The Gd atom in the title compound, [Gd(C33H39N11)]Cl3·3H2O, lies on a position of 32 point symmetry and exhibits a tricapped trigonal prismatic coordination geometry. A twofold rotation axis passes through the coordinated N atom and the opposite C atom of the pyridyl ring of the ligand, while a threefold rotation axis passes through the aliphatic N atom. The Cl atom and O atom of the uncoordinated water molecule both lie on twofold rotation axes.
Supporting information
CCDC reference: 629441
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.011 Å
- R factor = 0.036
- wR factor = 0.103
- Data-to-parameter ratio = 16.6
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT342_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 11
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 26.00
From the CIF: _reflns_number_total 1328
Count of symmetry unique reflns 747
Completeness (_total/calc) 177.78%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 581
Fraction of Friedel pairs measured 0.778
Are heavy atom types Z>Si present yes
PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K
PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
3 ALERT level G = General alerts; check
3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Crystal data top
[Gd(C33H39N11)]Cl3·3H2O | Dx = 1.499 Mg m−3 |
Mr = 907.40 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, R32 | Cell parameters from 1324 reflections |
Hall symbol: R 3 2" | θ = 2.1–25.7° |
a = 14.731 (2) Å | µ = 1.90 mm−1 |
c = 16.043 (3) Å | T = 293 K |
V = 3015.0 (6) Å3 | Block, red |
Z = 3 | 0.30 × 0.24 × 0.22 mm |
F(000) = 1377 | |
Data collection top
Bruker SMART APEX CCD diffractometer | 1328 independent reflections |
Radiation source: fine-focus sealed tube | 1327 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
φ and ω scans | θmax = 26.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −15→18 |
Tmin = 0.59, Tmax = 0.66 | k = −18→17 |
5619 measured reflections | l = −19→19 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
wR(F2) = 0.103 | w = 1/[σ2(Fo2) + (0.08P)2 + 1.99P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
1328 reflections | Δρmax = 0.74 e Å−3 |
80 parameters | Δρmin = −0.50 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 581 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.04 (2) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R-factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
Gd1 | 0.3333 | 0.6667 | 0.6667 | 0.0276 (2) | |
Cl1 | 0.7035 (3) | 0.6667 | 0.6667 | 0.0419 (8) | |
C1 | 0.3333 | 0.3041 (11) | 0.6667 | 0.048 (3) | |
H1 | 0.3333 | 0.2409 | 0.6667 | 0.057* | |
C2 | 0.4042 (5) | 0.3897 (5) | 0.7137 (4) | 0.0397 (13) | |
H2 | 0.4527 | 0.3824 | 0.7458 | 0.048* | |
C3 | 0.4073 (5) | 0.4856 (5) | 0.7157 (4) | 0.0412 (14) | |
C4 | 0.4716 (6) | 0.5750 (6) | 0.7677 (5) | 0.0560 (18) | |
H4 | 0.5267 | 0.5761 | 0.7970 | 0.067* | |
C5 | 0.5107 (6) | 0.7232 (6) | 0.8435 (4) | 0.0505 (17) | |
H5A | 0.5248 | 0.7932 | 0.8301 | 0.061* | |
H5B | 0.5766 | 0.7259 | 0.8554 | 0.061* | |
C6 | 0.4359 (5) | 0.6785 (6) | 0.9181 (4) | 0.0423 (14) | |
H6A | 0.4273 | 0.6107 | 0.9325 | 0.051* | |
H6B | 0.4674 | 0.7246 | 0.9656 | 0.051* | |
N1 | 0.3333 | 0.4928 (6) | 0.6667 | 0.0420 (18) | |
N2 | 0.4566 (4) | 0.6516 (4) | 0.7753 (3) | 0.0406 (12) | |
N3 | 0.3333 | 0.6667 | 0.9024 (5) | 0.0441 (16) | |
O1 | 0.5354 (5) | 0.3333 | 0.8333 | 0.0503 (16) | |
H1C | 0.5426 | 0.2796 | 0.8333 | 0.060* | 0.50 |
H1D | 0.5964 | 0.3871 | 0.8333 | 0.060* | 0.50 |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Gd1 | 0.0289 (2) | 0.0289 (2) | 0.0250 (3) | 0.01444 (11) | 0.000 | 0.000 |
Cl1 | 0.0380 (12) | 0.0377 (18) | 0.050 (2) | 0.0189 (9) | −0.0013 (7) | −0.0026 (15) |
C1 | 0.044 (9) | 0.053 (6) | 0.043 (7) | 0.022 (4) | −0.021 (8) | −0.010 (4) |
C2 | 0.038 (3) | 0.042 (3) | 0.034 (3) | 0.017 (3) | −0.011 (2) | −0.003 (3) |
C3 | 0.043 (4) | 0.043 (4) | 0.039 (3) | 0.022 (3) | 0.004 (3) | 0.006 (3) |
C4 | 0.033 (3) | 0.043 (4) | 0.060 (4) | −0.005 (4) | −0.002 (3) | −0.001 (3) |
C5 | 0.050 (4) | 0.045 (3) | 0.045 (3) | 0.015 (3) | 0.000 (3) | 0.001 (3) |
C6 | 0.037 (3) | 0.037 (3) | 0.041 (3) | 0.010 (3) | −0.004 (2) | −0.002 (3) |
N1 | 0.042 (4) | 0.041 (3) | 0.043 (4) | 0.021 (2) | −0.011 (3) | −0.0055 (16) |
N2 | 0.036 (3) | 0.036 (3) | 0.032 (2) | 0.004 (2) | −0.010 (2) | 0.005 (2) |
N3 | 0.043 (2) | 0.043 (2) | 0.046 (4) | 0.0215 (12) | 0.000 | 0.000 |
O1 | 0.042 (2) | 0.058 (4) | 0.057 (4) | 0.029 (2) | 0.0015 (17) | 0.003 (3) |
Geometric parameters (Å, º) top
Gd1—N1i | 2.562 (8) | C3—C4 | 1.442 (10) |
Gd1—N1ii | 2.562 (8) | C4—N2 | 1.259 (12) |
Gd1—N1 | 2.562 (8) | C4—H4 | 0.930 |
Gd1—N2ii | 2.606 (5) | C5—N2 | 1.450 (8) |
Gd1—N2i | 2.606 (5) | C5—C6 | 1.534 (10) |
Gd1—N2iii | 2.606 (5) | C5—H5A | 0.970 |
Gd1—N2iv | 2.606 (5) | C5—H5B | 0.970 |
Gd1—N2 | 2.606 (5) | C6—N3 | 1.454 (7) |
Gd1—N2v | 2.606 (5) | C6—H6A | 0.970 |
C1—C2 | 1.391 (10) | C6—H6B | 0.970 |
C1—C2iv | 1.391 (10) | N1—C3iv | 1.390 (8) |
C1—H1 | 0.930 | N3—C6ii | 1.454 (7) |
C2—C3 | 1.391 (10) | N3—C6i | 1.454 (7) |
C2—H2 | 0.930 | O1—H1C | 0.850 |
C3—N1 | 1.390 (8) | O1—H1D | 0.850 |
| | | |
N1i—Gd1—N1ii | 120.000 (1) | N2—Gd1—N2v | 84.6 (3) |
N1i—Gd1—N1 | 120.000 (3) | C2—C1—C2iv | 115.7 (13) |
N1ii—Gd1—N1 | 120.000 (2) | C2—C1—H1 | 122.1 |
N1i—Gd1—N2ii | 72.19 (11) | C2iv—C1—H1 | 122.1 |
N1ii—Gd1—N2ii | 64.30 (13) | C3—C2—C1 | 124.2 (8) |
N1—Gd1—N2ii | 137.69 (13) | C3—C2—H2 | 117.9 |
N1i—Gd1—N2i | 64.30 (13) | C1—C2—H2 | 117.9 |
N1ii—Gd1—N2i | 137.69 (13) | N1—C3—C2 | 115.8 (6) |
N1—Gd1—N2i | 72.19 (11) | N1—C3—C4 | 116.1 (7) |
N2ii—Gd1—N2i | 80.1 (2) | C2—C3—C4 | 127.9 (7) |
N1i—Gd1—N2iii | 64.30 (13) | N2—C4—C3 | 123.0 (8) |
N1ii—Gd1—N2iii | 72.19 (11) | N2—C4—H4 | 118.5 |
N1—Gd1—N2iii | 137.69 (13) | C3—C4—H4 | 118.5 |
N2ii—Gd1—N2iii | 84.6 (3) | N2—C5—C6 | 105.1 (6) |
N2i—Gd1—N2iii | 128.6 (3) | N2—C5—H5A | 110.7 |
N1i—Gd1—N2iv | 72.19 (11) | C6—C5—H5A | 110.7 |
N1ii—Gd1—N2iv | 137.69 (13) | N2—C5—H5B | 110.7 |
N1—Gd1—N2iv | 64.30 (13) | C6—C5—H5B | 110.7 |
N2ii—Gd1—N2iv | 144.4 (2) | H5A—C5—H5B | 108.8 |
N2i—Gd1—N2iv | 84.6 (3) | N3—C6—C5 | 113.5 (6) |
N2iii—Gd1—N2iv | 80.1 (2) | N3—C6—H6A | 108.9 |
N1i—Gd1—N2 | 137.69 (13) | C5—C6—H6A | 108.9 |
N1ii—Gd1—N2 | 72.19 (11) | N3—C6—H6B | 108.9 |
N1—Gd1—N2 | 64.30 (13) | C5—C6—H6B | 108.9 |
N2ii—Gd1—N2 | 80.1 (2) | H6A—C6—H6B | 107.7 |
N2i—Gd1—N2 | 80.1 (2) | C3iv—N1—C3 | 124.2 (9) |
N2iii—Gd1—N2 | 144.4 (2) | C3iv—N1—Gd1 | 117.9 (4) |
N2iv—Gd1—N2 | 128.6 (3) | C3—N1—Gd1 | 117.9 (4) |
N1i—Gd1—N2v | 137.69 (13) | C4—N2—C5 | 116.5 (6) |
N1ii—Gd1—N2v | 64.30 (13) | C4—N2—Gd1 | 117.0 (5) |
N1—Gd1—N2v | 72.19 (11) | C5—N2—Gd1 | 126.6 (5) |
N2ii—Gd1—N2v | 128.6 (3) | C6ii—N3—C6i | 117.1 (2) |
N2i—Gd1—N2v | 144.4 (2) | C6ii—N3—C6 | 117.1 (2) |
N2iii—Gd1—N2v | 80.1 (2) | C6i—N3—C6 | 117.1 (2) |
N2iv—Gd1—N2v | 80.1 (2) | H1C—O1—H1D | 107.5 |
Symmetry codes: (i) −x+y, −x+1, z; (ii) −y+1, x−y+1, z; (iii) y−1/3, x+1/3, −z+4/3; (iv) −x+2/3, −x+y+1/3, −z+4/3; (v) x−y+2/3, −y+4/3, −z+4/3. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1C···O1vi | 0.85 | 2.59 | 3.349 (11) | 149 |
O1—H1D···O1vii | 0.85 | 2.59 | 3.349 (11) | 149 |
C2—H2···O1 | 0.93 | 2.20 | 3.117 (8) | 167 |
Symmetry codes: (vi) −y+1, x−y, z; (vii) −x+y+1, −x+1, z. |