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In the crystal structure of the title compound, 2,4-diamino-5-(4-chloro­phen­yl)-6-ethyl­pyrimidin-1-ium 3-chloro­benzoate, C12H14ClN4+·C7H4ClO2, the cation inter­acts with the carboxyl­ate group of the anion through a pair of N—H...O hydrogen bonds, forming a cyclic hydrogen-bonded motif [graph-set notation R22(8)]. This motif self-assembles through a complementary DDAA array of quadruple hydrogen bonds. The pyrimethamine cations are paired about inversion centers through N—H...N hydrogen bonds involving a pyrimidine N atom and the 4-amino group of the pyrimethamine cations. Concurrent with hydrogen bonding are Cl...Cl and sandwich stacking inter­actions.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806030315/xu2096sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536806030315/xu2096Isup2.hkl
Contains datablock I

CCDC reference: 256151

Key indicators

  • Single-crystal X-ray study
  • T = 170 K
  • Mean [sigma](C-C) = 0.004 Å
  • R factor = 0.044
  • wR factor = 0.122
  • Data-to-parameter ratio = 14.8

checkCIF/PLATON results

No syntax errors found



Alert level C PLAT230_ALERT_2_C Hirshfeld Test Diff for O2 - C15 .. 5.11 su PLAT420_ALERT_2_C D-H Without Acceptor N4 - H4B ... ? PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 1 C12 H14 Cl N4
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Computing details top

Data collection: CrysAlis CCD (Oxford Diffraction, 2004); cell refinement: CrysAlis RED (Oxford Diffraction, 2004); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: PLATON (Spek, 2003}.

2,4-diamino-5-(4-chlorophenyl)-6-ethylpyrimidin-1-ium 3-chlorobenzoate top
Crystal data top
C12H14ClN4+·C7H4ClO2Z = 2
Mr = 405.27F(000) = 420
Triclinic, P1Dx = 1.444 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.139 (2) ÅCell parameters from 2044 reflections
b = 10.337 (2) Åθ = 3.1–26.1°
c = 11.121 (2) ŵ = 0.37 mm1
α = 65.90 (3)°T = 170 K
β = 82.80 (3)°Prism, colourless
γ = 76.45 (3)°0.4 × 0.3 × 0.1 mm
V = 931.8 (4) Å3
Data collection top
Kuma KM-4-CCD κ-geometry
diffractometer
3616 independent reflections
Radiation source: fine-focus sealed tube2359 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
ω scansθmax = 26.1°, θmin = 3.1°
Absorption correction: numerical
(CrysAlis RED; Clark & Reid, 1995; Oxford Diffraction, 2004)
h = 119
Tmin = 0.770, Tmax = 0.924k = 1212
7913 measured reflectionsl = 1213
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H-atom parameters constrained
S = 0.97 w = 1/[σ2(Fo2) + (0.0619P)2]
where P = (Fo2 + 2Fc2)/3
3616 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = 0.26 e Å3
Special details top

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles

Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl10.77459 (8)0.74814 (7)0.65211 (8)0.0471 (3)
N10.6618 (2)0.1332 (2)0.26512 (19)0.0269 (7)
N20.5194 (2)0.3155 (2)0.0992 (2)0.0311 (7)
N30.5327 (2)0.0799 (2)0.12575 (19)0.0248 (7)
N40.5461 (2)0.1560 (2)0.1608 (2)0.0302 (7)
C20.5702 (3)0.1749 (3)0.1636 (2)0.0247 (8)
C40.5780 (3)0.0617 (2)0.2018 (2)0.0236 (8)
C50.6600 (2)0.1108 (2)0.3193 (2)0.0233 (8)
C60.7077 (3)0.0093 (3)0.3440 (2)0.0251 (8)
C70.8112 (3)0.0420 (3)0.4525 (3)0.0327 (9)
C80.7296 (3)0.0655 (3)0.5859 (3)0.0460 (11)
C90.6923 (3)0.2685 (2)0.4057 (2)0.0245 (8)
C100.5939 (3)0.3272 (3)0.5105 (2)0.0295 (8)
C110.6181 (3)0.4734 (3)0.5874 (3)0.0313 (8)
C120.7421 (3)0.5629 (3)0.5590 (3)0.0294 (8)
C130.8415 (3)0.5086 (3)0.4559 (3)0.0299 (8)
C140.8170 (3)0.3615 (3)0.3805 (2)0.0282 (8)
Cl20.93722 (9)0.94582 (8)0.11886 (7)0.0502 (3)
O10.80158 (19)0.33299 (18)0.25822 (18)0.0381 (6)
O20.63366 (18)0.52881 (17)0.14315 (16)0.0323 (6)
C150.7665 (3)0.4624 (3)0.1799 (2)0.0296 (9)
C160.8918 (3)0.5475 (3)0.1271 (2)0.0258 (8)
C170.8624 (3)0.6897 (3)0.0353 (2)0.0275 (8)
C180.9749 (3)0.7684 (3)0.0036 (2)0.0309 (9)
C191.1169 (3)0.7081 (3)0.0459 (3)0.0372 (10)
C201.1480 (3)0.5662 (3)0.1333 (3)0.0367 (10)
C211.0369 (3)0.4844 (3)0.1737 (2)0.0310 (8)
H10.691700.197900.280300.0320*
H2A0.462500.345400.033200.0370*
H2B0.543300.376700.123400.0370*
H4A0.498900.125600.089100.0360*
H4B0.572800.247400.206100.0360*
H7A0.862800.037500.428600.0390*
H7B0.886800.128200.460500.0390*
H8A0.651900.017800.578100.0690*
H8B0.800100.079800.649500.0690*
H8C0.685500.149300.613900.0690*
H100.510000.266300.528700.0350*
H110.552000.510900.657200.0380*
H130.924300.570500.437300.0360*
H140.884800.324400.312100.0340*
H170.767300.731500.000300.0330*
H191.191200.763000.020500.0450*
H201.244300.524500.165600.0440*
H211.059100.387900.231700.0370*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl10.0595 (5)0.0213 (4)0.0498 (5)0.0079 (3)0.0113 (4)0.0009 (3)
N10.0345 (11)0.0220 (11)0.0271 (12)0.0088 (9)0.0086 (10)0.0088 (10)
N20.0371 (12)0.0219 (11)0.0348 (13)0.0059 (9)0.0144 (10)0.0080 (10)
N30.0275 (11)0.0219 (11)0.0250 (12)0.0074 (9)0.0041 (9)0.0071 (9)
N40.0423 (12)0.0223 (11)0.0273 (12)0.0076 (9)0.0127 (10)0.0072 (10)
C20.0252 (13)0.0249 (13)0.0223 (14)0.0072 (10)0.0004 (11)0.0066 (11)
C40.0252 (13)0.0228 (13)0.0240 (14)0.0076 (10)0.0008 (11)0.0090 (11)
C50.0267 (13)0.0216 (13)0.0206 (14)0.0043 (10)0.0023 (11)0.0072 (11)
C60.0282 (13)0.0253 (13)0.0216 (14)0.0065 (10)0.0015 (11)0.0081 (11)
C70.0387 (15)0.0246 (14)0.0359 (16)0.0060 (11)0.0122 (12)0.0101 (12)
C80.0587 (19)0.0499 (19)0.0323 (18)0.0084 (15)0.0113 (14)0.0176 (15)
C90.0319 (13)0.0217 (13)0.0207 (14)0.0062 (10)0.0096 (11)0.0062 (11)
C100.0325 (14)0.0267 (14)0.0279 (15)0.0040 (11)0.0026 (12)0.0098 (12)
C110.0354 (15)0.0297 (14)0.0264 (15)0.0116 (12)0.0005 (12)0.0060 (12)
C120.0408 (15)0.0183 (13)0.0279 (15)0.0058 (11)0.0140 (12)0.0044 (11)
C130.0339 (14)0.0263 (14)0.0302 (15)0.0008 (11)0.0070 (12)0.0130 (12)
C140.0342 (14)0.0271 (14)0.0236 (14)0.0082 (11)0.0039 (11)0.0083 (12)
Cl20.0711 (5)0.0346 (4)0.0417 (5)0.0234 (4)0.0111 (4)0.0024 (3)
O10.0519 (11)0.0224 (10)0.0400 (12)0.0112 (8)0.0178 (9)0.0057 (9)
O20.0340 (10)0.0286 (10)0.0333 (11)0.0072 (8)0.0081 (8)0.0088 (9)
C150.0438 (16)0.0259 (14)0.0244 (15)0.0094 (12)0.0062 (12)0.0125 (12)
C160.0345 (14)0.0247 (13)0.0229 (14)0.0051 (11)0.0039 (11)0.0136 (12)
C170.0326 (14)0.0271 (14)0.0258 (15)0.0057 (11)0.0038 (11)0.0129 (12)
C180.0411 (16)0.0294 (14)0.0250 (15)0.0116 (12)0.0009 (12)0.0110 (12)
C190.0367 (16)0.0465 (18)0.0334 (17)0.0170 (13)0.0036 (13)0.0174 (14)
C200.0310 (15)0.0487 (18)0.0349 (17)0.0044 (13)0.0038 (13)0.0220 (15)
C210.0387 (15)0.0264 (14)0.0276 (15)0.0001 (11)0.0052 (12)0.0127 (12)
Geometric parameters (Å, º) top
Cl1—C121.737 (3)C11—C121.378 (4)
Cl2—C181.738 (3)C12—C131.381 (4)
O1—C151.252 (3)C13—C141.383 (4)
O2—C151.272 (3)C7—H7A0.9696
N1—C61.365 (4)C7—H7B0.9703
N1—C21.353 (3)C8—H8C0.9600
N2—C21.326 (4)C8—H8A0.9598
N3—C21.338 (4)C8—H8B0.9599
N3—C41.350 (3)C10—H100.9296
N4—C41.331 (3)C11—H110.9296
N1—H10.8602C13—H130.9310
N2—H2A0.8601C14—H140.9298
N2—H2B0.8596C15—C161.520 (4)
N4—H4A0.8595C16—C171.390 (4)
N4—H4B0.8603C16—C211.394 (4)
C4—C51.433 (3)C17—C181.378 (4)
C5—C91.495 (3)C18—C191.377 (4)
C5—C61.359 (4)C19—C201.374 (5)
C6—C71.506 (4)C20—C211.388 (4)
C7—C81.526 (4)C17—H170.9301
C9—C141.389 (4)C19—H190.9298
C9—C101.397 (3)C20—H200.9297
C10—C111.378 (4)C21—H210.9299
Cl1···Cl2i3.2969 (13)C21···C17xi3.405 (4)
Cl1···N4ii3.471 (2)C21···C13vi3.430 (4)
Cl2···Cl2iii3.6526 (14)C21···C16xi3.461 (3)
Cl2···Cl1iv3.2969 (13)C2···H19xi2.7968
Cl2···H8Bv3.1303C4···H4Aix3.0863
O1···C13vi3.327 (4)C5···H8Aviii3.0245
O1···N12.643 (3)C9···H4B2.5036
O2···N2vii2.856 (3)C9···H8C3.0234
O2···N22.877 (3)C9···H7B2.7992
O2···N4vi3.249 (3)C10···H8C2.8451
O1···H2B2.8032C11···H20xiii2.9623
O1···H212.5027C13···H13xii2.9851
O1···H11.8259C14···H13xii3.0738
O1···H7A2.8234C14···H4B2.8490
O2···H2B2.0343C15···H2B2.6388
O2···H4Bvi2.6025C15···H2Avii3.0648
O2···H172.5298C15···H12.7168
O2···H11viii2.5904C16···H14vi2.8535
O2···H2Avii2.0306C17···H14vi3.0523
N1···O12.643 (3)C21···H14vi2.9779
N2···O22.877 (3)C21···H13vi2.8519
N2···O2vii2.856 (3)H1···O11.8259
N2···C153.382 (4)H1···H2B2.2550
N3···N4ix3.091 (3)H1···H7A2.2611
N4···C17x3.390 (4)H1···C152.7168
N4···C143.380 (3)H2A···O2vii2.0306
N4···Cl1ii3.471 (2)H2A···H17vii2.5301
N4···O2x3.249 (3)H2A···C15vii3.0648
N4···N3ix3.091 (3)H2B···O12.8032
N2···H19xi2.9016H2B···H12.2550
N3···H4Aix2.2810H2B···C152.6388
N4···H17x2.8834H2B···O22.0343
C2···C19xi3.566 (4)H4A···N3ix2.2810
C8···C93.532 (4)H4A···H4Aix2.5461
C9···C83.532 (4)H4A···C4ix3.0863
C11···C11ii3.350 (4)H4B···C92.5036
C13···C14xii3.510 (4)H4B···C142.8490
C13···C15x3.370 (4)H4B···O2x2.6025
C13···C21x3.430 (4)H7A···O12.8234
C13···C13xii3.238 (4)H7A···H12.2611
C13···C16x3.448 (4)H7B···C92.7992
C13···O1x3.327 (4)H8A···H10viii2.5232
C14···N43.380 (3)H8A···C5viii3.0245
C14···C13xii3.510 (4)H8B···Cl2xiv3.1303
C14···C15x3.532 (4)H8C···C93.0234
C14···C21x3.493 (4)H8C···C102.8451
C14···C16x3.267 (4)H10···H8Aviii2.5232
C15···C14vi3.532 (4)H11···O2viii2.5904
C15···C13vi3.370 (4)H13···C14xii3.0738
C15···C19xi3.551 (4)H13···C21x2.8519
C15···N23.382 (4)H13···C13xii2.9851
C15···C20xi3.589 (4)H14···C17x3.0523
C16···C16xi3.581 (4)H14···C21x2.9779
C16···C21xi3.461 (3)H14···C16x2.8535
C16···C13vi3.448 (4)H17···O22.5298
C16···C14vi3.267 (4)H17···N4vi2.8834
C17···N4vi3.390 (4)H17···H2Avii2.5301
C17···C21xi3.405 (4)H19···N2xi2.9016
C19···C15xi3.551 (4)H19···C2xi2.7968
C19···C2xi3.566 (4)H20···C11xiii2.9623
C20···C15xi3.589 (4)H21···O12.5027
C21···C14vi3.493 (4)
C2—N1—C6121.4 (2)H7A—C7—H7B107.74
C2—N3—C4116.9 (2)C7—C8—H8A109.46
C2—N1—H1119.30C7—C8—H8B109.45
C6—N1—H1119.28C7—C8—H8C109.44
C2—N2—H2A119.93H8A—C8—H8B109.50
C2—N2—H2B120.03H8A—C8—H8C109.47
H2A—N2—H2B120.04H8B—C8—H8C109.51
H4A—N4—H4B120.01C9—C10—H10119.25
C4—N4—H4A120.03C11—C10—H10119.22
C4—N4—H4B119.96C10—C11—H11120.60
N1—C2—N3122.3 (3)C12—C11—H11120.62
N2—C2—N3119.9 (2)C12—C13—H13120.30
N1—C2—N2117.8 (3)C14—C13—H13120.27
N3—C4—N4116.7 (2)C9—C14—H14119.60
N3—C4—C5122.6 (2)C13—C14—H14119.62
N4—C4—C5120.6 (2)O1—C15—O2125.0 (3)
C4—C5—C6117.1 (2)O1—C15—C16117.5 (2)
C4—C5—C9119.44 (19)O2—C15—C16117.5 (2)
C6—C5—C9123.5 (2)C15—C16—C17120.7 (3)
N1—C6—C5118.9 (2)C15—C16—C21119.9 (2)
N1—C6—C7116.4 (3)C17—C16—C21119.4 (3)
C5—C6—C7124.7 (3)C16—C17—C18119.7 (3)
C6—C7—C8113.3 (2)Cl2—C18—C17119.3 (2)
C5—C9—C10120.7 (2)Cl2—C18—C19119.6 (2)
C5—C9—C14121.0 (2)C17—C18—C19121.1 (3)
C10—C9—C14118.2 (2)C18—C19—C20119.5 (3)
C9—C10—C11121.5 (3)C19—C20—C21120.5 (3)
C10—C11—C12118.8 (3)C16—C21—C20119.7 (3)
Cl1—C12—C11120.1 (2)C16—C17—H17120.18
Cl1—C12—C13118.7 (2)C18—C17—H17120.16
C11—C12—C13121.2 (3)C18—C19—H19120.29
C12—C13—C14119.4 (3)C20—C19—H19120.20
C9—C14—C13120.8 (2)C19—C20—H20119.78
C6—C7—H7A108.93C21—C20—H20119.68
C6—C7—H7B108.91C16—C21—H21120.12
C8—C7—H7A108.90C20—C21—H21120.14
C8—C7—H7B108.87
C6—N1—C2—N2173.9 (2)C14—C9—C10—C110.3 (4)
C6—N1—C2—N37.4 (4)C5—C9—C14—C13176.1 (2)
C2—N1—C6—C50.1 (4)C10—C9—C14—C131.1 (4)
C2—N1—C6—C7179.2 (2)C9—C10—C11—C120.3 (4)
C4—N3—C2—N16.5 (4)C10—C11—C12—C130.2 (5)
C4—N3—C2—N2174.8 (2)C10—C11—C12—Cl1179.0 (2)
C2—N3—C4—N4177.2 (2)C11—C12—C13—C140.6 (5)
C2—N3—C4—C51.1 (3)Cl1—C12—C13—C14179.8 (2)
N4—C4—C5—C98.0 (3)C12—C13—C14—C91.3 (4)
N3—C4—C5—C67.9 (3)O1—C15—C16—C17177.1 (2)
N3—C4—C5—C9173.7 (2)O1—C15—C16—C214.8 (4)
N4—C4—C5—C6170.4 (2)O2—C15—C16—C174.2 (4)
C9—C5—C6—N1174.6 (2)O2—C15—C16—C21173.9 (2)
C9—C5—C6—C76.3 (4)C15—C16—C17—C18175.0 (2)
C4—C5—C9—C1092.0 (3)C21—C16—C17—C183.1 (4)
C4—C5—C6—C7172.0 (2)C15—C16—C21—C20174.8 (3)
C4—C5—C6—N17.0 (3)C17—C16—C21—C203.3 (4)
C4—C5—C9—C1485.1 (3)C16—C17—C18—Cl2179.8 (2)
C6—C5—C9—C1089.7 (3)C16—C17—C18—C190.7 (4)
C6—C5—C9—C1493.2 (3)Cl2—C18—C19—C20177.6 (2)
C5—C6—C7—C883.2 (4)C17—C18—C19—C201.4 (4)
N1—C6—C7—C897.7 (3)C18—C19—C20—C211.2 (5)
C5—C9—C10—C11176.9 (2)C19—C20—C21—C161.2 (4)
Symmetry codes: (i) x, y2, z+1; (ii) x+1, y1, z+1; (iii) x+2, y+2, z; (iv) x, y+2, z1; (v) x, y+1, z1; (vi) x, y+1, z; (vii) x+1, y+1, z; (viii) x+1, y, z+1; (ix) x+1, y, z; (x) x, y1, z; (xi) x+2, y+1, z; (xii) x+2, y1, z+1; (xiii) x+2, y, z+1; (xiv) x, y1, z+1.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.861.832.643 (3)158
N2—H2A···O2vii0.862.032.856 (3)161
N2—H2B···O20.862.032.877 (3)167
N4—H4A···N3ix0.862.283.091 (3)157
C11—H11···O2viii0.932.593.477 (4)160
Symmetry codes: (vii) x+1, y+1, z; (viii) x+1, y, z+1; (ix) x+1, y, z.
 

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