In the crystal structure of the title compound, C17H15ClN4S, the benzothiazole, imidazolidine and benzene rings are twisted relative to each other.
Supporting information
CCDC reference: 294237
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.046
- wR factor = 0.135
- Data-to-parameter ratio = 33.7
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT063_ALERT_3_C Crystal Probably too Large for Beam Size ....... 0.76 mm
PLAT322_ALERT_2_C Check Hybridisation of S1 in Main Residue . ?
Alert level G
PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K
PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
2 ALERT level G = General alerts; check
2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: SMART (Siemens, 1996); cell refinement: SMART; data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: Win GX (Farrugia, 1999).
(1,3-Benzothiazol-2-yl)[1-(2-chlorobenzyl)imidazolidin-2-ylidene]amine
top
Crystal data top
C17H15ClN4S | F(000) = 1424 |
Mr = 342.85 | Dx = 1.431 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -C 2yc | Cell parameters from 6246 reflections |
a = 20.0595 (3) Å | θ = 2.2–32.6° |
b = 10.6269 (2) Å | µ = 0.38 mm−1 |
c = 15.0647 (2) Å | T = 293 K |
β = 97.572 (1)° | Block, colourless |
V = 3183.34 (9) Å3 | 0.76 × 0.45 × 0.44 mm |
Z = 8 | |
Data collection top
Siemens SMART CCD area-detector diffractometer | 4725 reflections with I > 2σ(I) |
Radiation source: sealed tube | Rint = 0.025 |
Graphite monochromator | θmax = 35.1°, θmin = 2.1° |
φ and ω scans | h = −32→31 |
34371 measured reflections | k = −17→16 |
7012 independent reflections | l = −24→23 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0611P)2 + 1.0812P] where P = (Fo2 + 2Fc2)/3 |
7012 reflections | (Δ/σ)max = 0.001 |
208 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
Special details top
Geometry. Bond distances, angles etc. have been calculated using the rounded
fractional coordinates. All su's are estimated from the variances of the
(full) variance-covariance matrix. The cell e.s.d.'s are taken into account in
the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user
for potential systematic errors. Weighted R-factors wR and all
goodnesses of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The observed criterion of F2 > σ(F2)
is used only for calculating -R-factor-obs etc. and is not
relevant to the choice of reflections for refinement. R-factors based
on F2 are statistically about twice as large as those based on
F, and R-factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.21165 (2) | −0.24033 (4) | 1.17837 (3) | 0.0633 (1) | |
S1 | 0.09284 (2) | 0.48759 (3) | 1.02029 (2) | 0.0498 (1) | |
N1 | 0.14262 (5) | 0.38995 (10) | 0.88465 (7) | 0.0406 (3) | |
N2 | 0.14773 (6) | 0.26105 (9) | 1.01750 (7) | 0.0412 (3) | |
N3 | 0.17997 (6) | 0.14563 (11) | 0.89233 (7) | 0.0472 (3) | |
N4 | 0.19475 (6) | 0.05992 (10) | 1.02618 (7) | 0.0446 (3) | |
C1 | 0.09229 (6) | 0.57917 (12) | 0.92472 (8) | 0.0438 (3) | |
C2 | 0.06912 (8) | 0.70176 (15) | 0.90824 (10) | 0.0573 (5) | |
C3 | 0.07460 (9) | 0.75364 (14) | 0.82526 (11) | 0.0611 (5) | |
C4 | 0.10240 (8) | 0.68605 (14) | 0.76017 (10) | 0.0560 (5) | |
C5 | 0.12566 (7) | 0.56487 (13) | 0.77680 (9) | 0.0485 (4) | |
C6 | 0.12071 (6) | 0.51007 (11) | 0.85982 (8) | 0.0387 (3) | |
C7 | 0.13211 (6) | 0.36536 (11) | 0.96722 (7) | 0.0377 (3) | |
C8 | 0.17269 (5) | 0.16317 (11) | 0.97909 (7) | 0.0368 (3) | |
C9 | 0.21557 (8) | 0.02956 (14) | 0.87953 (9) | 0.0525 (4) | |
C10 | 0.21417 (7) | −0.03927 (12) | 0.96822 (9) | 0.0466 (4) | |
C11 | 0.18685 (7) | 0.03865 (12) | 1.11926 (8) | 0.0431 (3) | |
C12 | 0.12727 (6) | −0.04472 (11) | 1.12938 (7) | 0.0388 (3) | |
C13 | 0.06237 (7) | 0.00471 (14) | 1.11059 (10) | 0.0509 (4) | |
C14 | 0.00621 (7) | −0.06804 (17) | 1.11621 (10) | 0.0602 (5) | |
C15 | 0.01317 (8) | −0.19258 (17) | 1.14181 (10) | 0.0609 (5) | |
C16 | 0.07627 (9) | −0.24413 (14) | 1.16185 (10) | 0.0549 (5) | |
C17 | 0.13259 (7) | −0.17068 (12) | 1.15488 (8) | 0.0426 (3) | |
H2 | 0.05050 | 0.74730 | 0.95170 | 0.0690* | |
H3 | 0.16540 | 0.19670 | 0.84990 | 0.0570* | |
H3A | 0.05940 | 0.83520 | 0.81280 | 0.0730* | |
H4 | 0.10540 | 0.72280 | 0.70480 | 0.0670* | |
H5 | 0.14440 | 0.52030 | 0.73310 | 0.0580* | |
H9A | 0.26140 | 0.04620 | 0.86870 | 0.0630* | |
H9B | 0.19280 | −0.01860 | 0.82990 | 0.0630* | |
H10A | 0.18150 | −0.10700 | 0.96210 | 0.0560* | |
H10B | 0.25800 | −0.07320 | 0.99070 | 0.0560* | |
H11A | 0.18110 | 0.11890 | 1.14790 | 0.0520* | |
H11B | 0.22740 | −0.00020 | 1.14950 | 0.0520* | |
H13 | 0.05700 | 0.08870 | 1.09390 | 0.0610* | |
H14 | −0.03640 | −0.03320 | 1.10270 | 0.0720* | |
H15 | −0.02480 | −0.24160 | 1.14550 | 0.0730* | |
H16 | 0.08120 | −0.32770 | 1.17990 | 0.0660* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.0673 (2) | 0.0534 (2) | 0.0698 (2) | 0.0233 (2) | 0.0115 (2) | 0.0098 (2) |
S1 | 0.0613 (2) | 0.0501 (2) | 0.0403 (2) | 0.0162 (1) | 0.0149 (1) | 0.0020 (1) |
N1 | 0.0470 (5) | 0.0380 (5) | 0.0380 (5) | 0.0007 (4) | 0.0104 (4) | 0.0012 (4) |
N2 | 0.0499 (5) | 0.0386 (5) | 0.0363 (5) | 0.0038 (4) | 0.0098 (4) | 0.0015 (4) |
N3 | 0.0602 (6) | 0.0457 (6) | 0.0368 (5) | 0.0117 (5) | 0.0111 (4) | 0.0022 (4) |
N4 | 0.0570 (6) | 0.0397 (5) | 0.0389 (5) | 0.0077 (4) | 0.0126 (4) | 0.0037 (4) |
C1 | 0.0451 (6) | 0.0441 (6) | 0.0419 (6) | 0.0060 (5) | 0.0047 (5) | 0.0007 (5) |
C2 | 0.0676 (9) | 0.0478 (8) | 0.0555 (8) | 0.0164 (7) | 0.0045 (6) | 0.0005 (6) |
C3 | 0.0710 (10) | 0.0446 (8) | 0.0647 (9) | 0.0101 (7) | −0.0019 (7) | 0.0087 (6) |
C4 | 0.0651 (8) | 0.0497 (8) | 0.0522 (8) | −0.0026 (6) | 0.0038 (6) | 0.0136 (6) |
C5 | 0.0549 (7) | 0.0474 (7) | 0.0444 (6) | −0.0019 (5) | 0.0107 (5) | 0.0053 (5) |
C6 | 0.0379 (5) | 0.0383 (6) | 0.0397 (5) | −0.0024 (4) | 0.0045 (4) | 0.0008 (4) |
C7 | 0.0387 (5) | 0.0377 (5) | 0.0371 (5) | −0.0004 (4) | 0.0071 (4) | −0.0017 (4) |
C8 | 0.0363 (5) | 0.0383 (5) | 0.0361 (5) | −0.0011 (4) | 0.0060 (4) | 0.0011 (4) |
C9 | 0.0643 (8) | 0.0507 (7) | 0.0446 (6) | 0.0137 (6) | 0.0152 (6) | −0.0013 (5) |
C10 | 0.0518 (7) | 0.0412 (6) | 0.0478 (6) | 0.0067 (5) | 0.0106 (5) | −0.0026 (5) |
C11 | 0.0489 (6) | 0.0433 (6) | 0.0366 (5) | 0.0007 (5) | 0.0036 (4) | 0.0035 (4) |
C12 | 0.0456 (6) | 0.0398 (6) | 0.0310 (5) | 0.0039 (4) | 0.0053 (4) | 0.0002 (4) |
C13 | 0.0501 (7) | 0.0498 (7) | 0.0517 (7) | 0.0090 (6) | 0.0022 (5) | 0.0012 (6) |
C14 | 0.0456 (7) | 0.0769 (11) | 0.0570 (8) | 0.0032 (7) | 0.0030 (6) | −0.0063 (7) |
C15 | 0.0570 (8) | 0.0771 (11) | 0.0500 (8) | −0.0199 (8) | 0.0127 (6) | −0.0114 (7) |
C16 | 0.0754 (10) | 0.0449 (7) | 0.0467 (7) | −0.0088 (6) | 0.0164 (6) | −0.0014 (5) |
C17 | 0.0531 (6) | 0.0406 (6) | 0.0348 (5) | 0.0059 (5) | 0.0089 (5) | 0.0000 (4) |
Geometric parameters (Å, º) top
Cl1—C17 | 1.7436 (14) | C12—C17 | 1.3928 (17) |
S1—C1 | 1.7367 (13) | C12—C13 | 1.3978 (19) |
S1—C7 | 1.7644 (12) | C13—C14 | 1.378 (2) |
N1—C6 | 1.3854 (16) | C14—C15 | 1.380 (3) |
N1—C7 | 1.3150 (15) | C15—C16 | 1.376 (2) |
N2—C7 | 1.3558 (15) | C16—C17 | 1.389 (2) |
N2—C8 | 1.3205 (15) | C2—H2 | 0.9300 |
N3—C8 | 1.3471 (15) | C3—H3A | 0.9300 |
N3—C9 | 1.4508 (19) | C4—H4 | 0.9300 |
N4—C8 | 1.3492 (16) | C5—H5 | 0.9300 |
N4—C10 | 1.4543 (17) | C9—H9A | 0.9700 |
N4—C11 | 1.4495 (16) | C9—H9B | 0.9700 |
N3—H3 | 0.8600 | C10—H10A | 0.9700 |
C1—C6 | 1.4025 (17) | C10—H10B | 0.9700 |
C1—C2 | 1.394 (2) | C11—H11A | 0.9700 |
C2—C3 | 1.384 (2) | C11—H11B | 0.9700 |
C3—C4 | 1.390 (2) | C13—H13 | 0.9300 |
C4—C5 | 1.381 (2) | C14—H14 | 0.9300 |
C5—C6 | 1.3950 (18) | C15—H15 | 0.9300 |
C9—C10 | 1.5267 (19) | C16—H16 | 0.9300 |
C11—C12 | 1.5115 (18) | | |
| | | |
Cl1···C9i | 3.5602 (16) | C7···H3 | 2.6600 |
Cl1···H11B | 2.6100 | C12···H10A | 2.9500 |
Cl1···H3ii | 2.9000 | C14···H3Aiv | 3.0600 |
S1···N1 | 2.6052 (11) | C17···H3ii | 2.9400 |
S1···C16iii | 3.6018 (15) | H3···N1 | 2.1800 |
S1···S1iv | 3.7035 (5) | H3···C7 | 2.6600 |
S1···H16iii | 3.1400 | H3···Cl1x | 2.9000 |
S1···H9Av | 3.1900 | H3···C17x | 2.9400 |
S1···H10Bv | 3.1500 | H3A···C14iv | 3.0600 |
N1···S1 | 2.6052 (11) | H3A···H14iv | 2.5300 |
N1···N3 | 2.7006 (16) | H4···H11Axi | 2.4900 |
N3···N1 | 2.7006 (16) | H5···H16x | 2.4800 |
N1···H3 | 2.1800 | H9A···S1v | 3.1900 |
N1···H15vi | 2.8300 | H10A···C2ix | 3.0600 |
N2···H11A | 2.5000 | H10A···C12 | 2.9500 |
N2···H13 | 2.9200 | H10B···S1v | 3.1500 |
C3···C3vii | 3.509 (2) | H11A···N2 | 2.5000 |
C8···C13 | 3.5795 (18) | H11A···H13 | 2.5400 |
C8···C8v | 3.5927 (15) | H11A···H4xii | 2.4900 |
C9···Cl1i | 3.5602 (16) | H11B···Cl1 | 2.6100 |
C13···C8 | 3.5795 (18) | H11B···C5v | 3.0900 |
C13···C14vi | 3.575 (2) | H11B···C6v | 3.0700 |
C14···C13vi | 3.575 (2) | H13···N2 | 2.9200 |
C15···C15viii | 3.370 (2) | H13···H11A | 2.5400 |
C16···S1ix | 3.6018 (15) | H14···H3Aiv | 2.5300 |
C2···H10Aiii | 3.0600 | H15···N1vi | 2.8300 |
C5···H16x | 2.9900 | H15···C7vi | 2.8800 |
C5···H11Bv | 3.0900 | H16···S1ix | 3.1400 |
C6···H11Bv | 3.0700 | H16···C5ii | 2.9900 |
C7···H15vi | 2.8800 | H16···H5ii | 2.4800 |
| | | |
C1—S1—C7 | 89.50 (6) | C12—C17—C16 | 121.84 (13) |
C6—N1—C7 | 110.72 (10) | Cl1—C17—C12 | 119.90 (10) |
C7—N2—C8 | 118.18 (10) | Cl1—C17—C16 | 118.25 (11) |
C8—N3—C9 | 111.39 (10) | C1—C2—H2 | 121.00 |
C8—N4—C10 | 111.66 (10) | C3—C2—H2 | 121.00 |
C8—N4—C11 | 124.43 (11) | C2—C3—H3A | 119.00 |
C10—N4—C11 | 122.68 (10) | C4—C3—H3A | 119.00 |
C9—N3—H3 | 124.00 | C3—C4—H4 | 120.00 |
C8—N3—H3 | 124.00 | C5—C4—H4 | 120.00 |
C2—C1—C6 | 121.44 (12) | C4—C5—H5 | 120.00 |
S1—C1—C6 | 109.01 (9) | C6—C5—H5 | 120.00 |
S1—C1—C2 | 129.55 (10) | N3—C9—H9A | 111.00 |
C1—C2—C3 | 117.95 (14) | N3—C9—H9B | 111.00 |
C2—C3—C4 | 121.22 (14) | C10—C9—H9A | 111.00 |
C3—C4—C5 | 120.74 (14) | C10—C9—H9B | 111.00 |
C4—C5—C6 | 119.31 (13) | H9A—C9—H9B | 109.00 |
C1—C6—C5 | 119.34 (11) | N4—C10—H10A | 111.00 |
N1—C6—C1 | 115.97 (11) | N4—C10—H10B | 111.00 |
N1—C6—C5 | 124.70 (11) | C9—C10—H10A | 111.00 |
S1—C7—N1 | 114.78 (9) | C9—C10—H10B | 111.00 |
S1—C7—N2 | 115.65 (8) | H10A—C10—H10B | 109.00 |
N1—C7—N2 | 129.56 (11) | N4—C11—H11A | 109.00 |
N2—C8—N3 | 129.05 (11) | N4—C11—H11B | 109.00 |
N3—C8—N4 | 109.13 (10) | C12—C11—H11A | 109.00 |
N2—C8—N4 | 121.82 (10) | C12—C11—H11B | 109.00 |
N3—C9—C10 | 103.00 (11) | H11A—C11—H11B | 108.00 |
N4—C10—C9 | 102.44 (10) | C12—C13—H13 | 119.00 |
N4—C11—C12 | 112.19 (10) | C14—C13—H13 | 119.00 |
C13—C12—C17 | 116.90 (12) | C13—C14—H14 | 120.00 |
C11—C12—C13 | 119.15 (11) | C15—C14—H14 | 120.00 |
C11—C12—C17 | 123.94 (11) | C14—C15—H15 | 120.00 |
C12—C13—C14 | 121.59 (14) | C16—C15—H15 | 120.00 |
C13—C14—C15 | 120.11 (14) | C15—C16—H16 | 120.00 |
C14—C15—C16 | 119.96 (15) | C17—C16—H16 | 120.00 |
C15—C16—C17 | 119.59 (14) | | |
| | | |
C7—S1—C1—C2 | −178.77 (14) | S1—C1—C2—C3 | −179.98 (12) |
C7—S1—C1—C6 | 0.91 (9) | S1—C1—C6—N1 | −0.51 (14) |
C1—S1—C7—N2 | 177.99 (10) | C2—C1—C6—C5 | −0.29 (19) |
C1—S1—C7—N1 | −1.23 (10) | C6—C1—C2—C3 | 0.4 (2) |
C6—N1—C7—N2 | −177.95 (12) | C2—C1—C6—N1 | 179.20 (12) |
C7—N1—C6—C5 | 179.07 (12) | C1—C2—C3—C4 | −0.1 (2) |
C7—N1—C6—C1 | −0.39 (15) | C2—C3—C4—C5 | −0.3 (3) |
C6—N1—C7—S1 | 1.13 (13) | C3—C4—C5—C6 | 0.3 (2) |
C8—N2—C7—S1 | 175.14 (9) | C4—C5—C6—N1 | −179.51 (13) |
C8—N2—C7—N1 | −5.8 (2) | C4—C5—C6—C1 | −0.07 (19) |
C7—N2—C8—N3 | −6.73 (19) | N3—C9—C10—N4 | −14.79 (14) |
C7—N2—C8—N4 | 174.34 (11) | N4—C11—C12—C13 | −74.15 (15) |
C9—N3—C8—N2 | 174.53 (12) | N4—C11—C12—C17 | 104.45 (13) |
C9—N3—C8—N4 | −6.44 (15) | C11—C12—C13—C14 | 178.12 (13) |
C8—N3—C9—C10 | 13.63 (15) | C17—C12—C13—C14 | −0.6 (2) |
C11—N4—C8—N2 | 7.26 (19) | C11—C12—C17—Cl1 | 0.68 (16) |
C10—N4—C8—N3 | −4.33 (14) | C11—C12—C17—C16 | −178.92 (12) |
C8—N4—C11—C12 | 98.08 (14) | C13—C12—C17—Cl1 | 179.31 (10) |
C10—N4—C11—C12 | −68.13 (16) | C13—C12—C17—C16 | −0.29 (18) |
C10—N4—C8—N2 | 174.79 (11) | C12—C13—C14—C15 | 0.7 (2) |
C11—N4—C8—N3 | −171.86 (12) | C13—C14—C15—C16 | 0.1 (2) |
C11—N4—C10—C9 | −179.90 (12) | C14—C15—C16—C17 | −0.9 (2) |
C8—N4—C10—C9 | 12.31 (14) | C15—C16—C17—Cl1 | −178.56 (11) |
S1—C1—C6—C5 | 180.00 (9) | C15—C16—C17—C12 | 1.1 (2) |
Symmetry codes: (i) −x+1/2, −y−1/2, −z+2; (ii) x, −y, z+1/2; (iii) x, y+1, z; (iv) −x, −y+1, −z+2; (v) −x+1/2, −y+1/2, −z+2; (vi) −x, −y, −z+2; (vii) −x, y, −z+3/2; (viii) −x, y, −z+5/2; (ix) x, y−1, z; (x) x, −y, z−1/2; (xi) x, −y+1, z−1/2; (xii) x, −y+1, z+1/2. |