An X-ray diffraction study of the title compound, C
13H
15NO
4, has demonstrated that the formation of intramolecular O—H
O=C hydrogen bonds leads to the lengthening of the carbonyl C=O bonds, shortening of the (C=)C—O(—H) bond and delocalization of the electron density within the dihydropyridine ring.
Supporting information
CCDC reference: 274327
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.004 Å
- R factor = 0.047
- wR factor = 0.132
- Data-to-parameter ratio = 12.6
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT026_ALERT_3_C Ratio Observed / Unique Reflections too Low .... 45 Perc.
PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K
PLAT200_ALERT_1_C Check the Reported _diffrn_ambient_temperature . 293 K
PLAT230_ALERT_2_C Hirshfeld Test Diff for O2 - C13 .. 5.04 su
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
4 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: P3 (Siemens, 1989); cell refinement: P3; data reduction: XDISK (Siemens, 1991); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP (Siemens, 1991); software used to prepare material for publication: SHELXL97.
1-Allyl-4-hydroxy-2-oxo-1,2,5,6,7,8-hexahydroquinoline-3-carboxylic acid
top
Crystal data top
C13H15NO4 | F(000) = 1056 |
Mr = 249.26 | Dx = 1.381 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 24 reflections |
a = 16.823 (4) Å | θ = 10–11° |
b = 7.179 (2) Å | µ = 0.10 mm−1 |
c = 19.847 (5) Å | T = 293 K |
V = 2397.0 (11) Å3 | Needle, colourless |
Z = 8 | 0.30 × 0.10 × 0.10 mm |
Data collection top
Siemens P3/PC diffractometer | Rint = 0.03 |
Radiation source: fine-focus sealed tube | θmax = 25.1°, θmin = 2.1° |
Graphite monochromator | h = 0→20 |
θ–2θ scans | k = 0→8 |
2087 measured reflections | l = −23→0 |
2086 independent reflections | 2 standard reflections every 98 reflections |
935 reflections with I > 2σ(I) | intensity decay: 5% |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 0.85 | w = 1/[σ2(Fo2) + (0.0714P)2] where P = (Fo2 + 2Fc2)/3 |
2086 reflections | (Δ/σ)max < 0.001 |
165 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 1.05775 (12) | 0.3007 (3) | 0.41713 (11) | 0.0417 (6) | |
O1 | 1.14931 (12) | 0.3376 (3) | 0.50184 (11) | 0.0639 (7) | |
O2 | 0.98629 (15) | 0.2277 (3) | 0.64867 (11) | 0.0736 (7) | |
O3 | 1.11128 (14) | 0.2978 (4) | 0.62195 (11) | 0.0714 (7) | |
H3O | 1.1380 | 0.3103 | 0.5877 | 0.086* | |
O4 | 0.88264 (12) | 0.1831 (3) | 0.55454 (9) | 0.0604 (6) | |
H4O | 0.8993 | 0.1951 | 0.5931 | 0.072* | |
C1 | 1.07847 (18) | 0.3009 (4) | 0.48444 (14) | 0.0448 (8) | |
C2 | 1.01776 (16) | 0.2601 (4) | 0.53308 (13) | 0.0397 (7) | |
C3 | 0.94084 (16) | 0.2223 (4) | 0.51073 (14) | 0.0409 (8) | |
C4 | 0.92086 (16) | 0.2244 (4) | 0.44117 (13) | 0.0382 (7) | |
C5 | 0.83565 (17) | 0.1906 (4) | 0.42068 (14) | 0.0535 (8) | |
H5A | 0.8009 | 0.2627 | 0.4496 | 0.064* | |
H5B | 0.8231 | 0.0599 | 0.4272 | 0.064* | |
C6 | 0.81978 (18) | 0.2430 (5) | 0.34751 (14) | 0.0607 (9) | |
H6A | 0.7693 | 0.1907 | 0.3333 | 0.073* | |
H6B | 0.8164 | 0.3774 | 0.3435 | 0.073* | |
C7 | 0.88517 (18) | 0.1710 (5) | 0.30240 (14) | 0.0585 (9) | |
H7A | 0.8727 | 0.2007 | 0.2559 | 0.070* | |
H7B | 0.8883 | 0.0366 | 0.3064 | 0.070* | |
C8 | 0.96555 (18) | 0.2560 (4) | 0.32073 (14) | 0.0520 (8) | |
H8A | 1.0073 | 0.1851 | 0.2989 | 0.062* | |
H8B | 0.9678 | 0.3824 | 0.3035 | 0.062* | |
C9 | 0.98082 (16) | 0.2595 (4) | 0.39514 (13) | 0.0395 (7) | |
C10 | 1.12272 (17) | 0.3462 (4) | 0.36924 (15) | 0.0524 (8) | |
H10A | 1.1550 | 0.4452 | 0.3881 | 0.063* | |
H10B | 1.0998 | 0.3915 | 0.3275 | 0.063* | |
C11 | 1.17457 (19) | 0.1818 (4) | 0.35433 (16) | 0.0580 (9) | |
H11 | 1.2008 | 0.1262 | 0.3903 | 0.070* | |
C12 | 1.18556 (19) | 0.1116 (5) | 0.29535 (18) | 0.0763 (11) | |
H12A | 1.1603 | 0.1634 | 0.2581 | 0.092* | |
H12B | 1.2187 | 0.0090 | 0.2900 | 0.092* | |
C13 | 1.0371 (2) | 0.2601 (4) | 0.60523 (17) | 0.0555 (9) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0347 (13) | 0.0456 (16) | 0.0450 (16) | 0.0021 (11) | 0.0063 (11) | −0.0005 (11) |
O1 | 0.0432 (13) | 0.0742 (17) | 0.0745 (15) | −0.0006 (12) | −0.0098 (11) | −0.0106 (12) |
O2 | 0.0930 (18) | 0.0883 (18) | 0.0394 (13) | 0.0126 (15) | 0.0036 (13) | 0.0016 (12) |
O3 | 0.0775 (16) | 0.0765 (17) | 0.0601 (14) | 0.0034 (15) | −0.0270 (13) | −0.0065 (14) |
O4 | 0.0603 (13) | 0.0812 (16) | 0.0397 (12) | −0.0070 (12) | 0.0148 (11) | 0.0064 (12) |
C1 | 0.0451 (19) | 0.042 (2) | 0.047 (2) | 0.0021 (15) | −0.0063 (15) | −0.0064 (14) |
C2 | 0.0468 (17) | 0.0340 (16) | 0.0383 (17) | 0.0098 (15) | −0.0016 (15) | −0.0030 (13) |
C3 | 0.0465 (18) | 0.0368 (18) | 0.0393 (19) | 0.0047 (14) | 0.0070 (14) | 0.0034 (14) |
C4 | 0.0420 (16) | 0.0384 (16) | 0.0342 (16) | 0.0012 (13) | 0.0013 (13) | −0.0004 (13) |
C5 | 0.0432 (17) | 0.061 (2) | 0.056 (2) | −0.0081 (15) | −0.0021 (15) | −0.0057 (15) |
C6 | 0.0512 (19) | 0.071 (2) | 0.0594 (19) | 0.0001 (19) | −0.0191 (17) | −0.0029 (18) |
C7 | 0.067 (2) | 0.070 (2) | 0.0382 (17) | −0.0010 (18) | −0.0118 (17) | −0.0056 (16) |
C8 | 0.0575 (19) | 0.061 (2) | 0.0374 (16) | 0.0074 (18) | 0.0016 (15) | −0.0026 (16) |
C9 | 0.0419 (16) | 0.0367 (17) | 0.0401 (17) | 0.0038 (14) | 0.0028 (14) | −0.0006 (14) |
C10 | 0.0469 (17) | 0.050 (2) | 0.0605 (19) | −0.0029 (16) | 0.0152 (16) | 0.0016 (16) |
C11 | 0.0521 (19) | 0.065 (2) | 0.057 (2) | 0.0042 (17) | 0.0136 (16) | 0.0014 (18) |
C12 | 0.070 (2) | 0.086 (3) | 0.073 (2) | 0.007 (2) | 0.0205 (19) | −0.004 (2) |
C13 | 0.071 (3) | 0.0444 (19) | 0.051 (2) | 0.0117 (19) | −0.016 (2) | −0.0055 (17) |
Geometric parameters (Å, º) top
N1—C1 | 1.381 (3) | C5—H5B | 0.9700 |
N1—C9 | 1.397 (3) | C6—C7 | 1.510 (4) |
N1—C10 | 1.485 (3) | C6—H6A | 0.9700 |
O1—C1 | 1.268 (3) | C6—H6B | 0.9700 |
O2—C13 | 1.236 (4) | C7—C8 | 1.528 (4) |
O3—C13 | 1.320 (4) | C7—H7A | 0.9700 |
O3—H3O | 0.8200 | C7—H7B | 0.9700 |
O4—C3 | 1.339 (3) | C8—C9 | 1.499 (4) |
O4—H4O | 0.8200 | C8—H8A | 0.9700 |
C1—C2 | 1.436 (4) | C8—H8B | 0.9700 |
C2—C3 | 1.395 (4) | C10—C11 | 1.497 (4) |
C2—C13 | 1.468 (4) | C10—H10A | 0.9700 |
C3—C4 | 1.421 (4) | C10—H10B | 0.9700 |
C4—C9 | 1.384 (4) | C11—C12 | 1.288 (4) |
C4—C5 | 1.510 (4) | C11—H11 | 0.9300 |
C5—C6 | 1.524 (4) | C12—H12A | 0.9300 |
C5—H5A | 0.9700 | C12—H12B | 0.9300 |
| | | |
C1—N1—C9 | 122.4 (2) | C6—C7—H7A | 109.3 |
C1—N1—C10 | 115.7 (2) | C8—C7—H7A | 109.3 |
C9—N1—C10 | 121.9 (2) | C6—C7—H7B | 109.3 |
C13—O3—H3O | 109.5 | C8—C7—H7B | 109.3 |
C3—O4—H4O | 109.5 | H7A—C7—H7B | 108.0 |
O1—C1—N1 | 120.1 (3) | C9—C8—C7 | 113.1 (2) |
O1—C1—C2 | 121.9 (3) | C9—C8—H8A | 109.0 |
N1—C1—C2 | 118.1 (2) | C7—C8—H8A | 109.0 |
C3—C2—C1 | 119.1 (3) | C9—C8—H8B | 109.0 |
C3—C2—C13 | 121.0 (3) | C7—C8—H8B | 109.0 |
C1—C2—C13 | 119.9 (3) | H8A—C8—H8B | 107.8 |
O4—C3—C2 | 120.8 (3) | C4—C9—N1 | 120.5 (3) |
O4—C3—C4 | 117.4 (2) | C4—C9—C8 | 121.5 (3) |
C2—C3—C4 | 121.8 (3) | N1—C9—C8 | 118.0 (2) |
C9—C4—C3 | 118.1 (3) | N1—C10—C11 | 112.5 (2) |
C9—C4—C5 | 122.9 (2) | N1—C10—H10A | 109.1 |
C3—C4—C5 | 119.0 (2) | C11—C10—H10A | 109.1 |
C4—C5—C6 | 112.5 (2) | N1—C10—H10B | 109.1 |
C4—C5—H5A | 109.1 | C11—C10—H10B | 109.1 |
C6—C5—H5A | 109.1 | H10A—C10—H10B | 107.8 |
C4—C5—H5B | 109.1 | C12—C11—C10 | 124.9 (3) |
C6—C5—H5B | 109.1 | C12—C11—H11 | 117.6 |
H5A—C5—H5B | 107.8 | C10—C11—H11 | 117.6 |
C7—C6—C5 | 110.7 (3) | C11—C12—H12A | 120.0 |
C7—C6—H6A | 109.5 | C11—C12—H12B | 120.0 |
C5—C6—H6A | 109.5 | H12A—C12—H12B | 120.0 |
C7—C6—H6B | 109.5 | O2—C13—O3 | 121.1 (3) |
C5—C6—H6B | 109.5 | O2—C13—C2 | 121.8 (3) |
H6A—C6—H6B | 108.1 | O3—C13—C2 | 117.0 (3) |
C6—C7—C8 | 111.5 (2) | | |
| | | |
C9—N1—C1—O1 | 179.3 (2) | C5—C6—C7—C8 | −61.7 (4) |
C10—N1—C1—O1 | −0.3 (4) | C6—C7—C8—C9 | 44.6 (4) |
C9—N1—C1—C2 | −1.1 (4) | C3—C4—C9—N1 | −3.2 (4) |
C10—N1—C1—C2 | 179.3 (2) | C5—C4—C9—N1 | 176.2 (3) |
O1—C1—C2—C3 | 179.5 (3) | C3—C4—C9—C8 | 177.3 (3) |
N1—C1—C2—C3 | 0.0 (4) | C5—C4—C9—C8 | −3.3 (4) |
O1—C1—C2—C13 | 0.0 (4) | C1—N1—C9—C4 | 2.8 (4) |
N1—C1—C2—C13 | −179.6 (3) | C10—N1—C9—C4 | −177.6 (2) |
C1—C2—C3—O4 | 179.8 (2) | C1—N1—C9—C8 | −177.7 (3) |
C13—C2—C3—O4 | −0.7 (4) | C10—N1—C9—C8 | 2.0 (4) |
C1—C2—C3—C4 | −0.5 (4) | C7—C8—C9—C4 | −12.4 (4) |
C13—C2—C3—C4 | 179.0 (2) | C7—C8—C9—N1 | 168.1 (3) |
O4—C3—C4—C9 | −178.2 (2) | C1—N1—C10—C11 | 81.7 (3) |
C2—C3—C4—C9 | 2.1 (4) | C9—N1—C10—C11 | −98.0 (3) |
O4—C3—C4—C5 | 2.4 (4) | N1—C10—C11—C12 | 120.3 (3) |
C2—C3—C4—C5 | −177.3 (3) | C3—C2—C13—O2 | −0.3 (5) |
C9—C4—C5—C6 | −13.3 (4) | C1—C2—C13—O2 | 179.2 (3) |
C3—C4—C5—C6 | 166.1 (3) | C3—C2—C13—O3 | −179.9 (3) |
C4—C5—C6—C7 | 44.9 (4) | C1—C2—C13—O3 | −0.3 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O1 | 0.82 | 1.73 | 2.485 (3) | 153 |
O4—H4O···O2 | 0.82 | 1.85 | 2.576 (3) | 147 |