organic compounds
The structure of the title compound, C10H10O3, a colourless lump metabolite isolated from Diaporthe phaseolorum, was determined by X-ray analysis. The molecular packing in the crystal structure is stabilized by weak O—HO=C hydrogen-bonding interactions.
Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806033939/bh2039sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536806033939/bh2039Isup2.hkl |
CCDC reference: 620649
Key indicators
- Single-crystal X-ray study
- T = 273 K
- Mean (C-C) = 0.003 Å
- R factor = 0.061
- wR factor = 0.161
- Data-to-parameter ratio = 14.6
checkCIF/PLATON results
No syntax errors found
Alert level B SHFSU01_ALERT_2_B The absolute value of parameter shift to su ratio > 0.10 Absolute value of the parameter shift to su ratio given 0.154 Additional refinement cycles may be required. PLAT080_ALERT_2_B Maximum Shift/Error ............................ 0.15
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
0 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Computing details top
Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
7-Hydroxy-4,6-dimethyl-3H-isobenzofuran-1-one top
Crystal data top
C10H10O3 | F(000) = 752 |
Mr = 178.18 | Dx = 1.396 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 3244 reflections |
a = 14.362 (5) Å | θ = 2.8–27.4° |
b = 8.220 (3) Å | µ = 0.10 mm−1 |
c = 14.360 (2) Å | T = 273 K |
V = 1695.5 (9) Å3 | Chunk, colourless |
Z = 8 | 0.38 × 0.25 × 0.11 mm |
Data collection top
Bruker APEX area-detector diffractometer | 1750 independent reflections |
Radiation source: fine-focus sealed tube | 1577 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
φ and ω scans | θmax = 26.5°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −17→18 |
Tmin = 0.962, Tmax = 0.989 | k = −5→10 |
8712 measured reflections | l = −18→17 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.161 | H-atom parameters constrained |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0779P)2 + 0.9444P] where P = (Fo2 + 2Fc2)/3 |
1750 reflections | (Δ/σ)max = 0.154 |
120 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
x | y | z | Uiso*/Ueq | ||
O1 | −0.01139 (15) | 0.10792 (19) | 0.41702 (13) | 0.0612 (6) | |
C1 | 0.01894 (16) | 0.2376 (3) | 0.39665 (15) | 0.0401 (5) | |
O2 | 0.00197 (12) | 0.30531 (18) | 0.31362 (10) | 0.0488 (5) | |
C2 | 0.07657 (13) | 0.3470 (2) | 0.44961 (14) | 0.0323 (5) | |
O3 | 0.09450 (11) | 0.19702 (17) | 0.59115 (11) | 0.0452 (4) | |
H3A | 0.0617 | 0.1326 | 0.5624 | 0.068* | |
C3 | 0.11031 (13) | 0.3286 (2) | 0.53837 (14) | 0.0330 (5) | |
C4 | 0.16383 (14) | 0.4537 (3) | 0.57452 (15) | 0.0369 (5) | |
C5 | 0.17852 (14) | 0.5892 (3) | 0.52042 (16) | 0.0404 (5) | |
H5A | 0.2140 | 0.6729 | 0.5457 | 0.048* | |
C6 | 0.14476 (14) | 0.6102 (2) | 0.43185 (15) | 0.0381 (5) | |
C7 | 0.09345 (13) | 0.4832 (2) | 0.39740 (14) | 0.0335 (5) | |
C8 | 0.04661 (17) | 0.4612 (3) | 0.30713 (15) | 0.0431 (5) | |
H8A | 0.0011 | 0.5466 | 0.2967 | 0.052* | |
H8B | 0.0914 | 0.4626 | 0.2566 | 0.052* | |
C9 | 0.20502 (18) | 0.4407 (3) | 0.66937 (17) | 0.0526 (6) | |
H9A | 0.2161 | 0.5478 | 0.6937 | 0.079* | |
H9B | 0.2628 | 0.3823 | 0.6660 | 0.079* | |
H9C | 0.1627 | 0.3837 | 0.7095 | 0.079* | |
C10 | 0.16237 (19) | 0.7624 (3) | 0.37762 (19) | 0.0565 (7) | |
H10A | 0.1258 | 0.7610 | 0.3217 | 0.085* | |
H10B | 0.2272 | 0.7689 | 0.3618 | 0.085* | |
H10C | 0.1454 | 0.8551 | 0.4146 | 0.085* |
Atomic displacement parameters (Å2) top
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0941 (14) | 0.0364 (9) | 0.0531 (11) | −0.0225 (9) | −0.0153 (9) | 0.0031 (7) |
C1 | 0.0529 (13) | 0.0337 (10) | 0.0337 (11) | −0.0017 (9) | −0.0049 (9) | −0.0036 (8) |
O2 | 0.0712 (11) | 0.0427 (9) | 0.0327 (9) | −0.0105 (8) | −0.0135 (7) | −0.0006 (6) |
C2 | 0.0341 (10) | 0.0305 (9) | 0.0322 (10) | 0.0012 (8) | 0.0012 (8) | −0.0030 (8) |
O3 | 0.0595 (10) | 0.0380 (8) | 0.0381 (9) | −0.0092 (7) | −0.0104 (7) | 0.0063 (6) |
C3 | 0.0330 (9) | 0.0329 (10) | 0.0331 (10) | 0.0019 (8) | −0.0005 (8) | 0.0002 (8) |
C4 | 0.0348 (10) | 0.0394 (11) | 0.0367 (11) | 0.0012 (8) | −0.0045 (8) | −0.0045 (9) |
C5 | 0.0351 (10) | 0.0375 (11) | 0.0486 (13) | −0.0069 (8) | −0.0050 (9) | −0.0080 (9) |
C6 | 0.0358 (10) | 0.0348 (11) | 0.0439 (12) | −0.0034 (8) | 0.0036 (9) | 0.0006 (9) |
C7 | 0.0335 (10) | 0.0345 (10) | 0.0325 (10) | 0.0030 (8) | 0.0046 (8) | 0.0005 (8) |
C8 | 0.0545 (13) | 0.0419 (12) | 0.0328 (11) | −0.0051 (10) | −0.0015 (9) | 0.0028 (9) |
C9 | 0.0576 (14) | 0.0547 (14) | 0.0455 (14) | −0.0042 (12) | −0.0177 (11) | −0.0035 (11) |
C10 | 0.0650 (16) | 0.0452 (13) | 0.0593 (16) | −0.0158 (11) | 0.0012 (13) | 0.0105 (12) |
Geometric parameters (Å, º) top
O1—C1 | 1.188 (3) | C5—H5A | 0.9300 |
C1—O2 | 1.338 (3) | C6—C7 | 1.370 (3) |
C1—C2 | 1.439 (3) | C6—C10 | 1.496 (3) |
O2—C8 | 1.436 (3) | C7—C8 | 1.472 (3) |
C2—C7 | 1.369 (3) | C8—H8A | 0.9700 |
C2—C3 | 1.372 (3) | C8—H8B | 0.9700 |
O3—C3 | 1.340 (2) | C9—H9A | 0.9600 |
O3—H3A | 0.8200 | C9—H9B | 0.9600 |
C3—C4 | 1.385 (3) | C9—H9C | 0.9600 |
C4—C5 | 1.374 (3) | C10—H10A | 0.9600 |
C4—C9 | 1.489 (3) | C10—H10B | 0.9600 |
C5—C6 | 1.372 (3) | C10—H10C | 0.9600 |
O1—C1—O2 | 121.7 (2) | C2—C7—C8 | 107.53 (18) |
O1—C1—C2 | 129.9 (2) | C6—C7—C8 | 131.10 (19) |
O2—C1—C2 | 108.42 (18) | O2—C8—C7 | 104.85 (16) |
C1—O2—C8 | 110.34 (16) | O2—C8—H8A | 110.8 |
C7—C2—C3 | 122.44 (18) | C7—C8—H8A | 110.8 |
C7—C2—C1 | 108.85 (18) | O2—C8—H8B | 110.8 |
C3—C2—C1 | 128.69 (19) | C7—C8—H8B | 110.8 |
C3—O3—H3A | 109.5 | H8A—C8—H8B | 108.9 |
O3—C3—C2 | 123.69 (18) | C4—C9—H9A | 109.5 |
O3—C3—C4 | 118.77 (18) | C4—C9—H9B | 109.5 |
C2—C3—C4 | 117.54 (18) | H9A—C9—H9B | 109.5 |
C5—C4—C3 | 118.37 (19) | C4—C9—H9C | 109.5 |
C5—C4—C9 | 120.96 (19) | H9A—C9—H9C | 109.5 |
C3—C4—C9 | 120.7 (2) | H9B—C9—H9C | 109.5 |
C6—C5—C4 | 124.86 (19) | C6—C10—H10A | 109.5 |
C6—C5—H5A | 117.6 | C6—C10—H10B | 109.5 |
C4—C5—H5A | 117.6 | H10A—C10—H10B | 109.5 |
C7—C6—C5 | 115.42 (19) | C6—C10—H10C | 109.5 |
C7—C6—C10 | 122.7 (2) | H10A—C10—H10C | 109.5 |
C5—C6—C10 | 121.9 (2) | H10B—C10—H10C | 109.5 |
C2—C7—C6 | 121.36 (19) | ||
O1—C1—O2—C8 | −180.0 (2) | C9—C4—C5—C6 | 178.8 (2) |
C2—C1—O2—C8 | −0.1 (2) | C4—C5—C6—C7 | −0.4 (3) |
O1—C1—C2—C7 | −179.5 (2) | C4—C5—C6—C10 | 179.0 (2) |
O2—C1—C2—C7 | 0.6 (2) | C3—C2—C7—C6 | −0.6 (3) |
O1—C1—C2—C3 | −0.8 (4) | C1—C2—C7—C6 | 178.25 (18) |
O2—C1—C2—C3 | 179.40 (19) | C3—C2—C7—C8 | −179.70 (19) |
C7—C2—C3—O3 | 179.68 (18) | C1—C2—C7—C8 | −0.8 (2) |
C1—C2—C3—O3 | 1.0 (3) | C5—C6—C7—C2 | 1.0 (3) |
C7—C2—C3—C4 | −0.5 (3) | C10—C6—C7—C2 | −178.3 (2) |
C1—C2—C3—C4 | −179.2 (2) | C5—C6—C7—C8 | 179.9 (2) |
O3—C3—C4—C5 | −179.05 (18) | C10—C6—C7—C8 | 0.5 (4) |
C2—C3—C4—C5 | 1.1 (3) | C1—O2—C8—C7 | −0.4 (2) |
O3—C3—C4—C9 | 1.5 (3) | C2—C7—C8—O2 | 0.7 (2) |
C2—C3—C4—C9 | −178.3 (2) | C6—C7—C8—O2 | −178.2 (2) |
C3—C4—C5—C6 | −0.7 (3) |