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In the title compound, C20H28N4O8, the two methyl groups attached to the cyclo­butane ring are cis oriented. The crystal structure is stabilized by inter­molecular N—H...O hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806011494/wn2014sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536806011494/wn2014Isup2.hkl
Contains datablock I

CCDC reference: 608524

Key indicators

  • Single-crystal X-ray study
  • T = 293 K
  • Mean [sigma](C-C) = 0.003 Å
  • Disorder in main residue
  • R factor = 0.046
  • wR factor = 0.118
  • Data-to-parameter ratio = 15.2

checkCIF/PLATON results

No syntax errors found




Alert level C PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.96 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_C Check the Reported _diffrn_ambient_temperature . 293 K PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.93 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.64 Ratio PLAT301_ALERT_3_C Main Residue Disorder ......................... 6.00 Perc.
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1999); software used to prepare material for publication: SHELXTL.

Diethyl 3,3'-(cis-[4a]-cisoid-[4a,4 b]-cis-[4 b]-9,11-dimethyl-2,4,6,8- tetraoxoperhydrocyclobuta[1,2 - d:3,4 - d]dipyrimidine-1,5-diyl)dipropionate top
Crystal data top
C20H28N4O8F(000) = 960
Mr = 452.46Dx = 1.331 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 12.918 (6) ÅCell parameters from 952 reflections
b = 12.090 (6) Åθ = 2.4–25.1°
c = 15.488 (8) ŵ = 0.10 mm1
β = 110.993 (8)°T = 293 K
V = 2258 (2) Å3Block, colorless
Z = 40.38 × 0.36 × 0.34 mm
Data collection top
Bruker SMART CCD area-detector
diffractometer
4613 independent reflections
Radiation source: fine-focus sealed tube2990 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 26.4°, θmin = 2.4°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1615
Tmin = 0.903, Tmax = 1.000k = 1215
12464 measured reflectionsl = 1913
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.0517P)2 + 0.5195P]
where P = (Fo2 + 2Fc2)/3
4613 reflections(Δ/σ)max < 0.001
304 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = 0.20 e Å3
Special details top

Experimental. 1H NMR (300 MHz, [D6]DMSO): deta=1.18 (t, J=7.0 Hz, 6H), 1.44 (s, 6H), 2.64 (m, 4H), 3.23 (m, 2H), 3.72 (s, 2H), 3.81 (m, 2H), 4.07 (q, J=7.0 Hz, 4H), 10.34 (s, 2H); 13C NMR (300 MHz, [D6]DMSO): deta=14.05, 23.10, 32.49, 40.35, 48.13, 60.06, 61.69, 150.96, 170.77, 171.24. TOFMS (CI) calcd for (M+) C20H29N4O8: 453.1985, found: 453.1989.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
N10.14325 (12)0.28163 (13)0.11190 (10)0.0336 (4)
N20.07294 (12)0.45131 (13)0.13842 (11)0.0377 (4)
H2A0.06290.51980.12250.045*
N30.19393 (12)0.27695 (13)0.15140 (10)0.0320 (4)
N40.18893 (12)0.35457 (14)0.01436 (11)0.0376 (4)
H4A0.21450.40510.02690.045*
O10.20700 (12)0.44207 (13)0.07575 (11)0.0562 (4)
O20.03526 (12)0.47539 (12)0.22356 (10)0.0516 (4)
O30.32706 (11)0.39572 (13)0.06667 (10)0.0499 (4)
O40.06555 (11)0.31140 (12)0.05270 (9)0.0451 (4)
O50.42613 (13)0.16069 (13)0.28547 (11)0.0559 (4)
O60.28324 (13)0.05219 (15)0.20681 (12)0.0713 (5)
O70.44422 (12)0.04475 (13)0.14332 (12)0.0613 (5)
O80.25979 (13)0.03946 (14)0.18792 (13)0.0707 (5)
C10.14510 (15)0.39243 (17)0.10654 (13)0.0365 (5)
C20.01603 (14)0.41271 (17)0.19230 (13)0.0350 (4)
C30.02554 (14)0.28993 (15)0.21236 (12)0.0308 (4)
C40.06520 (14)0.22552 (15)0.14415 (12)0.0318 (4)
H40.09800.15540.17290.038*
C50.05881 (14)0.20421 (15)0.07982 (12)0.0310 (4)
C60.08754 (14)0.22644 (15)0.16642 (12)0.0299 (4)
H60.08360.15640.19930.036*
C70.24164 (15)0.34482 (16)0.07926 (13)0.0342 (4)
C80.10286 (14)0.29448 (16)0.00837 (12)0.0323 (4)
C90.08799 (17)0.2723 (2)0.31571 (13)0.0481 (6)
H9A0.15960.30670.33350.072*
H9B0.09690.19450.32860.072*
H9C0.04670.30460.35000.072*
C100.08983 (18)0.09129 (18)0.03396 (16)0.0505 (6)
H10A0.16890.08240.01220.076*
H10B0.05540.03430.07810.076*
H10C0.06480.08610.01720.076*
C110.20756 (16)0.21850 (18)0.06763 (13)0.0415 (5)
H11A0.20380.25560.01110.050*
H11B0.17480.14570.05120.050*
C120.32815 (16)0.20599 (19)0.12987 (15)0.0456 (5)
H12A0.37000.17650.09410.055*
H12B0.35830.27820.15290.055*
C130.34127 (16)0.13082 (18)0.21013 (15)0.0442 (5)
C140.4494 (2)0.0907 (2)0.36797 (17)0.0630 (7)0.535 (5)
H14A0.52880.08640.40110.076*0.535 (5)
H14B0.42180.01650.34970.076*0.535 (5)
C150.3929 (5)0.1404 (4)0.4308 (4)0.0783 (18)0.535 (5)
H15A0.41650.21560.44500.117*0.535 (5)
H15B0.41300.09830.48700.117*0.535 (5)
H15C0.31390.13820.39970.117*0.535 (5)
C14'0.4494 (2)0.0907 (2)0.36797 (17)0.0630 (7)0.465 (5)
H14C0.38060.06480.37270.076*0.465 (5)
H14D0.48950.13270.42320.076*0.465 (5)
C15'0.5185 (4)0.0066 (5)0.3586 (4)0.0661 (18)0.465 (5)
H15D0.47600.05070.30630.099*0.465 (5)
H15E0.53920.05080.41370.099*0.465 (5)
H15F0.58400.02000.34980.099*0.465 (5)
C160.24076 (16)0.27283 (18)0.22484 (13)0.0405 (5)
H16A0.25160.34780.24230.049*
H16B0.18810.23690.27870.049*
C170.35059 (16)0.21135 (18)0.19642 (16)0.0469 (5)
H17A0.38050.21890.24530.056*
H17B0.40230.24620.14150.056*
C180.34311 (17)0.09051 (19)0.17697 (15)0.0474 (5)
C190.4493 (2)0.0733 (2)0.1242 (2)0.0781 (8)
H19A0.40900.11400.18020.094*
H19B0.41620.08930.07840.094*
C200.5684 (2)0.1065 (3)0.0888 (2)0.0875 (9)
H20A0.59970.09260.13540.131*
H20B0.57430.18390.07380.131*
H20C0.60780.06440.03430.131*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0293 (8)0.0359 (10)0.0382 (9)0.0042 (7)0.0152 (7)0.0047 (7)
N20.0345 (9)0.0311 (9)0.0487 (10)0.0037 (7)0.0162 (8)0.0060 (7)
N30.0266 (8)0.0378 (9)0.0330 (9)0.0045 (7)0.0125 (7)0.0041 (7)
N40.0339 (8)0.0427 (10)0.0364 (9)0.0110 (7)0.0127 (7)0.0122 (7)
O10.0498 (9)0.0516 (10)0.0805 (11)0.0080 (7)0.0396 (9)0.0247 (8)
O20.0554 (9)0.0439 (9)0.0648 (10)0.0008 (7)0.0329 (8)0.0136 (7)
O30.0391 (8)0.0594 (10)0.0543 (9)0.0214 (7)0.0205 (7)0.0126 (7)
O40.0458 (8)0.0605 (10)0.0330 (7)0.0081 (7)0.0188 (7)0.0021 (7)
O50.0551 (10)0.0536 (10)0.0523 (10)0.0057 (8)0.0110 (8)0.0109 (8)
O60.0499 (10)0.0648 (12)0.0824 (13)0.0122 (9)0.0035 (9)0.0279 (9)
O70.0405 (9)0.0445 (10)0.0980 (13)0.0007 (7)0.0236 (8)0.0025 (9)
O80.0405 (9)0.0515 (11)0.1141 (15)0.0092 (8)0.0203 (9)0.0085 (10)
C10.0290 (10)0.0394 (12)0.0408 (11)0.0049 (8)0.0121 (9)0.0094 (9)
C20.0278 (9)0.0405 (11)0.0342 (10)0.0026 (9)0.0079 (8)0.0037 (9)
C30.0266 (9)0.0341 (11)0.0306 (10)0.0001 (8)0.0090 (8)0.0030 (8)
C40.0272 (9)0.0313 (11)0.0362 (10)0.0040 (8)0.0106 (8)0.0065 (8)
C50.0266 (9)0.0310 (10)0.0356 (10)0.0033 (8)0.0115 (8)0.0016 (8)
C60.0264 (9)0.0292 (10)0.0329 (10)0.0021 (8)0.0093 (8)0.0062 (8)
C70.0289 (10)0.0373 (11)0.0363 (11)0.0031 (8)0.0116 (8)0.0008 (9)
C80.0283 (9)0.0379 (11)0.0279 (10)0.0010 (8)0.0065 (8)0.0055 (8)
C90.0396 (11)0.0669 (16)0.0326 (11)0.0044 (11)0.0066 (9)0.0062 (10)
C100.0457 (12)0.0388 (13)0.0668 (15)0.0017 (10)0.0200 (11)0.0154 (11)
C110.0398 (11)0.0504 (14)0.0375 (11)0.0086 (10)0.0176 (9)0.0022 (9)
C120.0345 (11)0.0511 (14)0.0563 (13)0.0110 (10)0.0224 (10)0.0117 (10)
C130.0289 (10)0.0436 (13)0.0598 (14)0.0097 (10)0.0156 (10)0.0118 (10)
C140.0651 (16)0.0636 (17)0.0525 (15)0.0010 (13)0.0117 (12)0.0145 (12)
C150.103 (4)0.066 (4)0.074 (4)0.001 (3)0.041 (3)0.015 (3)
C14'0.0651 (16)0.0636 (17)0.0525 (15)0.0010 (13)0.0117 (12)0.0145 (12)
C15'0.056 (3)0.073 (4)0.061 (4)0.006 (3)0.012 (3)0.018 (3)
C160.0394 (11)0.0480 (13)0.0375 (11)0.0022 (9)0.0179 (9)0.0009 (9)
C170.0381 (12)0.0509 (14)0.0612 (14)0.0027 (10)0.0293 (11)0.0054 (11)
C180.0371 (12)0.0495 (14)0.0578 (14)0.0024 (10)0.0197 (10)0.0132 (11)
C190.0594 (16)0.0461 (17)0.126 (3)0.0032 (13)0.0294 (16)0.0016 (15)
C200.0692 (19)0.065 (2)0.125 (3)0.0134 (15)0.0300 (18)0.0078 (17)
Geometric parameters (Å, º) top
N1—C11.343 (3)C9—H9B0.9600
N1—C41.445 (2)C9—H9C0.9600
N1—C111.467 (2)C10—H10A0.9600
N2—C21.376 (2)C10—H10B0.9600
N2—C11.396 (2)C10—H10C0.9600
N2—H2A0.8600C11—C121.517 (3)
N3—C71.345 (2)C11—H11A0.9700
N3—C61.445 (2)C11—H11B0.9700
N3—C161.468 (2)C12—C131.500 (3)
N4—C81.359 (2)C12—H12A0.9700
N4—C71.407 (2)C12—H12B0.9700
N4—H4A0.8600C14—C151.532 (5)
O1—C11.225 (2)C14—H14A0.9700
O2—C21.216 (2)C14—H14B0.9700
O3—C71.217 (2)C15—H15A0.9600
O4—C81.223 (2)C15—H15B0.9600
O5—C131.333 (3)C15—H15C0.9600
O5—C141.471 (3)C15'—H15D0.9600
O6—C131.200 (3)C15'—H15E0.9600
O7—C181.340 (3)C15'—H15F0.9600
O7—C191.455 (3)C16—C171.520 (3)
O8—C181.199 (2)C16—H16A0.9700
C2—C31.512 (3)C16—H16B0.9700
C3—C91.527 (3)C17—C181.502 (3)
C3—C41.540 (3)C17—H17A0.9700
C3—C61.576 (2)C17—H17B0.9700
C4—C51.575 (2)C19—C201.491 (4)
C4—H40.9800C19—H19A0.9700
C5—C81.513 (3)C19—H19B0.9700
C5—C101.525 (3)C20—H20A0.9600
C5—C61.538 (2)C20—H20B0.9600
C6—H60.9800C20—H20C0.9600
C9—H9A0.9600
C1—N1—C4121.32 (15)C5—C10—H10B109.5
C1—N1—C11117.69 (16)H10A—C10—H10B109.5
C4—N1—C11119.98 (16)C5—C10—H10C109.5
C2—N2—C1127.65 (17)H10A—C10—H10C109.5
C2—N2—H2A116.2H10B—C10—H10C109.5
C1—N2—H2A116.2N1—C11—C12112.29 (17)
C7—N3—C6121.21 (15)N1—C11—H11A109.1
C7—N3—C16118.10 (15)C12—C11—H11A109.1
C6—N3—C16119.55 (15)N1—C11—H11B109.1
C8—N4—C7128.42 (16)C12—C11—H11B109.1
C8—N4—H4A115.8H11A—C11—H11B107.9
C7—N4—H4A115.8C13—C12—C11111.87 (17)
C13—O5—C14116.91 (18)C13—C12—H12A109.2
C18—O7—C19116.79 (18)C11—C12—H12A109.2
O1—C1—N1122.78 (18)C13—C12—H12B109.2
O1—C1—N2119.97 (19)C11—C12—H12B109.2
N1—C1—N2117.25 (16)H12A—C12—H12B107.9
O2—C2—N2121.06 (19)O6—C13—O5123.9 (2)
O2—C2—C3123.07 (17)O6—C13—C12124.1 (2)
N2—C2—C3115.83 (16)O5—C13—C12112.00 (19)
C2—C3—C9109.00 (16)O5—C14—C15109.3 (3)
C2—C3—C4112.19 (15)O5—C14—H14A109.8
C9—C3—C4117.88 (16)C15—C14—H14A109.8
C2—C3—C6113.03 (14)O5—C14—H14B109.8
C9—C3—C6117.47 (15)C15—C14—H14B109.8
C4—C3—C685.78 (13)H14A—C14—H14B108.3
N1—C4—C3116.40 (15)H15D—C15'—H15E109.5
N1—C4—C5122.39 (15)H15D—C15'—H15F109.5
C3—C4—C590.22 (13)H15E—C15'—H15F109.5
N1—C4—H4108.8N3—C16—C17113.15 (17)
C3—C4—H4108.8N3—C16—H16A108.9
C5—C4—H4108.8C17—C16—H16A108.9
C8—C5—C10109.76 (16)N3—C16—H16B108.9
C8—C5—C6111.52 (15)C17—C16—H16B108.9
C10—C5—C6117.22 (16)H16A—C16—H16B107.8
C8—C5—C4112.06 (15)C18—C17—C16114.41 (17)
C10—C5—C4118.63 (15)C18—C17—H17A108.7
C6—C5—C485.89 (13)C16—C17—H17A108.7
N3—C6—C5116.51 (14)C18—C17—H17B108.7
N3—C6—C3122.77 (15)C16—C17—H17B108.7
C5—C6—C390.26 (13)H17A—C17—H17B107.6
N3—C6—H6108.6O8—C18—O7122.9 (2)
C5—C6—H6108.6O8—C18—C17126.3 (2)
C3—C6—H6108.6O7—C18—C17110.85 (18)
O3—C7—N3124.14 (17)O7—C19—C20107.7 (2)
O3—C7—N4119.11 (17)O7—C19—H19A110.2
N3—C7—N4116.73 (16)C20—C19—H19A110.2
O4—C8—N4121.48 (17)O7—C19—H19B110.2
O4—C8—C5122.50 (17)C20—C19—H19B110.2
N4—C8—C5116.00 (15)H19A—C19—H19B108.5
C3—C9—H9A109.5C19—C20—H20A109.5
C3—C9—H9B109.5C19—C20—H20B109.5
H9A—C9—H9B109.5H20A—C20—H20B109.5
C3—C9—H9C109.5C19—C20—H20C109.5
H9A—C9—H9C109.5H20A—C20—H20C109.5
H9B—C9—H9C109.5H20B—C20—H20C109.5
C5—C10—H10A109.5
C4—N1—C1—O1176.76 (17)C10—C5—C6—C3140.95 (16)
C11—N1—C1—O18.3 (3)C4—C5—C6—C320.74 (13)
C4—N1—C1—N23.6 (3)C2—C3—C6—N331.2 (2)
C11—N1—C1—N2172.08 (15)C9—C3—C6—N397.2 (2)
C2—N2—C1—O1164.87 (18)C4—C3—C6—N3143.50 (17)
C2—N2—C1—N114.8 (3)C2—C3—C6—C591.11 (16)
C1—N2—C2—O2172.13 (18)C9—C3—C6—C5140.59 (17)
C1—N2—C2—C35.6 (3)C4—C3—C6—C521.24 (13)
O2—C2—C3—C963.8 (2)C6—N3—C7—O3174.62 (18)
N2—C2—C3—C9113.88 (18)C16—N3—C7—O36.8 (3)
O2—C2—C3—C4163.75 (17)C6—N3—C7—N46.6 (3)
N2—C2—C3—C418.6 (2)C16—N3—C7—N4174.37 (16)
O2—C2—C3—C668.8 (2)C8—N4—C7—O3170.17 (19)
N2—C2—C3—C6113.55 (17)C8—N4—C7—N38.7 (3)
C1—N1—C4—C328.0 (2)C7—N4—C8—O4179.36 (18)
C11—N1—C4—C3163.74 (15)C7—N4—C8—C51.0 (3)
C1—N1—C4—C580.6 (2)C10—C5—C8—O469.2 (2)
C11—N1—C4—C587.6 (2)C6—C5—C8—O4159.16 (17)
C2—C3—C4—N134.4 (2)C4—C5—C8—O464.8 (2)
C9—C3—C4—N193.5 (2)C10—C5—C8—N4109.14 (18)
C6—C3—C4—N1147.57 (15)C6—C5—C8—N422.5 (2)
C2—C3—C4—C592.46 (16)C4—C5—C8—N4116.85 (17)
C9—C3—C4—C5139.68 (17)C1—N1—C11—C1284.8 (2)
C6—C3—C4—C520.71 (12)C4—N1—C11—C12106.6 (2)
N1—C4—C5—C831.6 (2)N1—C11—C12—C1369.6 (2)
C3—C4—C5—C890.32 (16)C14—O5—C13—O61.1 (3)
N1—C4—C5—C1097.9 (2)C14—O5—C13—C12178.06 (18)
C3—C4—C5—C10140.14 (17)C11—C12—C13—O633.5 (3)
N1—C4—C5—C6143.18 (17)C11—C12—C13—O5147.36 (18)
C3—C4—C5—C621.25 (13)C13—O5—C14—C1595.7 (3)
C7—N3—C6—C529.3 (2)C7—N3—C16—C1773.5 (2)
C16—N3—C6—C5163.07 (16)C6—N3—C16—C17118.47 (19)
C7—N3—C6—C379.8 (2)N3—C16—C17—C1864.6 (2)
C16—N3—C6—C387.8 (2)C19—O7—C18—O82.9 (3)
C8—C5—C6—N336.0 (2)C19—O7—C18—C17178.0 (2)
C10—C5—C6—N391.7 (2)C16—C17—C18—O85.4 (3)
C4—C5—C6—N3148.12 (16)C16—C17—C18—O7173.61 (18)
C8—C5—C6—C391.36 (16)C18—O7—C19—C20179.3 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2A···O4i0.862.323.148 (3)163
N4—H4A···O1i0.862.012.795 (3)151
Symmetry code: (i) x, y+1, z.
 

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