The diamine ligand in the title compound, [PtCl
2(C
6H
14N
2O)], chelates to platinum, which adopts a square-planar geometry. Adjacent molecules are linked by an N—H
O hydrogen bond, forming a chain running along [101].
Supporting information
CCDC reference: 624534
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.012 Å
- R factor = 0.029
- wR factor = 0.067
- Data-to-parameter ratio = 20.6
checkCIF/PLATON results
No syntax errors found
Alert level A
ABSTM02_ALERT_3_A Crystal and compound unsuitable for non-numerical
corrections. Product of mu and tmid > 3.0
Value of mu given = 14.163 tmid = 0.250
| Author Response: Although the mu*d is larger than 3, the structure
has refined smoothly
with the multi-scan absorption correction. There are no large
peaks/holes in the final difference Fourier, and the ORTEP looks alright.
Moreover, the crystal did not have clearly defined faces for a
face-indexing absorption correction
|
PLAT065_ALERT_3_A Crystal Requires Numerical Correction mu*tmid .. 3.54
| Author Response: Although the mu*d is larger than 3, the structure
has refined smoothly
with the multi-scan absorption correction. There are no large
peaks/holes in the final difference Fourier, and the ORTEP looks alright.
Moreover, the crystal did not have clearly defined faces for a
face-indexing absorption correction
|
Alert level C
PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
PLAT342_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 12
2 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
3 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: APEXII (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: SHELXL97.
cis-Dichloro(2-morpholinoethylamine-
κ2N,
N')platinum(II)
top
Crystal data top
[PtCl2(C6H14N2O)] | F(000) = 1472 |
Mr = 396.18 | Dx = 2.566 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1798 reflections |
a = 16.365 (2) Å | θ = 2.6–24.2° |
b = 12.584 (2) Å | µ = 14.16 mm−1 |
c = 10.775 (2) Å | T = 295 K |
β = 112.459 (2)° | Block, yellow |
V = 2050.7 (6) Å3 | 0.28 × 0.25 × 0.20 mm |
Z = 8 | |
Data collection top
Bruker APEX-II area-detector diffractometer | 2245 independent reflections |
Radiation source: fine-focus sealed tube | 1651 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
φ and ω scans | θmax = 27.3°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −20→18 |
Tmin = 0.027, Tmax = 0.059 | k = −9→16 |
5839 measured reflections | l = −13→13 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.067 | H-atom parameters constrained |
S = 0.96 | w = 1/[σ2(Fo2) + (0.0282P)2] where P = (Fo2 + 2Fc2)/3 |
2245 reflections | (Δ/σ)max = 0.001 |
109 parameters | Δρmax = 0.72 e Å−3 |
0 restraints | Δρmin = −1.94 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Pt1 | 0.20101 (2) | 0.41848 (2) | 0.56139 (3) | 0.0308 (1) | |
Cl1 | 0.1319 (2) | 0.4557 (2) | 0.3358 (2) | 0.0626 (7) | |
Cl2 | 0.3128 (1) | 0.5375 (2) | 0.5845 (2) | 0.0468 (5) | |
O1 | −0.0557 (3) | 0.1973 (4) | 0.3972 (6) | 0.052 (2) | |
N1 | 0.2598 (4) | 0.3789 (5) | 0.7572 (6) | 0.039 (2) | |
N2 | 0.1049 (4) | 0.3097 (5) | 0.5582 (6) | 0.033 (1) | |
C1 | 0.2232 (5) | 0.2773 (7) | 0.7773 (9) | 0.060 (3) | |
C2 | 0.1286 (5) | 0.2777 (7) | 0.7034 (8) | 0.054 (2) | |
C3 | 0.0149 (5) | 0.3572 (6) | 0.5060 (8) | 0.045 (2) | |
C4 | −0.0564 (5) | 0.2777 (7) | 0.4887 (9) | 0.054 (2) | |
C5 | 0.0267 (5) | 0.1420 (6) | 0.4474 (10) | 0.054 (2) | |
C6 | 0.1027 (5) | 0.2179 (6) | 0.4697 (9) | 0.047 (2) | |
H11 | 0.3160 | 0.3734 | 0.7794 | 0.047* | |
H12 | 0.2500 | 0.4272 | 0.8063 | 0.047* | |
H1a | 0.2498 | 0.2196 | 0.7460 | 0.073* | |
H1b | 0.2363 | 0.2666 | 0.8721 | 0.073* | |
H2a | 0.1014 | 0.3269 | 0.7454 | 0.065* | |
H2b | 0.1052 | 0.2073 | 0.7066 | 0.065* | |
H3a | 0.0043 | 0.3905 | 0.4201 | 0.054* | |
H3b | 0.0122 | 0.4121 | 0.5675 | 0.054* | |
H4a | −0.0477 | 0.2459 | 0.5749 | 0.064* | |
H4b | −0.1134 | 0.3131 | 0.4556 | 0.064* | |
H5a | 0.0269 | 0.0876 | 0.3838 | 0.065* | |
H5b | 0.0340 | 0.1075 | 0.5315 | 0.065* | |
H6a | 0.1578 | 0.1789 | 0.5091 | 0.056* | |
H6b | 0.0990 | 0.2447 | 0.3833 | 0.056* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Pt1 | 0.0368 (2) | 0.0253 (2) | 0.0336 (2) | −0.0005 (1) | 0.0173 (1) | −0.0008 (1) |
Cl1 | 0.072 (2) | 0.071 (2) | 0.037 (1) | −0.027 (1) | 0.012 (1) | 0.014 (1) |
Cl2 | 0.052 (1) | 0.037 (1) | 0.053 (1) | −0.011 (1) | 0.022 (1) | −0.007 (1) |
O1 | 0.041 (3) | 0.051 (4) | 0.064 (4) | −0.010 (3) | 0.022 (3) | −0.016 (3) |
N1 | 0.040 (3) | 0.030 (3) | 0.047 (4) | 0.008 (3) | 0.016 (3) | −0.003 (3) |
N2 | 0.037 (3) | 0.027 (3) | 0.037 (4) | −0.002 (3) | 0.016 (3) | −0.001 (3) |
C1 | 0.067 (6) | 0.053 (6) | 0.054 (6) | −0.019 (5) | 0.014 (5) | 0.016 (5) |
C2 | 0.061 (5) | 0.061 (6) | 0.043 (5) | −0.004 (5) | 0.022 (4) | 0.008 (4) |
C3 | 0.039 (4) | 0.043 (5) | 0.049 (5) | 0.002 (4) | 0.012 (4) | −0.009 (4) |
C4 | 0.047 (5) | 0.055 (6) | 0.063 (6) | −0.013 (4) | 0.026 (4) | −0.019 (5) |
C5 | 0.063 (5) | 0.027 (5) | 0.085 (7) | −0.005 (4) | 0.041 (5) | −0.004 (5) |
C6 | 0.045 (4) | 0.028 (4) | 0.077 (6) | −0.004 (4) | 0.034 (4) | −0.002 (4) |
Geometric parameters (Å, º) top
Pt1—N1 | 2.018 (6) | N1—H12 | 0.8600 |
Pt1—N2 | 2.075 (5) | C1—H1a | 0.9700 |
Pt1—Cl1 | 2.304 (2) | C1—H1b | 0.9700 |
Pt1—Cl2 | 2.303 (2) | C2—H2a | 0.9700 |
O1—C4 | 1.417 (9) | C2—H2b | 0.9700 |
O1—C5 | 1.427 (9) | C3—H3a | 0.9700 |
N1—C1 | 1.46 (1) | C3—H3b | 0.9700 |
N2—C3 | 1.487 (8) | C4—H4a | 0.9700 |
N2—C6 | 1.490 (9) | C4—H4b | 0.9700 |
N2—C2 | 1.515 (9) | C5—H5a | 0.9700 |
C1—C2 | 1.45 (1) | C5—H5b | 0.9700 |
C3—C4 | 1.49 (1) | C6—H6a | 0.9700 |
C5—C6 | 1.51 (1) | C6—H6b | 0.9700 |
N1—H11 | 0.8600 | | |
| | | |
N1—Pt1—N2 | 84.8 (2) | N1—C1—H1b | 109.8 |
N1—Pt1—Cl1 | 177.4 (2) | H1a—C1—H1b | 108.3 |
N1—Pt1—Cl2 | 90.4 (2) | C1—C2—H2a | 109.3 |
N2—Pt1—Cl1 | 93.0 (2) | N2—C2—H2a | 109.3 |
N2—Pt1—Cl2 | 175.1 (2) | C1—C2—H2b | 109.3 |
Cl1—Pt1—Cl2 | 91.80 (9) | N2—C2—H2b | 109.3 |
C4—O1—C5 | 110.0 (6) | H2a—C2—H2b | 108.0 |
C1—N1—Pt1 | 108.2 (5) | N2—C3—H3a | 109.0 |
C3—N2—C6 | 106.9 (6) | C4—C3—H3a | 109.0 |
C3—N2—C2 | 108.8 (6) | N2—C3—H3b | 109.0 |
C6—N2—C2 | 112.9 (6) | C4—C3—H3b | 109.0 |
C3—N2—Pt1 | 112.1 (4) | H3a—C3—H3b | 107.8 |
C6—N2—Pt1 | 110.8 (4) | O1—C4—H4a | 109.5 |
C2—N2—Pt1 | 105.4 (4) | C3—C4—H4a | 109.5 |
C2—C1—N1 | 109.2 (7) | O1—C4—H4b | 109.5 |
C1—C2—N2 | 111.5 (6) | C3—C4—H4b | 109.5 |
N2—C3—C4 | 113.1 (7) | H4a—C4—H4b | 108.1 |
O1—C4—C3 | 110.6 (6) | O1—C5—H5a | 109.5 |
O1—C5—C6 | 110.7 (6) | C6—C5—H5a | 109.5 |
N2—C6—C5 | 114.1 (6) | O1—C5—H5b | 109.5 |
C1—N1—H11 | 110.1 | C6—C5—H5b | 109.5 |
Pt1—N1—H11 | 110.1 | H5a—C5—H5b | 108.1 |
C1—N1—H12 | 110.1 | N2—C6—H6a | 108.7 |
Pt1—N1—H12 | 110.1 | C5—C6—H6a | 108.7 |
H11—N1—H12 | 108.4 | N2—C6—H6b | 108.7 |
C2—C1—H1a | 109.8 | C5—C6—H6b | 108.7 |
N1—C1—H1a | 109.8 | H6a—C6—H6b | 107.6 |
C2—C1—H1b | 109.8 | | |
| | | |
N2—Pt1—N1—C1 | 18.6 (5) | Pt1—N2—C2—C1 | −33.3 (8) |
Cl2—Pt1—N1—C1 | −162.1 (5) | C6—N2—C3—C4 | 52.1 (8) |
N1—Pt1—N2—C3 | 125.5 (5) | C2—N2—C3—C4 | −70.1 (8) |
Cl1—Pt1—N2—C3 | −56.0 (5) | Pt1—N2—C3—C4 | 173.8 (5) |
N1—Pt1—N2—C6 | −115.1 (5) | C5—O1—C4—C3 | 61.4 (9) |
Cl1—Pt1—N2—C6 | 63.4 (5) | N2—C3—C4—O1 | −59.9 (9) |
N1—Pt1—N2—C2 | 7.3 (5) | C4—O1—C5—C6 | −58.6 (9) |
Cl1—Pt1—N2—C2 | −174.2 (4) | C3—N2—C6—C5 | −50.0 (9) |
Pt1—N1—C1—C2 | −42.5 (8) | C2—N2—C6—C5 | 69.7 (8) |
N1—C1—C2—N2 | 51 (1) | Pt1—N2—C6—C5 | −172.4 (6) |
C3—N2—C2—C1 | −153.7 (7) | O1—C5—C6—N2 | 55 (1) |
C6—N2—C2—C1 | 87.7 (8) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H11···O1i | 0.86 | 2.19 | 2.972 (7) | 152 |
N1—H12···Cl1ii | 0.86 | 2.55 | 3.284 (6) | 145 |
N1—H12···Cl2ii | 0.86 | 2.81 | 3.458 (7) | 134 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x, −y+1, z+1/2. |