In the title complex, [Cu(C12H12N2O3)(C5H5N)], the CuII atom has a square-planar coordination geometry, formed by the tridentate hydrazone and the monodentate pyridine ligands. The distance of 3.706 (4) Å between the centroids of the nearly parallel [dihedral angle 4.9 (5)°] pyridine ring and the benzene ring of a neighbouring complex molecule suggests the existence of π–π stacking.
Supporting information
CCDC reference: 260545
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.013 Å
- R factor = 0.067
- wR factor = 0.220
- Data-to-parameter ratio = 13.5
checkCIF/PLATON results
No syntax errors found
Alert level C
RINTA01_ALERT_3_C The value of Rint is greater than 0.10
Rint given 0.125
PLAT020_ALERT_3_C The value of Rint is greater than 0.10 ......... 0.12
PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.98
PLAT341_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 13
PLAT380_ALERT_4_C Check Incorrectly? Oriented X(sp2)-Methyl Moiety C8
PLAT380_ALERT_4_C Check Incorrectly? Oriented X(sp2)-Methyl Moiety C12
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
6 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
3 ALERT type 3 Indicator that the structure quality may be low
3 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: SMART (Siemens, 1996); cell refinement: SMART; data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXTL.
Crystal data top
[Cu(C12H12N2O3)(C5H5N)] | F(000) = 1544 |
Mr = 374.88 | Dx = 1.498 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 1882 reflections |
a = 12.503 (5) Å | θ = 3.0–19.7° |
b = 9.894 (4) Å | µ = 1.33 mm−1 |
c = 26.88 (1) Å | T = 298 K |
V = 3325 (2) Å3 | Rectangular, green |
Z = 8 | 0.42 × 0.29 × 0.23 mm |
Data collection top
Siemens SMART CCD area-detector diffractometer | 2931 independent reflections |
Radiation source: fine-focus sealed tube | 1494 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.125 |
φ and ω scans | θmax = 25.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→13 |
Tmin = 0.604, Tmax = 0.749 | k = −11→11 |
15733 measured reflections | l = −32→26 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.067 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.220 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0595P)2 + 10.1233P] where P = (Fo2 + 2Fc2)/3 |
2931 reflections | (Δ/σ)max = 0.001 |
217 parameters | Δρmax = 0.70 e Å−3 |
2 restraints | Δρmin = −0.66 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cu1 | 0.81627 (7) | 0.19885 (10) | 0.59883 (3) | 0.0501 (4) | |
N1 | 0.6669 (5) | 0.2299 (7) | 0.5917 (2) | 0.0504 (16) | |
N2 | 0.6038 (5) | 0.1441 (7) | 0.6205 (2) | 0.0505 (16) | |
N3 | 0.9699 (5) | 0.1639 (7) | 0.6146 (2) | 0.0529 (17) | |
O1 | 0.7676 (4) | 0.0617 (5) | 0.64429 (18) | 0.0524 (13) | |
O2 | 0.4348 (4) | 0.0500 (6) | 0.6606 (2) | 0.0749 (18) | |
H2 | 0.4712 | 0.0974 | 0.6421 | 0.112* | |
O3 | 0.8521 (4) | 0.3283 (6) | 0.5494 (2) | 0.0620 (16) | |
C1 | 0.6646 (6) | 0.0608 (7) | 0.6464 (3) | 0.0455 (18) | |
C2 | 0.6096 (6) | −0.0340 (8) | 0.6801 (3) | 0.0466 (19) | |
C3 | 0.4992 (7) | −0.0342 (9) | 0.6864 (3) | 0.058 (2) | |
C4 | 0.4519 (7) | −0.1223 (11) | 0.7198 (4) | 0.076 (3) | |
H4 | 0.3782 | −0.1200 | 0.7244 | 0.092* | |
C5 | 0.5111 (9) | −0.2111 (12) | 0.7456 (4) | 0.084 (3) | |
H5 | 0.4781 | −0.2693 | 0.7681 | 0.101* | |
C6 | 0.6225 (9) | −0.2167 (9) | 0.7390 (3) | 0.071 (3) | |
H6 | 0.6633 | −0.2800 | 0.7561 | 0.085* | |
C7 | 0.6701 (6) | −0.1276 (9) | 0.7068 (3) | 0.060 (2) | |
H7 | 0.7439 | −0.1296 | 0.7028 | 0.072* | |
C8 | 0.4971 (6) | 0.3208 (9) | 0.5594 (4) | 0.075 (3) | |
H8A | 0.4672 | 0.2554 | 0.5818 | 0.112* | |
H8B | 0.4746 | 0.3011 | 0.5261 | 0.112* | |
H8C | 0.4731 | 0.4095 | 0.5686 | 0.112* | |
C9 | 0.6178 (6) | 0.3152 (8) | 0.5623 (3) | 0.056 (2) | |
C10 | 0.6782 (7) | 0.4048 (8) | 0.5318 (3) | 0.059 (2) | |
H10 | 0.6399 | 0.4687 | 0.5137 | 0.071* | |
C11 | 0.7854 (7) | 0.4062 (9) | 0.5264 (3) | 0.058 (2) | |
C12 | 0.8347 (7) | 0.5052 (9) | 0.4901 (3) | 0.070 (3) | |
H12A | 0.9110 | 0.4947 | 0.4901 | 0.106* | |
H12B | 0.8167 | 0.5958 | 0.4998 | 0.106* | |
H12C | 0.8075 | 0.4879 | 0.4573 | 0.106* | |
C13 | 0.9969 (7) | 0.0739 (9) | 0.6492 (3) | 0.066 (2) | |
H13 | 0.9427 | 0.0274 | 0.6657 | 0.079* | |
C14 | 1.1013 (8) | 0.0467 (11) | 0.6616 (4) | 0.088 (3) | |
H14 | 1.1166 | −0.0185 | 0.6855 | 0.106* | |
C15 | 1.1821 (7) | 0.1148 (11) | 0.6391 (4) | 0.080 (3) | |
H15 | 1.2533 | 0.0997 | 0.6475 | 0.095* | |
C16 | 1.1539 (7) | 0.2058 (12) | 0.6037 (4) | 0.083 (3) | |
H16 | 1.2069 | 0.2526 | 0.5866 | 0.100* | |
C17 | 1.0490 (6) | 0.2301 (10) | 0.5928 (3) | 0.068 (3) | |
H17 | 1.0326 | 0.2955 | 0.5692 | 0.082* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu1 | 0.0397 (6) | 0.0661 (7) | 0.0444 (6) | 0.0035 (5) | −0.0009 (4) | 0.0038 (5) |
N1 | 0.051 (4) | 0.056 (4) | 0.045 (4) | 0.003 (3) | −0.002 (3) | 0.001 (3) |
N2 | 0.042 (4) | 0.058 (4) | 0.052 (4) | 0.006 (3) | −0.004 (3) | 0.002 (3) |
N3 | 0.043 (4) | 0.069 (5) | 0.046 (4) | −0.003 (3) | 0.008 (3) | 0.002 (3) |
O1 | 0.038 (3) | 0.071 (4) | 0.048 (3) | 0.001 (3) | −0.003 (2) | 0.005 (3) |
O2 | 0.039 (3) | 0.092 (5) | 0.093 (5) | 0.001 (3) | 0.002 (3) | 0.016 (4) |
O3 | 0.048 (3) | 0.073 (4) | 0.065 (4) | 0.007 (3) | 0.001 (3) | 0.016 (3) |
C1 | 0.044 (5) | 0.054 (5) | 0.038 (4) | −0.005 (4) | −0.003 (3) | −0.006 (4) |
C2 | 0.044 (5) | 0.051 (5) | 0.045 (4) | 0.001 (4) | −0.001 (3) | −0.011 (4) |
C3 | 0.055 (6) | 0.059 (6) | 0.060 (5) | −0.006 (4) | 0.002 (4) | −0.007 (4) |
C4 | 0.053 (6) | 0.095 (8) | 0.080 (7) | −0.015 (5) | 0.011 (5) | 0.000 (6) |
C5 | 0.078 (8) | 0.104 (9) | 0.070 (7) | −0.022 (7) | 0.009 (5) | 0.007 (6) |
C6 | 0.101 (8) | 0.059 (6) | 0.054 (5) | −0.005 (5) | −0.004 (5) | 0.010 (5) |
C7 | 0.051 (5) | 0.070 (6) | 0.059 (5) | −0.013 (5) | −0.005 (4) | −0.007 (5) |
C8 | 0.050 (5) | 0.072 (6) | 0.101 (8) | 0.010 (5) | −0.022 (5) | 0.012 (6) |
C9 | 0.054 (5) | 0.060 (5) | 0.056 (5) | 0.000 (4) | −0.017 (4) | −0.012 (5) |
C10 | 0.068 (6) | 0.062 (5) | 0.047 (5) | 0.005 (5) | −0.012 (4) | 0.008 (4) |
C11 | 0.064 (6) | 0.066 (6) | 0.045 (5) | 0.004 (5) | 0.000 (4) | −0.001 (4) |
C12 | 0.088 (7) | 0.062 (6) | 0.061 (6) | −0.005 (5) | 0.000 (5) | 0.014 (5) |
C13 | 0.054 (5) | 0.088 (7) | 0.056 (5) | 0.004 (5) | 0.004 (4) | 0.013 (5) |
C14 | 0.052 (6) | 0.125 (9) | 0.087 (7) | 0.013 (6) | −0.010 (5) | 0.030 (7) |
C15 | 0.040 (5) | 0.131 (9) | 0.068 (6) | 0.012 (6) | −0.004 (5) | 0.007 (6) |
C16 | 0.044 (5) | 0.128 (9) | 0.076 (7) | 0.003 (5) | 0.005 (4) | 0.027 (7) |
C17 | 0.043 (5) | 0.094 (7) | 0.067 (6) | −0.002 (5) | 0.002 (4) | 0.016 (5) |
Geometric parameters (Å, º) top
Cu1—O1 | 1.925 (5) | C6—H6 | 0.9300 |
Cu1—O3 | 1.900 (6) | C7—H7 | 0.9300 |
Cu1—N1 | 1.902 (6) | C8—C9 | 1.512 (9) |
Cu1—N3 | 1.998 (6) | C8—H8A | 0.9600 |
N1—N2 | 1.394 (9) | C8—H8B | 0.9600 |
N1—C9 | 1.310 (10) | C8—H8C | 0.9600 |
N2—C1 | 1.320 (9) | C9—C10 | 1.424 (11) |
N3—C17 | 1.324 (10) | C10—C11 | 1.348 (11) |
N3—C13 | 1.330 (10) | C10—H10 | 0.9300 |
O1—C1 | 1.289 (8) | C11—C12 | 1.515 (10) |
O2—C3 | 1.350 (10) | C12—H12A | 0.9600 |
O2—H2 | 0.8200 | C12—H12B | 0.9600 |
O3—C11 | 1.292 (9) | C12—H12C | 0.9600 |
C1—C2 | 1.473 (10) | C13—C14 | 1.374 (11) |
C2—C3 | 1.391 (10) | C13—H13 | 0.9300 |
C2—C7 | 1.395 (11) | C14—C15 | 1.357 (13) |
C3—C4 | 1.384 (12) | C14—H14 | 0.9300 |
C4—C5 | 1.343 (13) | C15—C16 | 1.356 (12) |
C4—H4 | 0.9300 | C15—H15 | 0.9300 |
C5—C6 | 1.405 (13) | C16—C17 | 1.365 (11) |
C5—H5 | 0.9300 | C16—H16 | 0.9300 |
C6—C7 | 1.371 (11) | C17—H17 | 0.9300 |
| | | |
O3—Cu1—N1 | 93.0 (3) | C9—C8—H8A | 109.5 |
O3—Cu1—O1 | 173.8 (2) | C9—C8—H8B | 109.5 |
N1—Cu1—O1 | 82.4 (2) | H8A—C8—H8B | 109.5 |
O3—Cu1—N3 | 92.2 (2) | C9—C8—H8C | 109.5 |
N1—Cu1—N3 | 173.4 (3) | H8A—C8—H8C | 109.5 |
O1—Cu1—N3 | 92.7 (2) | H8B—C8—H8C | 109.5 |
C9—N1—N2 | 117.6 (6) | N1—C9—C10 | 120.0 (7) |
C9—N1—Cu1 | 128.7 (6) | N1—C9—C8 | 121.5 (8) |
N2—N1—Cu1 | 113.7 (5) | C10—C9—C8 | 118.5 (8) |
C1—N2—N1 | 110.3 (6) | C11—C10—C9 | 126.5 (8) |
C17—N3—C13 | 116.9 (8) | C11—C10—H10 | 116.8 |
C17—N3—Cu1 | 122.6 (6) | C9—C10—H10 | 116.8 |
C13—N3—Cu1 | 120.5 (5) | O3—C11—C10 | 125.8 (8) |
C1—O1—Cu1 | 110.4 (4) | O3—C11—C12 | 115.5 (8) |
C3—O2—H2 | 109.5 | C10—C11—C12 | 118.6 (8) |
C11—O3—Cu1 | 125.7 (5) | C11—C12—H12A | 109.5 |
O1—C1—N2 | 123.2 (7) | C11—C12—H12B | 109.5 |
O1—C1—C2 | 119.9 (7) | H12A—C12—H12B | 109.5 |
N2—C1—C2 | 116.9 (7) | C11—C12—H12C | 109.5 |
C3—C2—C7 | 118.3 (8) | H12A—C12—H12C | 109.5 |
C3—C2—C1 | 122.6 (7) | H12B—C12—H12C | 109.5 |
C7—C2—C1 | 119.1 (7) | N3—C13—C14 | 122.8 (8) |
O2—C3—C4 | 117.9 (8) | N3—C13—H13 | 118.6 |
O2—C3—C2 | 121.9 (8) | C14—C13—H13 | 118.6 |
C4—C3—C2 | 120.3 (9) | C15—C14—C13 | 120.2 (9) |
C5—C4—C3 | 120.8 (9) | C15—C14—H14 | 119.9 |
C5—C4—H4 | 119.6 | C13—C14—H14 | 119.9 |
C3—C4—H4 | 119.6 | C16—C15—C14 | 116.6 (9) |
C4—C5—C6 | 120.4 (9) | C16—C15—H15 | 121.7 |
C4—C5—H5 | 119.8 | C14—C15—H15 | 121.7 |
C6—C5—H5 | 119.8 | C15—C16—C17 | 121.2 (9) |
C7—C6—C5 | 119.0 (9) | C15—C16—H16 | 119.4 |
C7—C6—H6 | 120.5 | C17—C16—H16 | 119.4 |
C5—C6—H6 | 120.5 | N3—C17—C16 | 122.4 (9) |
C6—C7—C2 | 121.1 (8) | N3—C17—H17 | 118.8 |
C6—C7—H7 | 119.4 | C16—C17—H17 | 118.8 |
C2—C7—H7 | 119.4 | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···N2 | 0.82 | 1.82 | 2.547 (8) | 148 |
C15—H15···O2i | 0.93 | 2.35 | 3.275 (11) | 174 |
Symmetry code: (i) x+1, y, z. |