Download citation
Download citation
link to html
The inositol derivative 1D-1,2-diazido-1,2-dide­oxy-3,4,5,6-tetra-O-benzyl-myo-inositol diethyl ether 0.6-solvate, C34H34N6O4·0.6C4H10O, packs with weak and unusual C—H...N,O hydrogen bonds and C—H...π inter­actions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536805041486/tk6297sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536805041486/tk6297Isup2.hkl
Contains datablock I

CCDC reference: 296690

Key indicators

  • Single-crystal X-ray study
  • T = 88 K
  • Mean [sigma](C-C) = 0.016 Å
  • Disorder in solvent or counterion
  • R factor = 0.053
  • wR factor = 0.127
  • Data-to-parameter ratio = 9.3

checkCIF/PLATON results

No syntax errors found



Alert level A RINTA01_ALERT_3_A The value of Rint is greater than 0.20 Rint given 0.328
Author Response: ... Reflections were affected by surface powder diffraction. Subsequent downweighting was applied by the processing program.
PLAT020_ALERT_3_A The value of Rint is greater than 0.10 .........       0.33
Author Response: ... Reflections were affected by surface powder diffraction. Subsequent downweighting was applied by the processing program.
PLAT026_ALERT_3_A Ratio Observed / Unique Reflections too Low ....         22 Perc.
Author Response: ... The best crystals that could be obtained diffracted weakly, consistent with maximum size and occluded partial disordered solvent.
PLAT093_ALERT_1_A No su's on H-atoms, but refinement reported as .      mixed
PLAT432_ALERT_2_A Short Inter X...Y Contact  C33    ..  C61     ..       2.65 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.
PLAT432_ALERT_2_A Short Inter X...Y Contact  C34    ..  C61     ..       2.65 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.
PLAT432_ALERT_2_A Short Inter X...Y Contact  C55    ..  C61     ..       2.15 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.
PLAT432_ALERT_2_A Short Inter X...Y Contact  C57    ..  C61     ..       2.14 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.

Alert level B ABSTM02_ALERT_3_B The ratio of expected to reported Tmax/Tmin(RR') is < 0.75 Tmin and Tmax reported: 0.597 0.986 Tmin(prime) and Tmax expected: 0.960 0.986 RR(prime) = 0.622 Please check that your absorption correction is appropriate. PLAT061_ALERT_3_B Tmax/Tmin Range Test RR' too Large ............. 0.62 PLAT201_ALERT_2_B Isotropic non-H Atoms in Main Residue(s) ....... 2 PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C30 PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C40 PLAT340_ALERT_3_B Low Bond Precision on C-C bonds (x 1000) Ang ... 16 PLAT432_ALERT_2_B Short Inter X...Y Contact C25 .. C61 .. 2.97 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.
PLAT432_ALERT_2_B Short Inter X...Y Contact  C51    ..  C61     ..       2.95 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.
PLAT432_ALERT_2_B Short Inter X...Y Contact  C52    ..  C61     ..       3.08 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.

Alert level C ABSMU01_ALERT_1_C The ratio of given/expected absorption coefficient lies outside the range 0.99 <> 1.01 Calculated value of mu = 0.082 Value of mu given = 0.081 GOODF01_ALERT_2_C The least squares goodness of fit parameter lies outside the range 0.80 <> 2.00 Goodness of fit given = 0.770 PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ? PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ? PLAT202_ALERT_3_C Isotropic non-H Atoms in Anion/Solvent ......... 5 PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.52 Ratio PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C20 PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C33 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for O2 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for O3 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for O4 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C31 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C41 PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 51.00 Perc. PLAT432_ALERT_2_C Short Inter X...Y Contact C26 .. C60 .. 3.17 Ang.
Author Response: ... These atoms are part of the model for coping with the disordered diethyl solvent; no physical significance should be attached to their relative positions.
PLAT480_ALERT_4_C Long H...A H-Bond Reported H14    ..  N3      ..       2.70 Ang.
PLAT480_ALERT_4_C Long H...A H-Bond Reported H20B   ..  N3      ..       2.65 Ang.
PLAT764_ALERT_4_C Overcomplete CIF Bond List Detected (Rep/Expd) .       1.24 Ratio

Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 26.40 From the CIF: _reflns_number_total 4038 Count of symmetry unique reflns 4050 Completeness (_total/calc) 99.70% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no
8 ALERT level A = In general: serious problem 9 ALERT level B = Potentially serious problem 19 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 20 ALERT type 2 Indicator that the structure model may be wrong or deficient 7 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion

Comment top

The title compound, (I), was prepared as part of a programme aimed at generating new hydrogenation catalyst ligands from inositol molecules (Gainsford et al., 2000; Falshaw et al., 1999).

The asymmetric unit of (I) contains one independent molecule, as shown in Fig. 1. The absolute configuration shown is that determined from the chemical synthesis route. There are few cyclohexane structures in the Cambridge Structural Database (CSD, Version?; Allen, 2002) with adjacent azide and O substituents, namely CSD refcodes QAPSAB and QAPSEF (Akai, Nakamura et al., 1999; Akai, Sugita et al., 1999), AZUZAW (Busscher et al., 2004) and IXEVAI (Carballido et al., 2004). The azide angular geometries C1—N1—N2 and N1—N2—N3 in (I) fall within the previously observed ranges of 114–119° and 170–174°, respectively. The cyclohexane ring adopts a chair conformation, with puckering parameters (Cremer & Pople, 1975) Q = 0.573 (9) Å, θ = 2.6 (9)° and ϕ = 347 (20)°.

Normally, inositol derivatives are strongly hydrogen-bonded, utilizing all available bound groups, e.g. O—H···O (GEGWIY; Dietrich et al., 1999) and C—H···OC (HADKIG; Steiner et al., 1993). Although the crystals of (I) were weakly diffracting, the crystal packing stability has again been assisted by definite, though weak, non-classical hydrogen bonding involving C—H···X (where X is O or Nazide) and C—H···π interactions, as detailed in Table 2. These forces are sufficient to stabilize a partial molecule of the crystallizing solvent diethyl ether in the lattice (estimated as 0.6 of a molecule).

There are two types of C—H···Nazide interactions in the structure of (I). One was unexpected, being to the inositol ring-bound atom N4, while the other two were to the terminal azide atom N3. The former have rarely been observed, according to a CSD search, with only one occurrence noted in SUMRAT (Goulaouic et al., 1993), with H···N = 2.67 Å and C—H···N = 131°. There are currently five instances of C—H···Nterminal interactions. Three examples are ZDGPLN (Schmidt et al., 1980), MIYKIO (Barnes et al., 2002) and YASBAW (Humphreys et al., 2005) with H···N values of 2.62, 2.59 and 2.47 Å, respectively, and C—H···N angles of 127, 146 and 161°, respectively. In the last of these structures, the interaction was apparently insufficient to reduce the disorder found in the azide group.

The C—H···π interactions listed in Table 2 fit within the normal applied H···Cg limit of 3 Å. From the interaction distances, it seems highly likely that there is also a C—H···O hydrogen bond to the disordered diethyl ether solvent, with C26—H26···O(C60) = 2.49 Å, C26···O = 3.17 (9) Å and C—H···O = 138°.

The combined weak interactions give three-dimensional stability to the crystal structure, although it is difficult to show this meaningfully in a packing diagram. Instead, Fig. 2 (Mercury; Bruno et al., 2002), shows the full interaction commitments of all the bound groups to the inositol as dotted bonds, with the disordered solvent molecules represented by one atom, O(C60) (see Experimental).

Experimental top

1D-3,4,5,6-Tetra-O-benzy-myo-inositol was treated with methanesulfonyl chloride in pyridine overnight at room temperature to give the 1,2-dimesylate, which was then subjected to a displacement reaction using sodium azide in dimethylformamide overnight at 383 K. [Please give brief details of quantities] Crystals of the title compound were isolated from diethyl ether.

Refinement top

All non-H atoms except C23 and C24 were refined with anisotropic displacement parameters. Friedel-related reflections were merged. The H atoms of the amino (N1) and hydroxyl (O1) atoms were positionally refined. All C-bound H atoms were constrained to their expected geometries, with CH(methyl) = 0.98 Å and the remaining C—H = 1.0 Å. For all H atoms, Uiso(H) = 1.2Ueq(parent atom). The disordered diethyl ether was modelled with density at 11 atomic sites using C atoms only and a common Uiso; no extra O or H atoms were included for the ether solvate. Models of diethyl ether in two main orientations fit on these positions, but no rational model could be constructed. On the basis of the total electron density, about 0.62 of a diethyl ether molecule per asymmetric unit was found.

Computing details top

Data collection: SMART (Siemens, 1996); cell refinement: SMART; data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I), with displacement ellipsoids drawn at the 50% probability level.
[Figure 2] Fig. 2. Intermolecular interactions (dotted lines) in (I). Contact atoms are shown as spheres. See text for discussion of O(C60). [Symmetry codes are as given in Table 2; additionally: (iv) 3/2 − x, 1 − y, −1/2 + z].
1D-1,2-diazido-1,2-dideoxy-3,4,5,6-tetra-O-benzyl-myo-inositol diethyl ether 0.6-solvate top
Crystal data top
C34H34N6O4·0.6C4H10OF(000) = 1356
Mr = 655.53Dx = 1.241 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 895 reflections
a = 9.006 (3) Åθ = 2.6–14.6°
b = 15.324 (6) ŵ = 0.08 mm1
c = 25.424 (11) ÅT = 88 K
V = 3509 (2) Å3Needle, colourless
Z = 40.50 × 0.22 × 0.18 mm
Data collection top
Bruker SMART CCD area-detector
diffractometer
4038 independent reflections
Radiation source: fine-focus sealed tube908 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.328
Detector resolution: 8.192 pixels mm-1θmax = 26.4°, θmin = 2.1°
ϕ and ω scansh = 1011
Absorption correction: multi-scan
(SADABS; Blessing, 1995; Sheldrick, 1996)
k = 1919
Tmin = 0.597, Tmax = 0.986l = 3128
19603 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 0.77 w = 1/[σ2(Fo2) + (0.0367P)2]
where P = (Fo2 + 2Fc2)/3
4038 reflections(Δ/σ)max = 0.001
432 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = 0.20 e Å3
Crystal data top
C34H34N6O4·0.6C4H10OV = 3509 (2) Å3
Mr = 655.53Z = 4
Orthorhombic, P212121Mo Kα radiation
a = 9.006 (3) ŵ = 0.08 mm1
b = 15.324 (6) ÅT = 88 K
c = 25.424 (11) Å0.50 × 0.22 × 0.18 mm
Data collection top
Bruker SMART CCD area-detector
diffractometer
4038 independent reflections
Absorption correction: multi-scan
(SADABS; Blessing, 1995; Sheldrick, 1996)
908 reflections with I > 2σ(I)
Tmin = 0.597, Tmax = 0.986Rint = 0.328
19603 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0530 restraints
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 0.77Δρmax = 0.16 e Å3
4038 reflectionsΔρmin = 0.20 e Å3
432 parameters
Special details top

Experimental. Crystal decay was monitored by repeating the initial 10 frames at the end of the data collection and analyzing duplicate reflections. The standard 0.8 mm diameter collimator was used.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
O10.7436 (6)0.3110 (4)0.1485 (2)0.0547 (17)
O20.7278 (6)0.1551 (4)0.0859 (2)0.0522 (17)
O30.8286 (5)0.1748 (4)0.0209 (2)0.0477 (16)
O40.7249 (6)0.3301 (3)0.0704 (2)0.0451 (15)
N10.7476 (11)0.4853 (7)0.0070 (3)0.076 (3)
N20.6674 (12)0.5128 (6)0.0405 (4)0.080 (3)
N30.5965 (14)0.5481 (7)0.0733 (4)0.105 (4)
N40.8966 (10)0.4188 (6)0.0776 (3)0.067 (3)
N50.9346 (8)0.4555 (7)0.1199 (4)0.076 (3)
N60.9805 (10)0.4868 (7)0.1563 (4)0.095 (4)
C10.6971 (9)0.3995 (6)0.0131 (3)0.045 (2)
H10.58740.39300.00820.054*
C20.7362 (10)0.3986 (6)0.0714 (3)0.049 (2)
H20.67630.44410.09000.058*
C30.7012 (9)0.3103 (6)0.0944 (4)0.050 (3)
H30.59160.30080.09220.060*
C40.7785 (9)0.2368 (6)0.0649 (3)0.049 (2)
H40.88830.24170.07000.058*
C50.7432 (9)0.2396 (5)0.0064 (3)0.044 (2)
H50.63510.22720.00120.053*
C60.7795 (9)0.3291 (6)0.0171 (3)0.046 (2)
H60.88890.34010.01630.056*
C100.6367 (10)0.2744 (6)0.1831 (3)0.060 (3)
H10A0.62180.21180.17510.073*
H10B0.54040.30490.17930.073*
C110.6970 (10)0.2856 (8)0.2388 (4)0.057 (3)
C120.7496 (10)0.3635 (7)0.2570 (4)0.061 (3)
H120.74460.41360.23510.073*
C130.8094 (11)0.3703 (7)0.3062 (4)0.072 (3)
H130.84450.42510.31850.086*
C140.8187 (11)0.2975 (8)0.3382 (4)0.074 (3)
H140.85980.30230.37250.089*
C150.7697 (12)0.2198 (7)0.3208 (4)0.082 (3)
H150.77640.17000.34300.098*
C160.7088 (9)0.2114 (7)0.2702 (4)0.067 (3)
H160.67620.15620.25770.080*
C200.8410 (11)0.1078 (7)0.1139 (4)0.096 (4)
H20A0.88940.14620.14010.115*
H20B0.91770.08640.08920.115*
C210.7654 (16)0.0311 (8)0.1413 (5)0.088 (4)
C220.8293 (11)0.0112 (7)0.1900 (5)0.090 (4)
H220.90910.04570.20290.108*
C230.7766 (14)0.0590 (7)0.2197 (5)0.106 (4)*
H230.81990.07420.25260.127*
C240.6635 (15)0.1032 (7)0.1999 (5)0.107 (5)*
H240.62710.15070.22010.129*
C250.5942 (13)0.0871 (9)0.1531 (6)0.111 (4)
H250.51200.12080.14150.133*
C260.6519 (14)0.0166 (9)0.1225 (6)0.106 (5)
H260.61050.00350.08900.127*
C300.7428 (11)0.1059 (7)0.0402 (4)0.094 (4)
H30A0.66170.12980.06220.113*
H30B0.69690.07460.01020.113*
C310.8306 (11)0.0438 (8)0.0716 (6)0.068 (4)
C320.8859 (13)0.0288 (10)0.0474 (5)0.082 (4)
H320.86700.03830.01110.099*
C330.9672 (17)0.0869 (10)0.0747 (7)0.109 (5)
H331.00620.13590.05630.131*
C340.9964 (12)0.0800 (9)0.1260 (7)0.092 (4)
H341.05440.12290.14350.110*
C350.9387 (13)0.0068 (11)0.1541 (4)0.078 (3)
H350.95480.00020.19080.093*
C360.8576 (13)0.0548 (8)0.1254 (6)0.079 (4)
H360.82020.10510.14280.094*
C400.8304 (10)0.3439 (7)0.1094 (3)0.089 (4)
H40A0.91100.30040.10570.107*
H40B0.87430.40270.10510.107*
C410.7624 (11)0.3364 (7)0.1631 (3)0.050 (3)
C420.6582 (11)0.2761 (6)0.1741 (4)0.053 (3)
H420.62490.23760.14730.064*
C430.5992 (11)0.2697 (6)0.2243 (5)0.068 (3)
H430.52520.22720.23160.081*
C440.6467 (12)0.3238 (8)0.2628 (4)0.074 (3)
H440.60690.31880.29730.089*
C450.7535 (13)0.3865 (6)0.2520 (4)0.073 (3)
H450.78520.42550.27880.088*
C460.8135 (11)0.3919 (6)0.2021 (4)0.064 (3)
H460.88900.43330.19460.076*
C510.541 (5)0.171 (4)0.001 (2)0.205 (6)*0.65 (5)
C520.387 (4)0.170 (2)0.0678 (14)0.205 (6)*0.73 (4)
C530.389 (4)0.220 (3)0.036 (2)0.205 (6)*0.63 (4)
C540.508 (4)0.1490 (19)0.0428 (19)0.205 (6)*0.71 (4)
C550.305 (4)0.254 (2)0.0731 (15)0.205 (6)*0.63 (3)
C560.657 (7)0.230 (3)0.009 (2)0.205 (6)*0.45 (3)
C570.218 (5)0.285 (2)0.038 (2)0.205 (6)*0.50 (3)
C580.304 (7)0.223 (3)0.0128 (17)0.205 (6)*0.44 (3)
C590.438 (7)0.163 (4)0.042 (3)0.205 (6)*0.32 (3)
C600.578 (9)0.102 (8)0.012 (3)0.205 (6)*0.22 (3)
C610.081 (13)0.240 (8)0.101 (5)0.205 (6)*0.132 (18)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.046 (4)0.083 (5)0.035 (4)0.002 (4)0.010 (3)0.009 (4)
O20.036 (4)0.060 (5)0.061 (4)0.002 (3)0.001 (3)0.019 (4)
O30.031 (4)0.057 (4)0.055 (4)0.011 (4)0.005 (3)0.000 (4)
O40.035 (4)0.061 (4)0.040 (4)0.002 (3)0.003 (3)0.004 (4)
N10.094 (8)0.083 (8)0.050 (7)0.011 (6)0.004 (6)0.002 (6)
N20.097 (11)0.059 (9)0.084 (11)0.024 (7)0.039 (8)0.013 (8)
N30.151 (11)0.084 (9)0.079 (10)0.024 (7)0.013 (7)0.002 (6)
N40.069 (7)0.085 (7)0.046 (6)0.000 (5)0.013 (5)0.003 (5)
N50.032 (6)0.134 (11)0.061 (8)0.002 (6)0.012 (6)0.000 (8)
N60.064 (7)0.147 (10)0.073 (8)0.011 (6)0.012 (5)0.042 (7)
C10.038 (6)0.037 (6)0.059 (7)0.003 (5)0.001 (5)0.008 (6)
C20.022 (6)0.073 (8)0.051 (7)0.003 (5)0.006 (5)0.005 (6)
C30.042 (7)0.056 (7)0.052 (7)0.007 (5)0.002 (5)0.020 (6)
C40.029 (6)0.065 (8)0.053 (7)0.001 (5)0.007 (5)0.007 (6)
C50.029 (6)0.054 (7)0.049 (7)0.010 (5)0.005 (5)0.009 (6)
C60.039 (6)0.045 (6)0.055 (7)0.001 (5)0.011 (5)0.003 (6)
C100.051 (7)0.079 (8)0.051 (7)0.001 (6)0.010 (6)0.002 (6)
C110.053 (7)0.060 (8)0.058 (8)0.003 (6)0.006 (6)0.008 (7)
C120.057 (8)0.074 (9)0.052 (8)0.012 (7)0.006 (6)0.008 (6)
C130.084 (9)0.081 (10)0.050 (8)0.013 (7)0.019 (7)0.002 (7)
C140.090 (9)0.082 (9)0.049 (7)0.024 (7)0.018 (6)0.005 (8)
C150.110 (9)0.081 (9)0.054 (8)0.029 (8)0.008 (7)0.010 (6)
C160.054 (7)0.093 (10)0.054 (7)0.019 (6)0.007 (5)0.019 (7)
C200.054 (8)0.096 (9)0.138 (11)0.020 (7)0.012 (7)0.073 (8)
C210.093 (12)0.083 (11)0.087 (10)0.057 (9)0.015 (9)0.030 (8)
C220.085 (9)0.071 (9)0.113 (10)0.020 (8)0.034 (8)0.008 (8)
C250.047 (9)0.120 (11)0.165 (15)0.003 (8)0.033 (9)0.009 (10)
C260.048 (10)0.108 (12)0.162 (15)0.009 (8)0.017 (9)0.031 (11)
C300.068 (9)0.072 (8)0.141 (11)0.006 (8)0.030 (8)0.019 (8)
C310.048 (8)0.042 (9)0.114 (13)0.016 (7)0.017 (8)0.003 (9)
C320.075 (10)0.081 (11)0.091 (11)0.032 (8)0.009 (8)0.026 (11)
C330.145 (14)0.088 (12)0.094 (13)0.029 (11)0.026 (11)0.029 (11)
C340.086 (10)0.068 (11)0.121 (14)0.014 (8)0.012 (10)0.024 (10)
C350.066 (9)0.111 (12)0.057 (9)0.020 (8)0.003 (7)0.002 (10)
C360.057 (9)0.092 (11)0.087 (11)0.012 (8)0.023 (7)0.004 (10)
C400.058 (8)0.169 (11)0.039 (7)0.013 (8)0.001 (6)0.012 (7)
C410.039 (7)0.075 (8)0.038 (6)0.003 (6)0.013 (5)0.001 (6)
C420.042 (7)0.065 (8)0.053 (8)0.010 (6)0.000 (5)0.031 (6)
C430.075 (8)0.042 (8)0.086 (9)0.015 (6)0.021 (7)0.006 (7)
C440.086 (9)0.087 (10)0.049 (8)0.006 (8)0.011 (6)0.021 (8)
C450.103 (10)0.067 (8)0.050 (8)0.004 (8)0.003 (7)0.013 (6)
C460.070 (8)0.067 (8)0.053 (8)0.013 (6)0.002 (6)0.015 (6)
Geometric parameters (Å, º) top
O1—C101.418 (8)C23—H230.9500
O1—C31.429 (8)C24—C251.367 (14)
O2—C41.435 (8)C24—H240.9500
O2—C201.440 (9)C25—C261.430 (14)
O3—C301.397 (9)C25—H250.9500
O3—C51.435 (8)C26—H260.9500
O4—C401.389 (8)C30—C311.474 (13)
O4—C61.442 (8)C30—H30A0.9900
N1—N21.194 (11)C30—H30B0.9900
N1—C11.482 (10)C31—C321.365 (13)
N2—N31.180 (11)C31—C361.400 (12)
N4—N51.261 (10)C32—C331.345 (14)
N4—C21.486 (10)C32—H320.9500
N5—N61.122 (10)C33—C341.335 (13)
C1—C61.518 (9)C33—H330.9500
C1—C21.522 (9)C34—C351.427 (12)
C1—H11.0000C34—H340.9500
C2—C31.507 (10)C35—C361.399 (13)
C2—H21.0000C35—H350.9500
C3—C41.522 (10)C36—H360.9500
C3—H31.0000C40—C411.500 (10)
C4—C51.520 (9)C40—H40A0.9900
C4—H41.0000C40—H40B0.9900
C5—C61.532 (9)C41—C421.347 (11)
C5—H51.0000C41—C461.386 (10)
C6—H61.0000C42—C431.385 (11)
C10—C111.526 (11)C42—H420.9500
C10—H10A0.9900C43—C441.353 (11)
C10—H10B0.9900C43—H430.9500
C11—C121.364 (10)C44—C451.387 (11)
C11—C161.394 (10)C44—H440.9500
C12—C131.367 (11)C45—C461.381 (11)
C12—H120.9500C45—H450.9500
C13—C141.383 (10)C46—H460.9500
C13—H130.9500C51—C561.40 (6)
C14—C151.344 (10)C51—C591.44 (6)
C14—H140.9500C52—C541.31 (4)
C15—C161.404 (10)C52—C551.49 (5)
C15—H150.9500C53—C551.31 (4)
C16—H160.9500C53—C581.47 (5)
C20—C211.528 (13)C53—C541.54 (5)
C20—H20A0.9900C54—C601.69 (11)
C20—H20B0.9900C55—C571.27 (5)
C21—C261.344 (14)C56—C57i1.35 (5)
C21—C221.397 (13)C56—C58i1.50 (6)
C22—C231.399 (12)C57—C56ii1.35 (5)
C22—H220.9500C58—C56ii1.50 (6)
C23—C241.323 (13)
C10—O1—C3114.4 (6)C21—C20—H20A110.2
C4—O2—C20113.5 (7)O2—C20—H20B110.2
C30—O3—C5113.3 (7)C21—C20—H20B110.2
C40—O4—C6116.1 (6)H20A—C20—H20B108.5
N2—N1—C1111.9 (10)C26—C21—C22120.8 (13)
N3—N2—N1172.9 (13)C26—C21—C20126.4 (14)
N5—N4—C2116.6 (8)C22—C21—C20112.8 (14)
N6—N5—N4174.1 (11)C21—C22—C23120.4 (12)
N1—C1—C6107.7 (7)C21—C22—H22119.8
N1—C1—C2105.8 (8)C23—C22—H22119.8
C6—C1—C2111.9 (7)C24—C23—C22116.7 (12)
N1—C1—H1110.4C24—C23—H23121.7
C6—C1—H1110.4C22—C23—H23121.7
C2—C1—H1110.4C23—C24—C25126.2 (13)
N4—C2—C3110.4 (7)C23—C24—H24116.9
N4—C2—C1109.1 (7)C25—C24—H24116.9
C3—C2—C1109.7 (8)C24—C25—C26116.4 (13)
N4—C2—H2109.2C24—C25—H25121.8
C3—C2—H2109.2C26—C25—H25121.8
C1—C2—H2109.2C21—C26—C25119.5 (14)
O1—C3—C2108.2 (7)C21—C26—H26120.3
O1—C3—C4111.0 (7)C25—C26—H26120.3
C2—C3—C4112.2 (7)O3—C30—C31112.5 (8)
O1—C3—H3108.5O3—C30—H30A109.1
C2—C3—H3108.5C31—C30—H30A109.1
C4—C3—H3108.5O3—C30—H30B109.1
O2—C4—C5108.8 (7)C31—C30—H30B109.1
O2—C4—C3108.5 (7)H30A—C30—H30B107.8
C5—C4—C3111.4 (8)C32—C31—C36118.3 (12)
O2—C4—H4109.4C32—C31—C30118.6 (15)
C5—C4—H4109.4C36—C31—C30123.0 (14)
C3—C4—H4109.4C33—C32—C31120.4 (14)
O3—C5—C4110.0 (7)C33—C32—H32119.8
O3—C5—C6108.4 (7)C31—C32—H32119.8
C4—C5—C6111.2 (7)C34—C33—C32123.9 (16)
O3—C5—H5109.1C34—C33—H33118.1
C4—C5—H5109.1C32—C33—H33118.1
C6—C5—H5109.1C33—C34—C35118.7 (14)
O4—C6—C1107.6 (7)C33—C34—H34120.7
O4—C6—C5107.6 (7)C35—C34—H34120.7
C1—C6—C5109.5 (7)C36—C35—C34117.4 (11)
O4—C6—H6110.7C36—C35—H35121.3
C1—C6—H6110.7C34—C35—H35121.3
C5—C6—H6110.7C35—C36—C31121.2 (12)
O1—C10—C11106.8 (7)C35—C36—H36119.4
O1—C10—H10A110.4C31—C36—H36119.4
C11—C10—H10A110.4O4—C40—C41111.0 (7)
O1—C10—H10B110.4O4—C40—H40A109.4
C11—C10—H10B110.4C41—C40—H40A109.4
H10A—C10—H10B108.6O4—C40—H40B109.4
C12—C11—C16119.5 (9)C41—C40—H40B109.4
C12—C11—C10122.4 (10)H40A—C40—H40B108.0
C16—C11—C10117.8 (10)C42—C41—C46120.2 (9)
C11—C12—C13120.9 (10)C42—C41—C40121.8 (10)
C11—C12—H12119.5C46—C41—C40118.0 (10)
C13—C12—H12119.5C41—C42—C43120.5 (9)
C12—C13—C14120.0 (10)C41—C42—H42119.8
C12—C13—H13120.0C43—C42—H42119.8
C14—C13—H13120.0C44—C43—C42120.2 (9)
C15—C14—C13120.1 (10)C44—C43—H43119.9
C15—C14—H14120.0C42—C43—H43119.9
C13—C14—H14120.0C43—C44—C45120.0 (9)
C14—C15—C16120.7 (10)C43—C44—H44120.0
C14—C15—H15119.6C45—C44—H44120.0
C16—C15—H15119.6C46—C45—C44119.7 (9)
C11—C16—C15118.7 (9)C46—C45—H45120.2
C11—C16—H16120.7C44—C45—H45120.2
C15—C16—H16120.7C45—C46—C41119.4 (9)
O2—C20—C21107.3 (9)C45—C46—H46120.3
O2—C20—H20A110.2C41—C46—H46120.3
N2—N1—C1—C694.6 (10)C10—C11—C12—C13176.9 (8)
N2—N1—C1—C2145.5 (9)C11—C12—C13—C140.7 (14)
N5—N4—C2—C388.0 (10)C12—C13—C14—C150.3 (15)
N5—N4—C2—C1151.4 (8)C13—C14—C15—C160.1 (16)
N1—C1—C2—N453.9 (9)C12—C11—C16—C152.4 (13)
C6—C1—C2—N463.2 (9)C10—C11—C16—C15177.4 (8)
N1—C1—C2—C3175.0 (7)C14—C15—C16—C111.4 (14)
C6—C1—C2—C357.9 (9)C4—O2—C20—C21170.8 (8)
C10—O1—C3—C2134.6 (7)O2—C20—C21—C2636.3 (15)
C10—O1—C3—C4101.9 (8)O2—C20—C21—C22145.3 (9)
N4—C2—C3—O158.0 (9)C26—C21—C22—C230.4 (17)
C1—C2—C3—O1178.2 (6)C20—C21—C22—C23178.1 (9)
N4—C2—C3—C464.8 (10)C21—C22—C23—C241.3 (15)
C1—C2—C3—C455.5 (9)C22—C23—C24—C250.4 (17)
C20—O2—C4—C5126.6 (8)C23—C24—C25—C261.3 (18)
C20—O2—C4—C3112.0 (8)C22—C21—C26—C251.4 (18)
O1—C3—C4—O264.5 (8)C20—C21—C26—C25179.6 (9)
C2—C3—C4—O2174.4 (7)C24—C25—C26—C212.1 (17)
O1—C3—C4—C5175.8 (7)C5—O3—C30—C31175.5 (9)
C2—C3—C4—C554.7 (10)O3—C30—C31—C3295.1 (11)
C30—O3—C5—C4110.5 (8)O3—C30—C31—C3686.1 (12)
C30—O3—C5—C6127.7 (8)C36—C31—C32—C331.5 (15)
O2—C4—C5—O366.0 (8)C30—C31—C32—C33179.7 (10)
C3—C4—C5—O3174.5 (7)C31—C32—C33—C341.7 (19)
O2—C4—C5—C6173.9 (7)C32—C33—C34—C350.0 (19)
C3—C4—C5—C654.4 (9)C33—C34—C35—C361.7 (16)
C40—O4—C6—C1122.1 (8)C34—C35—C36—C311.8 (16)
C40—O4—C6—C5119.9 (8)C32—C31—C36—C350.3 (15)
N1—C1—C6—O469.3 (8)C30—C31—C36—C35178.5 (10)
C2—C1—C6—O4174.8 (7)C6—O4—C40—C41175.5 (7)
N1—C1—C6—C5174.0 (7)O4—C40—C41—C4238.5 (13)
C2—C1—C6—C558.1 (9)O4—C40—C41—C46143.5 (9)
O3—C5—C6—O466.5 (8)C46—C41—C42—C431.0 (13)
C4—C5—C6—O4172.5 (6)C40—C41—C42—C43178.9 (9)
O3—C5—C6—C1176.9 (7)C41—C42—C43—C440.5 (14)
C4—C5—C6—C155.8 (9)C42—C43—C44—C450.7 (15)
C3—O1—C10—C11176.8 (7)C43—C44—C45—C461.6 (15)
O1—C10—C11—C1249.4 (11)C44—C45—C46—C412.1 (14)
O1—C10—C11—C16125.5 (8)C42—C41—C46—C451.8 (14)
C16—C11—C12—C132.1 (14)C40—C41—C46—C45179.8 (9)
Symmetry codes: (i) x+1/2, y1/2, z; (ii) x1/2, y1/2, z.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C2—H2···Cg1iii1.02.643.510 (10)146
C43—H43···Cg2iii0.952.823.597 (11)140
C1—H1···O3iii1.002.573.514 (10)157
C30—H30A···N4iii0.992.533.282 (13)132
C14—H14···N3iv0.952.703.353 (16)126
C20—H20B···N3v0.992.653.474 (16)141
Symmetry codes: (iii) x1/2, y+1/2, z; (iv) x+3/2, y+1, z+1/2; (v) x+1/2, y+1/2, z.

Experimental details

Crystal data
Chemical formulaC34H34N6O4·0.6C4H10O
Mr655.53
Crystal system, space groupOrthorhombic, P212121
Temperature (K)88
a, b, c (Å)9.006 (3), 15.324 (6), 25.424 (11)
V3)3509 (2)
Z4
Radiation typeMo Kα
µ (mm1)0.08
Crystal size (mm)0.50 × 0.22 × 0.18
Data collection
DiffractometerBruker SMART CCD area-detector
diffractometer
Absorption correctionMulti-scan
(SADABS; Blessing, 1995; Sheldrick, 1996)
Tmin, Tmax0.597, 0.986
No. of measured, independent and
observed [I > 2σ(I)] reflections
19603, 4038, 908
Rint0.328
(sin θ/λ)max1)0.626
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.053, 0.127, 0.77
No. of reflections4038
No. of parameters432
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.16, 0.20

Computer programs: SMART (Siemens, 1996), SMART, SAINT (Siemens, 1996), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), SHELXL97 and PLATON (Spek, 2003).

Selected geometric parameters (Å, º) top
O1—C31.429 (8)N1—C11.482 (10)
N1—N21.194 (11)N2—N31.180 (11)
C10—O1—C3114.4 (6)N3—N2—N1172.9 (13)
N2—N1—C1111.9 (10)N1—C1—C2105.8 (8)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
C2—H2···Cg1i1.02.643.510 (10)146
C43—H43···Cg2i0.952.823.597 (11)140
C1—H1···O3i1.002.573.514 (10)157
C30—H30A···N4i0.992.533.282 (13)132
C14—H14···N3ii0.952.703.353 (16)126
C20—H20B···N3iii0.992.653.474 (16)141
Symmetry codes: (i) x1/2, y+1/2, z; (ii) x+3/2, y+1, z+1/2; (iii) x+1/2, y+1/2, z.
 

Follow Acta Cryst. E
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds