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In the title compound {alternative name: [1-ethyl-3-(2-morpholinoeth­yl)benzimidazolium­yl](phenyl­imino)methane­thiol­ate}, C22H26N4OS, the morpholine ring has a chair conformation. The dihedral angle between the benzimidazole ring system and the phenyl ring is 0.5 (2)°. The crystal structure is stabilized by inter­molecular C—H...O contacts.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805024852/cf6448sup1.cif
Contains datablocks global, 2

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805024852/cf64482sup2.hkl
Contains datablock 2

CCDC reference: 283769

Key indicators

  • Single-crystal X-ray study
  • T = 100 K
  • Mean [sigma](C-C) = 0.007 Å
  • R factor = 0.074
  • wR factor = 0.183
  • Data-to-parameter ratio = 12.6

checkCIF/PLATON results

No syntax errors found



Alert level A REFLT03_ALERT_3_A Reflection count < 85% complete (theta max?) From the CIF: _diffrn_reflns_theta_max 26.00 From the CIF: _diffrn_reflns_theta_full 26.00 From the CIF: _reflns_number_total 3213 TEST2: Reflns within _diffrn_reflns_theta_max Count of symmetry unique reflns 3987 Completeness (_total/calc) 80.59% PLAT022_ALERT_3_A Ratio Unique / Expected Reflections too Low .... 0.81 PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.81
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT340_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 7
Alert level G REFLT03_ALERT_1_G ALERT: Expected hkl max differ from CIF values From the CIF: _diffrn_reflns_theta_max 26.00 From the CIF: _reflns_number_total 3213 From the CIF: _diffrn_reflns_limit_ max hkl 10. 11. 15. From the CIF: _diffrn_reflns_limit_ min hkl -10. -11. -15. TEST1: Expected hkl limits for theta max Calculated maximum hkl 10. 11. 17. Calculated minimum hkl -10. -11. -17.
3 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

[1-ethyl-3-(2-morpholinoethyl)benzimidazolio](phenylimino)methanethiolate top
Crystal data top
C22H26N4OSZ = 2
Mr = 394.54F(000) = 420
Triclinic, P1Dx = 1.289 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9037 (16) ÅCell parameters from 7037 reflections
b = 9.1916 (15) Åθ = 2.5–27.1°
c = 13.950 (2) ŵ = 0.18 mm1
α = 105.927 (12)°T = 100 K
β = 91.443 (13)°Plate, colorless
γ = 110.871 (14)°0.54 × 0.36 × 0.11 mm
V = 1016.2 (3) Å3
Data collection top
Stoe IPDS-II
diffractometer
3213 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus1957 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.000
Detector resolution: 6.67 pixels mm-1θmax = 26.0°, θmin = 2.5°
ω scansh = 1010
Absorption correction: part of the refinement model (ΔF)
(XABS2; Parkin et al., 1968)
k = 1111
Tmin = 0.909, Tmax = 0.980l = 1515
4337 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.183H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.0925P)2]
where P = (Fo2 + 2Fc2)/3
3213 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = 0.27 e Å3
Special details top

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles

Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S10.58227 (14)0.15510 (12)0.20438 (10)0.0398 (4)
O10.2951 (4)0.8174 (4)0.4009 (3)0.0493 (11)
N10.7125 (4)0.3833 (3)0.0430 (3)0.0313 (10)
N20.7508 (4)0.5684 (4)0.1872 (3)0.0350 (11)
N30.9120 (4)0.3331 (4)0.2212 (3)0.0368 (11)
N40.5163 (5)0.6601 (4)0.3321 (3)0.0401 (13)
C10.7293 (5)0.6373 (4)0.1140 (3)0.0342 (13)
C20.7273 (6)0.7916 (5)0.1207 (4)0.0452 (18)
C30.6991 (6)0.8172 (6)0.0295 (4)0.0477 (18)
C40.6711 (6)0.6994 (6)0.0633 (5)0.0517 (19)
C50.6744 (5)0.5462 (5)0.0701 (4)0.0398 (14)
C60.7050 (5)0.5200 (4)0.0202 (3)0.0296 (13)
C70.7010 (5)0.2300 (5)0.0351 (3)0.0367 (15)
C80.8676 (7)0.2447 (6)0.0642 (4)0.0527 (17)
C90.7406 (5)0.4144 (4)0.1401 (3)0.0291 (13)
C100.7594 (5)0.2993 (4)0.1939 (3)0.0308 (11)
C110.9562 (5)0.2461 (4)0.2799 (4)0.0340 (13)
C120.9091 (6)0.2471 (5)0.3732 (4)0.0386 (14)
C130.9691 (6)0.1738 (5)0.4316 (4)0.0412 (16)
C141.0771 (6)0.1011 (5)0.3966 (4)0.0416 (15)
C151.1250 (6)0.1005 (5)0.3035 (4)0.0428 (16)
C161.0639 (6)0.1728 (5)0.2440 (4)0.0404 (16)
C170.7882 (5)0.6482 (5)0.2957 (3)0.0377 (13)
C180.6443 (6)0.6023 (5)0.3525 (4)0.0421 (16)
C190.5701 (6)0.8378 (5)0.3751 (4)0.0440 (15)
C200.4345 (6)0.8926 (5)0.3574 (4)0.0437 (16)
C210.2435 (6)0.6451 (5)0.3607 (4)0.0493 (16)
C220.3738 (7)0.5841 (5)0.3777 (4)0.0489 (16)
H20.74380.87140.18210.054*
H30.69890.91870.03050.057*
H40.64990.72300.12170.062*
H50.65710.46650.13160.048*
H7A0.62790.21070.09400.044*
H7B0.65750.13800.00900.044*
H8A0.90700.33090.09440.079*
H8B0.86040.14350.11140.079*
H8C0.94090.26890.00520.079*
H120.83720.29670.39720.046*
H130.93640.17380.49440.050*
H141.11730.05260.43590.050*
H151.19810.05210.28010.052*
H161.09540.17170.18080.049*
H17A0.83090.76560.30810.045*
H17B0.87270.62040.32210.045*
H18A0.59700.48420.33590.051*
H18B0.68330.64590.42400.051*
H19A0.66210.89090.34440.053*
H19B0.60440.86910.44680.053*
H20A0.47201.01030.38610.052*
H20B0.40430.86580.28560.052*
H21A0.20890.61310.28900.059*
H21B0.15080.59380.39160.059*
H22A0.40440.60970.44930.058*
H22B0.33310.46630.34830.058*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0408 (6)0.0305 (5)0.0475 (8)0.0089 (4)0.0009 (5)0.0175 (4)
O10.055 (2)0.0443 (16)0.049 (2)0.0210 (16)0.0130 (16)0.0113 (15)
N10.0364 (19)0.0242 (15)0.034 (2)0.0122 (15)0.0062 (15)0.0090 (13)
N20.045 (2)0.0239 (15)0.036 (2)0.0138 (16)0.0070 (16)0.0078 (14)
N30.042 (2)0.0323 (16)0.040 (2)0.0139 (16)0.0086 (16)0.0171 (15)
N40.046 (2)0.0273 (16)0.041 (3)0.0128 (17)0.0089 (16)0.0022 (15)
C10.037 (2)0.0277 (18)0.039 (3)0.0112 (18)0.0106 (18)0.0126 (17)
C20.044 (3)0.0264 (18)0.072 (4)0.0167 (19)0.020 (2)0.020 (2)
C30.049 (3)0.040 (2)0.072 (4)0.024 (2)0.022 (2)0.034 (2)
C40.048 (3)0.061 (3)0.076 (4)0.033 (3)0.025 (3)0.049 (3)
C50.038 (2)0.045 (2)0.044 (3)0.017 (2)0.0101 (19)0.023 (2)
C60.035 (2)0.0321 (18)0.031 (3)0.0164 (17)0.0114 (16)0.0184 (16)
C70.049 (3)0.0303 (19)0.030 (3)0.0190 (19)0.0051 (18)0.0025 (16)
C80.059 (3)0.053 (3)0.045 (3)0.030 (3)0.011 (2)0.001 (2)
C90.035 (2)0.0245 (17)0.023 (3)0.0073 (16)0.0012 (15)0.0053 (14)
C100.040 (2)0.0302 (18)0.026 (2)0.0179 (17)0.0094 (17)0.0079 (15)
C110.032 (2)0.0240 (17)0.043 (3)0.0059 (17)0.0006 (18)0.0120 (16)
C120.043 (2)0.038 (2)0.037 (3)0.016 (2)0.0029 (19)0.0141 (18)
C130.056 (3)0.041 (2)0.029 (3)0.017 (2)0.004 (2)0.0164 (18)
C140.043 (3)0.0264 (18)0.047 (3)0.0053 (19)0.011 (2)0.0099 (17)
C150.047 (3)0.037 (2)0.046 (3)0.020 (2)0.003 (2)0.0097 (19)
C160.043 (3)0.040 (2)0.041 (3)0.016 (2)0.0071 (19)0.0161 (19)
C170.044 (2)0.0273 (18)0.034 (3)0.0117 (18)0.0008 (18)0.0000 (16)
C180.049 (3)0.036 (2)0.039 (3)0.018 (2)0.008 (2)0.0051 (18)
C190.047 (3)0.0275 (19)0.049 (3)0.010 (2)0.008 (2)0.0037 (18)
C200.053 (3)0.038 (2)0.044 (3)0.021 (2)0.017 (2)0.0124 (19)
C210.048 (3)0.039 (2)0.045 (3)0.009 (2)0.006 (2)0.002 (2)
C220.058 (3)0.034 (2)0.044 (3)0.007 (2)0.013 (2)0.0087 (19)
Geometric parameters (Å, º) top
S1—C101.701 (4)C19—C201.503 (8)
O1—C201.430 (6)C21—C221.496 (8)
O1—C211.420 (6)C2—H20.930
N1—C61.401 (5)C3—H30.930
N1—C71.494 (6)C4—H40.930
N1—C91.303 (6)C5—H50.930
N2—C11.383 (5)C7—H7A0.970
N2—C91.356 (5)C7—H7B0.970
N2—C171.460 (6)C8—H8A0.960
N3—C101.302 (6)C8—H8B0.960
N3—C111.426 (6)C8—H8C0.960
N4—C181.470 (7)C12—H120.930
N4—C191.465 (6)C13—H130.930
N4—C221.468 (7)C14—H140.930
C1—C21.402 (6)C15—H150.930
C1—C61.402 (6)C16—H160.930
C2—C31.388 (7)C17—H17A0.970
C3—C41.390 (8)C17—H17B0.970
C4—C51.396 (7)C18—H18A0.970
C5—C61.384 (7)C18—H18B0.970
C7—C81.517 (8)C19—H19A0.970
C9—C101.505 (5)C19—H19B0.970
C11—C121.376 (7)C20—H20A0.970
C11—C161.387 (7)C20—H20B0.970
C12—C131.392 (7)C21—H21A0.970
C13—C141.383 (8)C21—H21B0.970
C14—C151.376 (7)C22—H22A0.970
C15—C161.402 (7)C22—H22B0.970
C17—C181.516 (7)
S1···N13.436 (4)C14···H18Bxi3.040
S1···C73.698 (4)C15···H8Bxii3.030
S1···C123.397 (6)C15···H22Bvi3.080
S1···C20i3.580 (5)C16···H2i3.080
S1···C7ii3.636 (5)C16···H22Bvi2.860
S1···H7B3.040C17···H23.030
S1···H123.120C17···H19A2.770
S1···H20Ai3.190C19···H17A2.750
S1···H20Bi3.100H2···C16viii3.080
S1···H18A3.030H2···C173.030
S1···H4iii3.020H2···H17A2.460
S1···H7Aii3.120H2···H19A2.370
O1···N42.873 (6)H3···H7Bviii2.370
O1···C13iv3.363 (7)H4···S1iii3.020
O1···H13iv2.570H4···H16vii2.390
O1···H19Bv2.890H5···C72.980
N1···S13.436 (4)H5···H7A2.470
N1···N22.175 (5)H5···N4iii2.880
N1···N33.246 (5)H5···H21Aiii2.580
N1···C3iii3.439 (7)H7A···C52.880
N1···C4iii3.262 (7)H7A···H52.470
N2···N12.175 (5)H7A···S1ii3.120
N2···N33.115 (5)H7A···C3iii3.010
N2···N43.112 (6)H7A···H20Biii2.550
N3···N13.246 (5)H7B···S13.040
N3···N23.115 (5)H7B···C102.760
N3···C173.371 (6)H7B···H3i2.370
N3···C21vi3.367 (6)H8B···C15xii3.030
N4···N23.112 (6)H8B···H15xii2.450
N4···O12.873 (6)H8C···C93.080
N3···H21Avi2.860H12···S13.120
N3···H17B2.780H12···C102.910
N4···H5iii2.880H13···O1iv2.570
C1···C5iii3.338 (7)H13···H14x2.440
C1···C8vii3.508 (8)H14···C13x3.060
C3···N1iii3.439 (7)H14···H13x2.440
C3···C7iii3.438 (7)H15···H8Bxii2.450
C4···C9iii3.483 (7)H16···C4vii2.810
C4···N1iii3.262 (7)H16···H4vii2.390
C4···C6iii3.405 (7)H17A···C22.850
C5···C6iii3.340 (7)H17A···C14viii2.970
C5···C1iii3.338 (7)H17A···C192.750
C6···C6iii3.550 (7)H17A···H22.460
C6···C4iii3.405 (7)H17A···H19A2.190
C6···C8vii3.581 (8)H17B···N32.780
C6···C5iii3.340 (7)H17B···C102.800
C7···S13.698 (4)H18A···S13.030
C7···S1ii3.636 (5)H18A···C93.050
C7···C3iii3.438 (7)H18A···C102.990
C8···C6vii3.581 (8)H18A···H22B2.310
C8···C1vii3.508 (8)H18B···H19B2.340
C9···C4iii3.483 (7)H18B···H22A2.430
C10···C183.531 (7)H18B···C14xi3.040
C11···C21vi3.488 (6)H19A···C13viii2.960
C12···S13.397 (6)H19A···C172.770
C13···O1iv3.363 (7)H19A···H22.370
C17···N33.371 (6)H19A···H17A2.190
C18···C103.531 (7)H19B···H18B2.340
C20···S1viii3.580 (5)H19B···H22A2.430
C21···N3ix3.367 (6)H19B···O1v2.890
C21···C11ix3.488 (6)H19B···H20Av2.510
C2···H17A2.850H20A···S1viii3.190
C3···H7Aiii3.010H20A···H19Bv2.510
C4···H16vii2.810H20B···S1viii3.100
C5···H7A2.880H20B···H21A2.370
C7···H52.980H20B···H7Aiii2.550
C9···H18A3.050H21A···N3ix2.860
C9···H8C3.080H21A···H20B2.370
C10···H7B2.760H21A···H5iii2.580
C10···H122.910H21B···C11ix2.970
C10···H18A2.990H21B···C12ix3.080
C10···H17B2.800H22A···H18B2.430
C11···H21Bvi2.970H22A···H19B2.430
C12···H21Bvi3.080H22B···C15ix3.080
C13···H14x3.060H22B···C16ix2.860
C13···H19Ai2.960H22B···H18A2.310
C14···H17Ai2.970
C20—O1—C21108.9 (4)N1—C7—H7B110.0
C6—N1—C7123.5 (4)C8—C7—H7A110.0
C6—N1—C9110.2 (3)C8—C7—H7B110.0
C7—N1—C9126.2 (3)H7A—C7—H7B108.0
C1—N2—C9107.8 (4)C7—C8—H8A110.0
C1—N2—C17126.9 (4)C7—C8—H8B109.0
C9—N2—C17125.2 (4)C7—C8—H8C109.0
C10—N3—C11119.8 (4)H8A—C8—H8B109.0
C18—N4—C19111.4 (4)H8A—C8—H8C109.0
C18—N4—C22109.3 (4)H8B—C8—H8C109.0
C19—N4—C22108.1 (4)C11—C12—H12120.0
N2—C1—C2131.6 (4)C13—C12—H12120.0
N2—C1—C6107.5 (3)C12—C13—H13120.0
C2—C1—C6120.9 (4)C14—C13—H13120.0
C1—C2—C3115.5 (5)C13—C14—H14120.0
C2—C3—C4123.6 (5)C15—C14—H14120.0
C3—C4—C5121.0 (6)C14—C15—H15120.0
C4—C5—C6116.0 (5)C16—C15—H15120.0
N1—C6—C1104.7 (3)C11—C16—H16120.0
N1—C6—C5132.1 (4)C15—C16—H16120.0
C1—C6—C5123.1 (4)N2—C17—H17A109.0
N1—C7—C8109.9 (4)N2—C17—H17B109.0
N1—C9—N2109.7 (3)C18—C17—H17A109.0
N1—C9—C10126.2 (3)C18—C17—H17B109.0
N2—C9—C10124.1 (4)H17A—C17—H17B108.0
S1—C10—N3134.3 (3)N4—C18—H18A109.0
S1—C10—C9114.9 (3)N4—C18—H18B109.0
N3—C10—C9110.8 (4)C17—C18—H18A108.0
N3—C11—C12122.4 (4)C17—C18—H18B108.0
N3—C11—C16117.1 (4)H18A—C18—H18B107.0
C12—C11—C16120.2 (4)N4—C19—H19A110.0
C11—C12—C13120.0 (5)N4—C19—H19B110.0
C12—C13—C14120.3 (5)C20—C19—H19A110.0
C13—C14—C15119.9 (5)C20—C19—H19B110.0
C14—C15—C16120.1 (5)H19A—C19—H19B108.0
C11—C16—C15119.6 (5)O1—C20—H20A109.0
N2—C17—C18114.2 (4)O1—C20—H20B109.0
N4—C18—C17115.2 (4)C19—C20—H20A109.0
N4—C19—C20110.2 (4)C19—C20—H20B109.0
O1—C20—C19112.0 (4)H20A—C20—H20B108.0
O1—C21—C22112.7 (4)O1—C21—H21A109.0
N4—C22—C21110.3 (4)O1—C21—H21B109.0
C1—C2—H2122.0C22—C21—H21A109.0
C3—C2—H2122.0C22—C21—H21B109.0
C2—C3—H3118.0H21A—C21—H21B108.0
C4—C3—H3118.0N4—C22—H22A110.0
C3—C4—H4120.0N4—C22—H22B110.0
C5—C4—H4120.0C21—C22—H22A110.0
C4—C5—H5122.0C21—C22—H22B110.0
C6—C5—H5122.0H22A—C22—H22B108.0
N1—C7—H7A110.0
C21—O1—C20—C1957.2 (5)C18—N4—C22—C21178.2 (4)
C20—O1—C21—C2257.2 (5)C18—N4—C19—C20177.3 (4)
C6—N1—C9—N21.0 (5)C19—N4—C18—C1770.4 (5)
C7—N1—C6—C1176.9 (4)N2—C1—C6—C5178.0 (4)
C9—N1—C7—C888.9 (5)C2—C1—C6—C51.5 (7)
C7—N1—C9—C103.1 (7)C2—C1—C6—N1179.1 (4)
C7—N1—C6—C55.8 (8)N2—C1—C6—N10.4 (5)
C9—N1—C6—C5178.1 (5)C6—C1—C2—C30.4 (7)
C6—N1—C7—C886.5 (5)N2—C1—C2—C3178.9 (5)
C9—N1—C6—C10.8 (5)C1—C2—C3—C41.3 (8)
C6—N1—C9—C10179.1 (4)C2—C3—C4—C51.9 (9)
C7—N1—C9—N2176.9 (4)C3—C4—C5—C60.7 (8)
C9—N2—C1—C2179.5 (5)C4—C5—C6—C10.9 (7)
C17—N2—C9—C102.8 (7)C4—C5—C6—N1177.8 (5)
C17—N2—C9—N1177.2 (4)N1—C9—C10—N3100.3 (5)
C1—N2—C9—C10179.3 (4)N2—C9—C10—S1101.1 (4)
C1—N2—C17—C18102.9 (5)N2—C9—C10—N379.8 (5)
C9—N2—C1—C60.2 (5)N1—C9—C10—S178.9 (5)
C9—N2—C17—C1881.3 (5)N3—C11—C16—C15173.3 (4)
C17—N2—C1—C6176.6 (4)C12—C11—C16—C150.3 (7)
C1—N2—C9—N10.7 (5)N3—C11—C12—C13173.5 (4)
C17—N2—C1—C24.1 (8)C16—C11—C12—C130.3 (7)
C10—N3—C11—C1259.8 (6)C11—C12—C13—C140.6 (7)
C11—N3—C10—S15.7 (7)C12—C13—C14—C150.3 (8)
C10—N3—C11—C16126.8 (5)C13—C14—C15—C160.3 (8)
C11—N3—C10—C9175.4 (4)C14—C15—C16—C110.6 (7)
C22—N4—C19—C2057.3 (5)N2—C17—C18—N467.5 (5)
C19—N4—C22—C2156.9 (5)N4—C19—C20—O159.0 (5)
C22—N4—C18—C17170.3 (4)O1—C21—C22—N458.6 (6)
Symmetry codes: (i) x, y1, z; (ii) x+1, y, z; (iii) x+1, y+1, z; (iv) x+1, y+1, z+1; (v) x+1, y+2, z+1; (vi) x+1, y, z; (vii) x+2, y+1, z; (viii) x, y+1, z; (ix) x1, y, z; (x) x+2, y, z+1; (xi) x+2, y+1, z+1; (xii) x+2, y, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C13—H13···O1iv0.932.573.363 (7)144
Symmetry code: (iv) x+1, y+1, z+1.
 

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