Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805029703/ci6655sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536805029703/ci6655Isup2.hkl |
CCDC reference: 287530
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.042
- wR factor = 0.113
- Data-to-parameter ratio = 14.8
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_C Check the Reported _diffrn_ambient_temperature . 293 K PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C10 PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 1
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 5 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion
Succinic anhydride (1.0 g, 0.01 mol) was added to methyl anthraanilate (0.5 g, 0.003 mol) in a round-bottomed flask containing dry toluene (50 ml). The reaction mixture was then refluxed for 15 h using a Dean–Stark trap. The reaction mixture was quickly filtered and left for crystallization at room temperature, to obtain colourless crystals of compound (I) (1.01 g, yield 85%, m.p. 539–540 K).
Atom H1O5 was located in a difference Fourier map and refined isotropically. All other H atoms were positioned geometrically and allowed to ride on their parent atoms, with N—H = 0.86 Å and C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2 or 1.5Ueq(C,N). A rotating-group model was used for the methyl group.
Data collection: SMART (Siemens, 1997); cell refinement: SAINT (Siemens, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 1997); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).
C12H13NO5 | F(000) = 1056 |
Mr = 251.23 | Dx = 1.376 Mg m−3 |
Monoclinic, C2/c | Melting point: 397-399K K |
Hall symbol: -C 2yc | Mo Kα radiation, λ = 0.71073 Å |
a = 18.301 (2) Å | Cell parameters from 5412 reflections |
b = 12.1788 (15) Å | θ = 2.0–26.5° |
c = 10.8967 (14) Å | µ = 0.11 mm−1 |
β = 93.001 (2)° | T = 293 K |
V = 2425.3 (5) Å3 | Block, colourless |
Z = 8 | 0.42 × 0.27 × 0.24 mm |
Siemens SMART CCD area-detector diffractometer | 2498 independent reflections |
Radiation source: fine-focus sealed tube | 2230 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
Detector resolution: 8.33 pixels mm-1 | θmax = 26.5°, θmin = 2.0° |
ω scans | h = −22→22 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −15→14 |
Tmin = 0.956, Tmax = 0.975 | l = −12→13 |
6736 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.113 | w = 1/[σ2(Fo2) + (0.0551P)2 + 1.0027P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
2498 reflections | Δρmax = 0.20 e Å−3 |
169 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0070 (10) |
C12H13NO5 | V = 2425.3 (5) Å3 |
Mr = 251.23 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 18.301 (2) Å | µ = 0.11 mm−1 |
b = 12.1788 (15) Å | T = 293 K |
c = 10.8967 (14) Å | 0.42 × 0.27 × 0.24 mm |
β = 93.001 (2)° |
Siemens SMART CCD area-detector diffractometer | 2498 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2230 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.975 | Rint = 0.019 |
6736 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.20 e Å−3 |
2498 reflections | Δρmin = −0.17 e Å−3 |
169 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.07221 (6) | 0.13681 (9) | 0.38233 (10) | 0.0698 (3) | |
O2 | 0.13261 (8) | 0.17696 (9) | 0.21797 (12) | 0.0851 (4) | |
O3 | 0.26540 (7) | −0.09981 (9) | −0.00945 (12) | 0.0803 (4) | |
O4 | 0.42082 (5) | 0.04780 (10) | 0.03564 (9) | 0.0647 (3) | |
O5 | 0.44972 (6) | −0.00629 (11) | −0.14972 (10) | 0.0679 (3) | |
N1 | 0.20032 (7) | 0.01423 (9) | 0.10851 (10) | 0.0514 (3) | |
H1N | 0.1925 | 0.0830 | 0.1203 | 0.062* | |
C1 | 0.11698 (7) | −0.01165 (11) | 0.27169 (13) | 0.0498 (3) | |
C2 | 0.08014 (8) | −0.08239 (14) | 0.34819 (15) | 0.0613 (4) | |
H2 | 0.0505 | −0.0532 | 0.4068 | 0.074* | |
C3 | 0.08703 (9) | −0.19425 (14) | 0.33833 (17) | 0.0681 (4) | |
H3 | 0.0621 | −0.2404 | 0.3897 | 0.082* | |
C4 | 0.13086 (9) | −0.23748 (13) | 0.25248 (16) | 0.0649 (4) | |
H4 | 0.1352 | −0.3133 | 0.2461 | 0.078* | |
C5 | 0.16877 (9) | −0.17094 (12) | 0.17519 (13) | 0.0569 (4) | |
H5 | 0.1986 | −0.2019 | 0.1179 | 0.068* | |
C6 | 0.16216 (7) | −0.05669 (11) | 0.18342 (12) | 0.0474 (3) | |
C7 | 0.24768 (7) | −0.00845 (11) | 0.02023 (12) | 0.0478 (3) | |
C8 | 0.27596 (7) | 0.09339 (11) | −0.04048 (12) | 0.0473 (3) | |
H8A | 0.2972 | 0.1421 | 0.0222 | 0.057* | |
H8B | 0.2353 | 0.1315 | −0.0823 | 0.057* | |
C9 | 0.33291 (7) | 0.06764 (12) | −0.13204 (12) | 0.0507 (3) | |
H9A | 0.3150 | 0.0086 | −0.1853 | 0.061* | |
H9B | 0.3398 | 0.1318 | −0.1829 | 0.061* | |
C10 | 0.40495 (7) | 0.03491 (10) | −0.07268 (12) | 0.0451 (3) | |
C11 | 0.10887 (8) | 0.10874 (12) | 0.28557 (13) | 0.0558 (4) | |
C12 | 0.06633 (12) | 0.25315 (15) | 0.40603 (17) | 0.0822 (6) | |
H12A | 0.0422 | 0.2643 | 0.4812 | 0.123* | |
H12B | 0.0385 | 0.2875 | 0.3395 | 0.123* | |
H12C | 0.1144 | 0.2849 | 0.4131 | 0.123* | |
H1O5 | 0.4900 (13) | −0.0210 (17) | −0.107 (2) | 0.094 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0760 (7) | 0.0660 (7) | 0.0697 (7) | 0.0113 (5) | 0.0266 (6) | 0.0017 (5) |
O2 | 0.1269 (11) | 0.0472 (6) | 0.0861 (8) | 0.0148 (6) | 0.0528 (8) | 0.0094 (6) |
O3 | 0.0983 (9) | 0.0442 (6) | 0.1023 (9) | 0.0075 (6) | 0.0432 (7) | −0.0041 (6) |
O4 | 0.0512 (6) | 0.0870 (8) | 0.0558 (6) | 0.0166 (5) | 0.0005 (4) | −0.0161 (5) |
O5 | 0.0473 (6) | 0.0996 (9) | 0.0575 (6) | 0.0100 (5) | 0.0081 (5) | −0.0179 (6) |
N1 | 0.0626 (7) | 0.0394 (6) | 0.0530 (6) | 0.0041 (5) | 0.0121 (5) | 0.0015 (5) |
C1 | 0.0458 (7) | 0.0500 (7) | 0.0533 (7) | 0.0001 (5) | 0.0012 (6) | 0.0062 (6) |
C2 | 0.0496 (8) | 0.0666 (9) | 0.0681 (9) | −0.0035 (7) | 0.0081 (7) | 0.0119 (7) |
C3 | 0.0617 (9) | 0.0616 (9) | 0.0809 (11) | −0.0166 (7) | 0.0034 (8) | 0.0177 (8) |
C4 | 0.0759 (10) | 0.0441 (7) | 0.0732 (10) | −0.0145 (7) | −0.0100 (8) | 0.0049 (7) |
C5 | 0.0687 (9) | 0.0451 (7) | 0.0562 (8) | −0.0036 (6) | −0.0037 (6) | −0.0024 (6) |
C6 | 0.0495 (7) | 0.0447 (7) | 0.0474 (7) | −0.0024 (5) | −0.0033 (5) | 0.0030 (5) |
C7 | 0.0473 (7) | 0.0442 (7) | 0.0517 (7) | 0.0051 (5) | 0.0012 (5) | −0.0013 (5) |
C8 | 0.0438 (6) | 0.0445 (7) | 0.0536 (7) | 0.0058 (5) | 0.0012 (5) | 0.0013 (5) |
C9 | 0.0517 (7) | 0.0510 (7) | 0.0495 (7) | 0.0034 (6) | 0.0042 (6) | 0.0039 (6) |
C10 | 0.0445 (7) | 0.0403 (6) | 0.0512 (7) | −0.0029 (5) | 0.0085 (5) | −0.0036 (5) |
C11 | 0.0558 (8) | 0.0563 (8) | 0.0561 (8) | 0.0087 (6) | 0.0106 (6) | 0.0052 (6) |
C12 | 0.1029 (14) | 0.0695 (11) | 0.0762 (11) | 0.0241 (10) | 0.0242 (10) | −0.0058 (9) |
O1—C11 | 1.3240 (18) | C3—H3 | 0.93 |
O1—C12 | 1.445 (2) | C4—C5 | 1.381 (2) |
O2—C11 | 1.2063 (18) | C4—H4 | 0.93 |
O3—C7 | 1.2078 (17) | C5—C6 | 1.3999 (19) |
O4—C10 | 1.2110 (16) | C5—H5 | 0.93 |
O5—C10 | 1.3037 (16) | C7—C8 | 1.5099 (19) |
O5—H1O5 | 0.87 (2) | C8—C9 | 1.5129 (18) |
N1—C7 | 1.3566 (17) | C8—H8A | 0.97 |
N1—C6 | 1.3999 (17) | C8—H8B | 0.97 |
N1—H1N | 0.86 | C9—C10 | 1.4921 (19) |
C1—C2 | 1.397 (2) | C9—H9A | 0.97 |
C1—C6 | 1.4117 (19) | C9—H9B | 0.97 |
C1—C11 | 1.482 (2) | C12—H12A | 0.96 |
C2—C3 | 1.373 (2) | C12—H12B | 0.96 |
C2—H2 | 0.93 | C12—H12C | 0.96 |
C3—C4 | 1.369 (2) | ||
C11—O1—C12 | 116.17 (13) | N1—C7—C8 | 112.94 (11) |
C10—O5—H1O5 | 105.8 (14) | C7—C8—C9 | 112.48 (11) |
C7—N1—C6 | 130.13 (11) | C7—C8—H8A | 109.1 |
C7—N1—H1N | 114.9 | C9—C8—H8A | 109.1 |
C6—N1—H1N | 114.9 | C7—C8—H8B | 109.1 |
C2—C1—C6 | 119.03 (14) | C9—C8—H8B | 109.1 |
C2—C1—C11 | 119.69 (13) | H8A—C8—H8B | 107.8 |
C6—C1—C11 | 121.28 (12) | C10—C9—C8 | 113.15 (11) |
C3—C2—C1 | 121.08 (15) | C10—C9—H9A | 108.9 |
C3—C2—H2 | 119.5 | C8—C9—H9A | 108.9 |
C1—C2—H2 | 119.5 | C10—C9—H9B | 108.9 |
C4—C3—C2 | 119.64 (15) | C8—C9—H9B | 108.9 |
C4—C3—H3 | 120.2 | H9A—C9—H9B | 107.8 |
C2—C3—H3 | 120.2 | O4—C10—O5 | 123.42 (13) |
C3—C4—C5 | 121.45 (15) | O4—C10—C9 | 123.32 (12) |
C3—C4—H4 | 119.3 | O5—C10—C9 | 113.24 (12) |
C5—C4—H4 | 119.3 | O2—C11—O1 | 121.47 (14) |
C4—C5—C6 | 119.75 (15) | O2—C11—C1 | 125.30 (13) |
C4—C5—H5 | 120.1 | O1—C11—C1 | 113.23 (12) |
C6—C5—H5 | 120.1 | O1—C12—H12A | 109.5 |
C5—C6—N1 | 121.91 (13) | O1—C12—H12B | 109.5 |
C5—C6—C1 | 119.04 (13) | H12A—C12—H12B | 109.5 |
N1—C6—C1 | 119.04 (12) | O1—C12—H12C | 109.5 |
O3—C7—N1 | 124.61 (13) | H12A—C12—H12C | 109.5 |
O3—C7—C8 | 122.44 (12) | H12B—C12—H12C | 109.5 |
C6—C1—C2—C3 | −0.3 (2) | C6—N1—C7—O3 | 0.1 (2) |
C11—C1—C2—C3 | −179.44 (14) | C6—N1—C7—C8 | 179.10 (13) |
C1—C2—C3—C4 | 0.2 (2) | O3—C7—C8—C9 | −5.2 (2) |
C2—C3—C4—C5 | 0.2 (2) | N1—C7—C8—C9 | 175.77 (11) |
C3—C4—C5—C6 | −0.5 (2) | C7—C8—C9—C10 | −73.29 (15) |
C4—C5—C6—N1 | 178.98 (13) | C8—C9—C10—O4 | −13.44 (19) |
C4—C5—C6—C1 | 0.4 (2) | C8—C9—C10—O5 | 168.23 (12) |
C7—N1—C6—C5 | −0.2 (2) | C12—O1—C11—O2 | −3.6 (2) |
C7—N1—C6—C1 | 178.34 (13) | C12—O1—C11—C1 | 176.13 (14) |
C2—C1—C6—C5 | 0.0 (2) | C2—C1—C11—O2 | −172.99 (17) |
C11—C1—C6—C5 | 179.10 (13) | C6—C1—C11—O2 | 7.9 (2) |
C2—C1—C6—N1 | −178.64 (13) | C2—C1—C11—O1 | 7.3 (2) |
C11—C1—C6—N1 | 0.50 (19) | C6—C1—C11—O1 | −171.88 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2 | 0.86 | 1.94 | 2.6534 (17) | 139 |
O5—H1O5···O4i | 0.87 (2) | 1.80 (2) | 2.6657 (15) | 173 (2) |
C2—H2···O1 | 0.93 | 2.36 | 2.700 (2) | 101 |
C5—H5···O3 | 0.93 | 2.27 | 2.881 (2) | 123 |
C9—H9B···O2ii | 0.97 | 2.42 | 3.3184 (19) | 154 |
C8—H8B···Cg1iii | 0.97 | 2.58 | 3.4470 (15) | 149 |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+1/2, −y+1/2, −z; (iii) x, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H13NO5 |
Mr | 251.23 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 18.301 (2), 12.1788 (15), 10.8967 (14) |
β (°) | 93.001 (2) |
V (Å3) | 2425.3 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.42 × 0.27 × 0.24 |
Data collection | |
Diffractometer | Siemens SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.956, 0.975 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6736, 2498, 2230 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.113, 1.04 |
No. of reflections | 2498 |
No. of parameters | 169 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.17 |
Computer programs: SMART (Siemens, 1997), SAINT (Siemens, 1997), SAINT, SHELXTL (Sheldrick, 1997), SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O2 | 0.86 | 1.94 | 2.6534 (17) | 139 |
O5—H1O5···O4i | 0.87 (2) | 1.80 (2) | 2.6657 (15) | 173 (2) |
C2—H2···O1 | 0.93 | 2.36 | 2.700 (2) | 101 |
C5—H5···O3 | 0.93 | 2.27 | 2.881 (2) | 123 |
C9—H9B···O2ii | 0.97 | 2.42 | 3.3184 (19) | 154 |
C8—H8B···Cg1iii | 0.97 | 2.58 | 3.4470 (15) | 149 |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+1/2, −y+1/2, −z; (iii) x, −y, z−1/2. |
Methyl(2-methoxycarbonyl)succinate, a natural aromatic amide isolated from the methanolic extract of Jolyna laminarioides, has shown potent chymotrypsin inhibitory activity (Atta-ur-Rahman et al., 1997). Therefore, we have synthesized our desired analogue, (I), in 85% yield, by a one-step condensation of methyl anthraanilate and succinic anhydride (see scheme). We report here the structure of (I).
Molecules of the title compound, (I), have normal bond lengths (Allen et al., 1987). The C6—N1—C7 bond angle [130.13 (11)°] is larger compared with the value of 126.69 (10)° observed in N,N'-diphenylsuccinimide (Anjum et al., 2005). The N1—C7 and C8—C9 bonds are trans with respect to the C7—C8 bond for steric reasons, the N1—C7—C8—C9 torsion angle being 175.77 (11)°.
The phenylacetamide moiety is planar to within ±0.018 (1) Å. The C9—C10—O4—O5 and C11—C12—O1—O2 planes form dihedral angles of 80.47 (5) and 9.38 (9)°, respectively, with the phenylacetamide moiety. This orientation is influenced by intramolecular C—H···O and N—H···O interactions, namely N1—H1N···O2, C5—H5···O3 and C2—H2···O1 (Table 1). As seen in Fig. 1, each of these interactions generates rings of graph-set motif S(5) or S(6) (Bernstein et al., 1995).
In the crystal structure, centrosymmetrically related molecules are linked by O5—H1O5···O4i intermolecular hydrogen bonds to form a dimeric pair (symmetry code as in Table 1). These hydrogen bonds form an R22(8) ring motif. The adjacent dimers are interlinked by mutual C9—H9B···O2ii hydrogen bonds to form a chain along [110]. These hydrogen bonds form an R22(18) ring motif (Fig. 2). A C—H···π interaction involving atom H8B and the C1–C6 ring is observed, with atom H8B separated from the centroid (Cg1) of the ring by 2.58 Å (Table 1).