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The title compound, C26H26N2O7, is a thia­midine derivative. Geometric parameters are in the usual ranges. The crystal packing is stabilized by a classical N—H...O hydrogen bond, several weak C—H...O hydrogen bonds and a π–π stacking inter­action.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807007246/sg2131sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536807007246/sg2131Isup2.hkl
Contains datablock I

CCDC reference: 640480

Key indicators

  • Single-crystal X-ray study
  • T = 173 K
  • Mean [sigma](C-C) = 0.003 Å
  • R factor = 0.041
  • wR factor = 0.109
  • Data-to-parameter ratio = 9.0

checkCIF/PLATON results

No syntax errors found



Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 26.90 From the CIF: _reflns_number_total 2915 Count of symmetry unique reflns 2957 Completeness (_total/calc) 98.58% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT791_ALERT_1_G Confirm the Absolute Configuration of C2 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C4 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C5 = . S
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 0 ALERT level C = Check and explain 4 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Computing details top

Data collection: X-AREA (Stoe & Cie, 2001); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003) and XP in SHELXTL-Plus (Sheldrick, 1991); software used to prepare material for publication: SHELXL97.

2-(4-Methylbenzoyloxymethyl)-5-(5-methyl-2,4-dioxo-1,2,3,4- tetrahydropyrimidin-1-yl)tetrahydrofuran-3-yl 4-methylbenzoate top
Crystal data top
C26H26N2O7F(000) = 1008
Mr = 478.49Dx = 1.343 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 12526 reflections
a = 6.4353 (4) Åθ = 2.1–27.2°
b = 10.6994 (7) ŵ = 0.10 mm1
c = 34.373 (2) ÅT = 173 K
V = 2366.7 (3) Å3Plate, colourless
Z = 40.41 × 0.37 × 0.21 mm
Data collection top
Stoe IPDS II two-circle
diffractometer
2617 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.059
Graphite monochromatorθmax = 26.9°, θmin = 2.0°
ω scansh = 78
14101 measured reflectionsk = 1213
2915 independent reflectionsl = 3043
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109 w = 1/[σ2(Fo2) + (0.0849P)2]
where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2915 reflectionsΔρmax = 0.21 e Å3
324 parametersΔρmin = 0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.045 (4)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.2866 (2)0.72570 (12)0.42924 (5)0.0379 (4)
C20.4437 (3)0.79795 (17)0.44813 (6)0.0338 (4)
H20.40200.81410.47570.041*
C30.6392 (3)0.71751 (19)0.44741 (6)0.0365 (5)
H3A0.71770.72960.42290.044*
H3B0.73090.73690.46970.044*
C40.5538 (3)0.58601 (18)0.45023 (6)0.0334 (4)
H40.64630.52460.43680.040*
C50.3394 (3)0.59396 (17)0.43041 (6)0.0337 (4)
H50.23530.54940.44700.040*
C60.3315 (4)0.54036 (19)0.39000 (7)0.0405 (5)
H6A0.35390.44890.39080.049*
H6B0.19410.55670.37810.049*
N110.4631 (3)0.91655 (13)0.42741 (5)0.0324 (4)
C120.4756 (3)1.02564 (16)0.44913 (6)0.0318 (4)
O120.4816 (3)1.02562 (12)0.48461 (4)0.0375 (3)
N130.4792 (3)1.13292 (14)0.42732 (5)0.0324 (4)
H130.485 (5)1.203 (3)0.4407 (9)0.059 (8)*
C140.4795 (3)1.14334 (17)0.38715 (6)0.0323 (4)
O140.4801 (3)1.24594 (12)0.37144 (4)0.0385 (3)
C150.4799 (3)1.02411 (17)0.36630 (6)0.0330 (4)
C160.4717 (3)0.91799 (16)0.38728 (6)0.0330 (4)
H160.47180.84040.37380.040*
C170.4894 (4)1.02642 (19)0.32287 (6)0.0441 (5)
H17A0.49200.94060.31290.066*
H17B0.61551.07030.31450.066*
H17C0.36701.06990.31260.066*
O410.5281 (3)0.55505 (11)0.49105 (4)0.0338 (3)
C410.4922 (4)0.43202 (15)0.49730 (6)0.0323 (4)
O420.4735 (3)0.35950 (12)0.47044 (4)0.0418 (4)
C420.4825 (3)0.39654 (16)0.53873 (6)0.0316 (4)
C430.4731 (3)0.26856 (18)0.54713 (6)0.0350 (4)
H430.46960.20890.52670.042*
C440.4689 (4)0.22979 (19)0.58560 (7)0.0391 (5)
H440.46210.14300.59120.047*
C450.4743 (4)0.3149 (2)0.61605 (6)0.0411 (5)
C460.4801 (4)0.4426 (2)0.60720 (6)0.0396 (5)
H460.48030.50210.62770.048*
C470.4855 (3)0.48373 (18)0.56875 (6)0.0341 (4)
H470.49130.57060.56310.041*
C480.4740 (4)0.2689 (3)0.65764 (7)0.0534 (6)
H48A0.47980.34050.67540.080*
H48B0.59530.21530.66200.080*
H48C0.34680.22100.66250.080*
O610.4941 (3)0.60000 (13)0.36749 (4)0.0423 (4)
C610.4721 (4)0.59410 (19)0.32834 (7)0.0439 (5)
O620.3329 (4)0.53781 (18)0.31272 (6)0.0623 (5)
C620.6303 (4)0.6715 (2)0.30782 (7)0.0420 (5)
C630.8134 (4)0.7112 (2)0.32561 (7)0.0478 (6)
H630.84510.68500.35130.057*
C640.9498 (4)0.7893 (2)0.30558 (7)0.0501 (6)
H641.07500.81510.31780.060*
C650.9068 (4)0.8303 (2)0.26801 (7)0.0475 (6)
C660.7242 (5)0.7886 (2)0.25040 (7)0.0488 (6)
H660.69200.81520.22470.059*
C670.5884 (5)0.7088 (2)0.26970 (7)0.0464 (6)
H670.46680.67970.25690.056*
C681.0496 (5)0.9194 (3)0.24730 (8)0.0595 (7)
H68A1.08450.98900.26470.089*
H68B0.98040.95180.22400.089*
H68C1.17710.87550.23980.089*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0371 (7)0.0243 (6)0.0522 (9)0.0014 (6)0.0065 (7)0.0002 (6)
C20.0402 (11)0.0256 (8)0.0356 (10)0.0041 (8)0.0007 (9)0.0005 (7)
C30.0379 (11)0.0339 (9)0.0376 (11)0.0041 (9)0.0050 (9)0.0040 (8)
C40.0388 (11)0.0292 (8)0.0321 (10)0.0001 (8)0.0018 (8)0.0025 (8)
C50.0399 (11)0.0231 (8)0.0381 (11)0.0025 (8)0.0034 (9)0.0017 (7)
C60.0501 (13)0.0304 (9)0.0411 (11)0.0072 (9)0.0053 (9)0.0003 (8)
N110.0415 (9)0.0229 (6)0.0329 (8)0.0019 (7)0.0032 (8)0.0024 (6)
C120.0325 (10)0.0251 (7)0.0380 (10)0.0012 (8)0.0013 (8)0.0043 (7)
O120.0476 (9)0.0320 (6)0.0328 (7)0.0022 (7)0.0015 (7)0.0041 (5)
N130.0379 (9)0.0223 (6)0.0371 (9)0.0006 (7)0.0003 (8)0.0025 (6)
C140.0314 (9)0.0278 (8)0.0377 (10)0.0013 (8)0.0017 (8)0.0003 (7)
O140.0434 (8)0.0275 (6)0.0445 (8)0.0013 (6)0.0010 (7)0.0052 (5)
C150.0374 (10)0.0287 (8)0.0329 (10)0.0012 (9)0.0016 (8)0.0004 (7)
C160.0394 (10)0.0266 (8)0.0330 (9)0.0006 (8)0.0010 (9)0.0044 (7)
C170.0580 (14)0.0386 (9)0.0357 (11)0.0014 (11)0.0013 (10)0.0004 (8)
O410.0453 (8)0.0237 (5)0.0324 (7)0.0011 (6)0.0026 (6)0.0022 (5)
C410.0370 (11)0.0253 (8)0.0345 (10)0.0010 (8)0.0017 (8)0.0009 (7)
O420.0623 (10)0.0272 (6)0.0358 (7)0.0003 (7)0.0025 (8)0.0042 (6)
C420.0330 (10)0.0279 (8)0.0340 (10)0.0008 (8)0.0019 (8)0.0002 (7)
C430.0361 (10)0.0302 (8)0.0388 (11)0.0007 (9)0.0007 (9)0.0024 (8)
C440.0381 (11)0.0356 (9)0.0436 (11)0.0004 (9)0.0015 (9)0.0093 (8)
C450.0318 (10)0.0536 (12)0.0379 (11)0.0004 (10)0.0009 (9)0.0071 (9)
C460.0338 (10)0.0487 (11)0.0365 (10)0.0022 (10)0.0012 (9)0.0046 (9)
C470.0321 (10)0.0337 (8)0.0366 (10)0.0003 (9)0.0017 (8)0.0042 (8)
C480.0473 (13)0.0742 (16)0.0386 (11)0.0026 (14)0.0004 (11)0.0130 (11)
O610.0536 (10)0.0383 (7)0.0349 (8)0.0047 (7)0.0041 (7)0.0013 (6)
C610.0577 (14)0.0365 (9)0.0376 (11)0.0042 (11)0.0050 (11)0.0056 (9)
O620.0781 (14)0.0653 (11)0.0436 (9)0.0210 (11)0.0105 (9)0.0062 (9)
C620.0522 (13)0.0385 (10)0.0353 (11)0.0063 (10)0.0004 (10)0.0051 (9)
C630.0522 (14)0.0525 (12)0.0386 (11)0.0097 (12)0.0018 (11)0.0013 (10)
C640.0494 (14)0.0585 (13)0.0423 (12)0.0054 (12)0.0010 (11)0.0044 (11)
C650.0551 (14)0.0471 (12)0.0403 (12)0.0058 (11)0.0051 (11)0.0067 (10)
C660.0631 (16)0.0478 (12)0.0355 (11)0.0062 (12)0.0024 (11)0.0030 (10)
C670.0591 (15)0.0458 (11)0.0342 (11)0.0031 (11)0.0044 (10)0.0084 (9)
C680.0648 (18)0.0643 (15)0.0492 (14)0.0074 (14)0.0025 (13)0.0017 (12)
Geometric parameters (Å, º) top
O1—C21.429 (3)C41—C421.475 (3)
O1—C51.450 (2)C42—C471.391 (3)
C2—N111.460 (2)C42—C431.401 (2)
C2—C31.525 (3)C43—C441.386 (3)
C2—H21.0000C43—H430.9500
C3—C41.514 (3)C44—C451.388 (3)
C3—H3A0.9900C44—H440.9500
C3—H3B0.9900C45—C461.401 (3)
C4—O411.451 (2)C45—C481.512 (3)
C4—C51.541 (3)C46—C471.393 (3)
C4—H41.0000C46—H460.9500
C5—C61.504 (3)C47—H470.9500
C5—H51.0000C48—H48A0.9800
C6—O611.449 (3)C48—H48B0.9800
C6—H6A0.9900C48—H48C0.9800
C6—H6B0.9900O61—C611.355 (3)
N11—C161.381 (3)C61—O621.205 (3)
N11—C121.388 (2)C61—C621.490 (4)
C12—O121.220 (2)C62—C631.394 (4)
C12—N131.371 (2)C62—C671.396 (3)
N13—C141.385 (3)C63—C641.394 (4)
N13—H130.88 (3)C63—H630.9500
C14—O141.224 (2)C64—C651.392 (3)
C14—C151.463 (3)C64—H640.9500
C15—C161.346 (3)C65—C661.395 (4)
C15—C171.494 (3)C65—C681.504 (4)
C16—H160.9500C66—C671.390 (4)
C17—H17A0.9800C66—H660.9500
C17—H17B0.9800C67—H670.9500
C17—H17C0.9800C68—H68A0.9800
O41—C411.354 (2)C68—H68B0.9800
C41—O421.212 (2)C68—H68C0.9800
C2—O1—C5110.34 (15)O42—C41—O41121.25 (17)
O1—C2—N11108.01 (17)O42—C41—C42124.50 (16)
O1—C2—C3105.73 (15)O41—C41—C42114.24 (15)
N11—C2—C3114.32 (17)C47—C42—C43120.21 (19)
O1—C2—H2109.5C47—C42—C41122.88 (16)
N11—C2—H2109.5C43—C42—C41116.90 (17)
C3—C2—H2109.5C44—C43—C42119.35 (19)
C4—C3—C2102.95 (17)C44—C43—H43120.3
C4—C3—H3A111.2C42—C43—H43120.3
C2—C3—H3A111.2C43—C44—C45121.53 (19)
C4—C3—H3B111.2C43—C44—H44119.2
C2—C3—H3B111.2C45—C44—H44119.2
H3A—C3—H3B109.1C44—C45—C46118.5 (2)
O41—C4—C3108.38 (16)C44—C45—C48120.0 (2)
O41—C4—C5109.74 (17)C46—C45—C48121.5 (2)
C3—C4—C5104.22 (16)C47—C46—C45121.0 (2)
O41—C4—H4111.4C47—C46—H46119.5
C3—C4—H4111.4C45—C46—H46119.5
C5—C4—H4111.4C42—C47—C46119.44 (18)
O1—C5—C6109.70 (17)C42—C47—H47120.3
O1—C5—C4105.99 (15)C46—C47—H47120.3
C6—C5—C4114.68 (18)C45—C48—H48A109.5
O1—C5—H5108.8C45—C48—H48B109.5
C6—C5—H5108.8H48A—C48—H48B109.5
C4—C5—H5108.8C45—C48—H48C109.5
O61—C6—C5107.51 (16)H48A—C48—H48C109.5
O61—C6—H6A110.2H48B—C48—H48C109.5
C5—C6—H6A110.2C61—O61—C6115.74 (18)
O61—C6—H6B110.2O62—C61—O61122.9 (2)
C5—C6—H6B110.2O62—C61—C62125.1 (2)
H6A—C6—H6B108.5O61—C61—C62111.9 (2)
C16—N11—C12121.71 (15)C63—C62—C67119.2 (2)
C16—N11—C2120.02 (15)C63—C62—C61122.6 (2)
C12—N11—C2118.26 (16)C67—C62—C61118.1 (2)
O12—C12—N13123.10 (17)C62—C63—C64119.9 (2)
O12—C12—N11122.63 (17)C62—C63—H63120.1
N13—C12—N11114.26 (17)C64—C63—H63120.1
C12—N13—C14127.76 (16)C65—C64—C63121.5 (3)
C12—N13—H13115 (2)C65—C64—H64119.3
C14—N13—H13117 (2)C63—C64—H64119.3
O14—C14—N13120.81 (18)C64—C65—C66118.0 (2)
O14—C14—C15124.47 (19)C64—C65—C68121.2 (3)
N13—C14—C15114.72 (16)C66—C65—C68120.8 (2)
C16—C15—C14118.21 (17)C67—C66—C65121.3 (2)
C16—C15—C17123.43 (17)C67—C66—H66119.4
C14—C15—C17118.36 (16)C65—C66—H66119.4
C15—C16—N11123.12 (17)C66—C67—C62120.2 (3)
C15—C16—H16118.4C66—C67—H67119.9
N11—C16—H16118.4C62—C67—H67119.9
C15—C17—H17A109.5C65—C68—H68A109.5
C15—C17—H17B109.5C65—C68—H68B109.5
H17A—C17—H17B109.5H68A—C68—H68B109.5
C15—C17—H17C109.5C65—C68—H68C109.5
H17A—C17—H17C109.5H68A—C68—H68C109.5
H17B—C17—H17C109.5H68B—C68—H68C109.5
C41—O41—C4113.26 (14)
C5—O1—C2—N11144.99 (17)C5—C4—O41—C4179.2 (2)
C5—O1—C2—C322.2 (2)C4—O41—C41—O423.7 (3)
O1—C2—C3—C432.4 (2)C4—O41—C41—C42175.27 (17)
N11—C2—C3—C4151.12 (17)O42—C41—C42—C47173.9 (2)
C2—C3—C4—O4186.80 (19)O41—C41—C42—C477.2 (3)
C2—C3—C4—C530.0 (2)O42—C41—C42—C437.1 (3)
C2—O1—C5—C6127.14 (19)O41—C41—C42—C43171.9 (2)
C2—O1—C5—C42.8 (2)C47—C42—C43—C440.6 (3)
O41—C4—C5—O198.18 (17)C41—C42—C43—C44178.4 (2)
C3—C4—C5—O117.7 (2)C42—C43—C44—C450.2 (3)
O41—C4—C5—C6140.64 (16)C43—C44—C45—C461.2 (3)
C3—C4—C5—C6103.48 (19)C43—C44—C45—C48178.7 (2)
O1—C5—C6—O6165.3 (2)C44—C45—C46—C471.6 (3)
C4—C5—C6—O6153.8 (2)C48—C45—C46—C47178.4 (2)
O1—C2—N11—C1645.8 (3)C43—C42—C47—C460.3 (3)
C3—C2—N11—C1671.6 (3)C41—C42—C47—C46178.7 (2)
O1—C2—N11—C12135.19 (19)C45—C46—C47—C420.8 (3)
C3—C2—N11—C12107.4 (2)C5—C6—O61—C61160.22 (18)
C16—N11—C12—O12175.2 (2)C6—O61—C61—O623.7 (3)
C2—N11—C12—O123.8 (3)C6—O61—C61—C62172.59 (18)
C16—N11—C12—N135.2 (3)O62—C61—C62—C63165.0 (2)
C2—N11—C12—N13175.77 (19)O61—C61—C62—C6318.8 (3)
O12—C12—N13—C14177.9 (2)O62—C61—C62—C6717.3 (4)
N11—C12—N13—C142.6 (3)O61—C61—C62—C67158.9 (2)
C12—N13—C14—O14179.0 (2)C67—C62—C63—C641.3 (3)
C12—N13—C14—C151.3 (3)C61—C62—C63—C64176.4 (2)
O14—C14—C15—C16177.7 (2)C62—C63—C64—C650.7 (4)
N13—C14—C15—C162.6 (3)C63—C64—C65—C661.4 (4)
O14—C14—C15—C172.3 (3)C63—C64—C65—C68177.0 (2)
N13—C14—C15—C17177.4 (2)C64—C65—C66—C670.2 (4)
C14—C15—C16—N110.1 (3)C68—C65—C66—C67178.3 (2)
C17—C15—C16—N11179.9 (2)C65—C66—C67—C621.7 (4)
C12—N11—C16—C154.1 (3)C63—C62—C67—C662.5 (3)
C2—N11—C16—C15176.8 (2)C61—C62—C67—C66175.3 (2)
C3—C4—O41—C41167.62 (18)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N13—H13···O42i0.88 (3)1.96 (3)2.842 (2)175 (3)
C2—H2···O121.002.342.751 (2)104
C6—H6A···O14ii0.992.413.353 (2)159
C16—H16···O610.952.593.473 (2)156
C43—H43···O12ii0.952.443.373 (2)168
C68—H68B···O62iii0.982.553.453 (4)153
Symmetry codes: (i) x, y+1, z; (ii) x, y1, z; (iii) x+1, y+1/2, z+1/2.
 

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