811.535 (8)C15—C161.490 (8)
C71—H71A0.9700C15—H15A0.9600
C71—H71B0.9700C15—H15B0.9600
C81—O111.478 (7)C15—H15C0.9600
C81—H81A0.9700C16—C171.420 (8)
C81—H81B0.9700C17—C181.373 (9)
O11—H11O0.8200C17—H170.9300
N51—C111.339 (9)C18—C191.490 (8)
N51—C911.421 (8)C19—H19A0.9600
C91—H91A0.9700C19—H19B0.9600
C91—H91B0.9700C19—H19C0.9600
C72—C821.531 (10)
N4—Cu—N698.1 (2)C82—C72—H72A107.4
N4—Cu—N295.46 (18)C82—C72—H72B107.4
N6—Cu—N2155.7 (2)H72A—C72—H72B106.9
N4—Cu—N31174.67 (19)C72—C82—H82A111.8
N6—Cu—N3182.9 (2)C72—C82—H82B111.8
N2—Cu—N3181.79 (19)H82A—C82—H82B109.5
N4—Cu—O593.66 (17)H92A—C92—H92B108.3
N6—Cu—O577.25 (17)C2—C1—H1A109.5
N2—Cu—O581.82 (18)C2—C1—H1B109.5
N31—Cu—O581.46 (18)H1A—C1—H1B109.5
N4—Cu—O11103.30 (17)C2—C1—H1C109.5
N6—Cu—O11102.54 (19)H1A—C1—H1C109.5
N2—Cu—O1193.82 (19)H1B—C1—H1C109.5
N31—Cu—O1181.48 (18)N1—C2—C3105.4 (5)
C16—N4—N9106.8 (4)N1—C2—C1122.5 (6)
C16—N4—Cu136.6 (4)C3—C2—C1132.1 (6)
N9—N4—Cu115.9 (3)C2—C3—C4107.2 (5)
C18—N9—N4111.2 (4)C2—C3—H3126.4
C18—N9—H9124.4C4—C3—H3126.4
N4—N9—H9124.4N2—C4—C3109.4 (5)
C4—N2—N1105.6 (5)N2—C4—C5122.8 (5)
C4—N2—Cu142.4 (4)C3—C4—C5127.7 (5)
N1—N2—Cu111.7 (3)C4—C5—H5A109.5
O7—N8—O6120.4 (6)C4—C5—H5B109.5
O7—N8—O5121.8 (6)H5A—C5—H5B109.5
O6—N8—O5117.7 (5)C4—C5—H5C109.5
C2—N1—N2112.3 (5)H5A—C5—H5C109.5
C2—N1—C61127.7 (5)H5B—C5—H5C109.5
N2—N1—C61120.0 (5)C11—C10—H10A109.5
C13—N6—N51106.5 (5)C11—C10—H10B109.5
C13—N6—Cu141.3 (4)H10A—C10—H10B109.5
N51—N6—Cu112.0 (4)C11—C10—H10C109.5
N8—O5—Cu121.2 (4)H10A—C10—H10C109.5
O4—N7—O3119.8 (6)H10B—C10—H10C109.5
O4—N7—O22106.3 (9)N51—C11—C12106.4 (6)
O3—N7—O22132.1 (8)N51—C11—C10122.6 (9)
O4—N7—O21129.6 (8)C12—C11—C10131.0 (8)
O3—N7—O21109.4 (9)C13—C12—C11106.2 (7)
N1—C61—N31109.4 (5)C13—C12—H12126.9
N1—C61—H61A109.8C11—C12—H12126.9
N31—C61—H61A109.8N6—C13—C12109.7 (7)
N1—C61—H61B109.8N6—C13—C14124.4 (5)
N31—C61—H61B109.8C12—C13—C14125.9 (7)
H61A—C61—H61B108.2C13—C14—H14A109.5
C71—N31—C61122.9 (6)C13—C14—H14B109.5
C71—N31—C91105.9 (6)H14A—C14—H14B109.5
C61—N31—C91104.2 (5)C13—C14—H14C109.5
C71—N31—Cu108.6 (4)H14A—C14—H14C109.5
C61—N31—Cu108.5 (3)H14B—C14—H14C109.5
C91—N31—Cu105.5 (4)C16—C15—H15A109.5
N31—C71—C81106.3 (6)C16—C15—H15B109.5
N31—C71—H71A110.5H15A—C15—H15B109.5
C81—C71—H71A110.5C16—C15—H15C109.5
N31—C71—H71B110.5H15A—C15—H15C109.5
C81—C71—H71B110.5H15B—C15—H15C109.5
H71A—C71—H71B108.7N4—C16—C17108.9 (5)
O11—C81—C71105.8 (6)N4—C16—C15122.8 (5)
O11—C81—H81A110.6C17—C16—C15128.3 (5)
C71—C81—H81A110.6C18—C17—C16106.3 (5)
O11—C81—H81B110.6C18—C17—H17126.9
C71—C81—H81B110.6C16—C17—H17126.9
H81A—C81—H81B108.7N9—C18—C17106.8 (5)
C11—N51—N6111.3 (6)N9—C18—C19120.6 (5)
C11—N51—C91126.0 (6)C17—C18—C19132.4 (5)
N6—N51—C91119.4 (5)C18—C19—H19A109.5
N51—C91—N31107.6 (6)C18—C19—H19B109.5
N51—C91—H91A110.2H19A—C19—H19B109.5
N31—C91—H91A110.2C18—C19—H19C109.5
N51—C91—H91B110.2H19A—C19—H19C109.5
N31—C91—H91B110.2H19B—C19—H19C109.5
H91A—C91—H91B108.5
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N9—H9···O60.861.912.756 (7)169
O11—H11O···O3i0.821.922.708 (8)162
Symmetry code: (i) x+1, y, z.
 

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