The crystal structure of the title compound, C8H8O3, was determined in the course of our studies of the synthesis of cyclopenta[1,2-b]furan-4-one derivatives. The title compound has two chiral C atoms and was obtained as a racemic mixture. It was found to possess a vinylogous acid group with an E configuration at the double bond. The compound exists in the hydroxymethylene and not in the tautomeric carbaldehyde form. The asymmetric unit consists of two molecules.
Supporting information
CCDC reference: 642893
Key indicators
- Single-crystal X-ray study
- T = 295 K
- Mean (C-C) = 0.004 Å
- R factor = 0.056
- wR factor = 0.175
- Data-to-parameter ratio = 12.9
checkCIF/PLATON results
No syntax errors found
Alert level B
ABSTM02_ALERT_3_B The ratio of Tmax/Tmin expected RT(exp) is > 1.20
Absorption corrections should be applied.
Tmin and Tmax expected: 0.698 0.844
RT(exp) = 1.208
PLAT057_ALERT_3_B Correction for Absorption Required RT(exp) ... 1.21
Alert level C
PLAT031_ALERT_4_C Refined Extinction Parameter within Range ...... 3.25 Sigma
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2
C8 H8 O3
0 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
2 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPPIII (Johnson, 1976) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97.
Crystal data top
C8H8O3 | F(000) = 640 |
Mr = 152.15 | Dx = 1.381 Mg m−3 |
Monoclinic, P21/c | Melting point: 119.3 K |
Hall symbol: -P 2ybc | Cu Kα radiation, λ = 1.54178 Å |
a = 11.9618 (2) Å | Cell parameters from 25 reflections |
b = 8.5709 (8) Å | θ = 61–69° |
c = 16.127 (3) Å | µ = 0.90 mm−1 |
β = 117.741 (7)° | T = 295 K |
V = 1463.3 (3) Å3 | Block, colourless |
Z = 8 | 0.51 × 0.38 × 0.19 mm |
Data collection top
Enraf–Nonius CAD-4 diffractometer | Rint = 0.014 |
Radiation source: rotating anode | θmax = 70.0°, θmin = 4.2° |
Graphite monochromator | h = 0→14 |
ω/2θ scans | k = −10→0 |
2909 measured reflections | l = −19→17 |
2770 independent reflections | 3 standard reflections every 60 min |
2009 reflections with I > 2σ(I) | intensity decay: 5% |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H-atom parameters constrained |
wR(F2) = 0.175 | w = 1/[σ2(Fo2) + (0.1021P)2 + 0.2685P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
2770 reflections | Δρmax = 0.23 e Å−3 |
214 parameters | Δρmin = −0.31 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0013 (4) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.07464 (14) | 0.7396 (2) | 0.34283 (12) | 0.0598 (5) | |
C2 | −0.0624 (2) | 0.5923 (3) | 0.30149 (18) | 0.0588 (6) | |
H2A | −0.1142 | 0.5926 | 0.2332 | 0.065 (7)* | |
C3 | −0.0968 (3) | 0.4567 (3) | 0.3457 (2) | 0.0702 (8) | |
H3A | −0.1371 | 0.4934 | 0.3822 | 0.092 (7)* | |
H3B | −0.1531 | 0.3847 | 0.2983 | 0.092 (7)* | |
C4 | 0.0270 (3) | 0.3809 (3) | 0.4073 (2) | 0.0770 (8) | |
H4 | 0.0365 | 0.2981 | 0.4474 | 0.111 (12)* | |
C5 | 0.1213 (3) | 0.4448 (3) | 0.3982 (2) | 0.0734 (8) | |
H5 | 0.2047 | 0.4114 | 0.4309 | 0.102 (11)* | |
C6 | 0.0794 (2) | 0.5765 (3) | 0.32960 (18) | 0.0578 (6) | |
H6A | 0.0927 | 0.5531 | 0.2754 | 0.069 (8)* | |
C7 | 0.13048 (19) | 0.7335 (3) | 0.36986 (15) | 0.0463 (5) | |
C8 | 0.03336 (19) | 0.8215 (3) | 0.37795 (15) | 0.0462 (5) | |
C9 | 0.24574 (19) | 0.7904 (3) | 0.39531 (15) | 0.0464 (5) | |
H9A | 0.2710 | 0.8953 | 0.4306 | 0.066 (7)* | |
O10 | 0.33174 (15) | 0.70527 (19) | 0.38572 (13) | 0.0596 (5) | |
H10 | 0.4045 | 0.7663 | 0.4095 | 0.095 (10)* | |
O11 | 0.03732 (14) | 0.9515 (2) | 0.41061 (12) | 0.0591 (5) | |
O21 | 0.42176 (14) | 1.0385 (2) | 0.34635 (13) | 0.0609 (5) | |
C22 | 0.4225 (2) | 1.1807 (3) | 0.29666 (17) | 0.0562 (6) | |
H22A | 0.3626 | 1.1732 | 0.2298 | 0.069 (8)* | |
C23 | 0.3941 (2) | 1.3221 (3) | 0.3410 (2) | 0.0669 (7) | |
H23A | 0.3279 | 1.3856 | 0.2939 | 0.085 (7)* | |
H23B | 0.3685 | 1.2904 | 0.3874 | 0.085 (7)* | |
C24 | 0.5159 (3) | 1.4082 (3) | 0.3853 (2) | 0.0664 (7) | |
H24 | 0.5284 | 1.4988 | 0.4203 | 0.094 (11)* | |
C25 | 0.6038 (2) | 1.3438 (3) | 0.37019 (19) | 0.0619 (7) | |
H25 | 0.6851 | 1.3837 | 0.3931 | 0.099 (11)* | |
C26 | 0.55963 (19) | 1.1990 (3) | 0.31217 (16) | 0.0500 (6) | |
H26A | 0.5631 | 1.2090 | 0.2529 | 0.069 (8)* | |
C27 | 0.62224 (19) | 1.0524 (3) | 0.36345 (15) | 0.0453 (5) | |
C28 | 0.53447 (19) | 0.9661 (3) | 0.38379 (16) | 0.0492 (5) | |
C29 | 0.73959 (19) | 1.0034 (3) | 0.38919 (15) | 0.0464 (5) | |
H29A | 0.7750 | 0.9049 | 0.4311 | 0.055 (7)* | |
O30 | 0.81739 (14) | 1.0853 (2) | 0.36833 (12) | 0.0580 (5) | |
H30 | 0.8988 | 1.0420 | 0.4013 | 0.120 (13)* | |
O31 | 0.54867 (16) | 0.8444 (2) | 0.42694 (13) | 0.0629 (5) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0387 (8) | 0.0625 (10) | 0.0813 (11) | −0.0055 (7) | 0.0307 (8) | −0.0087 (9) |
C2 | 0.0500 (13) | 0.0655 (15) | 0.0642 (15) | −0.0143 (11) | 0.0293 (12) | −0.0134 (12) |
C3 | 0.0625 (15) | 0.0702 (17) | 0.0875 (19) | −0.0240 (13) | 0.0429 (15) | −0.0149 (15) |
C4 | 0.0798 (19) | 0.0533 (15) | 0.106 (2) | −0.0143 (14) | 0.0497 (18) | −0.0005 (16) |
C5 | 0.0634 (16) | 0.0487 (14) | 0.114 (2) | −0.0009 (12) | 0.0465 (16) | −0.0050 (15) |
C6 | 0.0551 (13) | 0.0607 (15) | 0.0741 (15) | −0.0130 (11) | 0.0439 (12) | −0.0160 (12) |
C7 | 0.0431 (11) | 0.0472 (12) | 0.0567 (12) | −0.0026 (9) | 0.0302 (10) | −0.0020 (10) |
C8 | 0.0381 (10) | 0.0500 (12) | 0.0538 (12) | 0.0000 (9) | 0.0241 (9) | 0.0019 (9) |
C9 | 0.0414 (11) | 0.0475 (12) | 0.0591 (12) | 0.0018 (9) | 0.0309 (10) | 0.0031 (10) |
O10 | 0.0494 (9) | 0.0531 (10) | 0.0932 (12) | −0.0008 (7) | 0.0474 (9) | −0.0020 (8) |
O11 | 0.0446 (8) | 0.0537 (10) | 0.0823 (11) | 0.0040 (7) | 0.0324 (8) | −0.0051 (8) |
O21 | 0.0386 (8) | 0.0629 (10) | 0.0879 (12) | 0.0003 (7) | 0.0349 (8) | 0.0077 (9) |
C22 | 0.0388 (11) | 0.0672 (16) | 0.0630 (14) | 0.0051 (11) | 0.0240 (11) | 0.0074 (12) |
C23 | 0.0555 (14) | 0.0736 (18) | 0.0831 (17) | 0.0250 (13) | 0.0419 (14) | 0.0173 (14) |
C24 | 0.0676 (16) | 0.0517 (14) | 0.0799 (18) | 0.0138 (12) | 0.0343 (14) | 0.0036 (13) |
C25 | 0.0513 (13) | 0.0476 (13) | 0.0890 (18) | 0.0036 (11) | 0.0346 (13) | 0.0066 (12) |
C26 | 0.0421 (11) | 0.0557 (13) | 0.0598 (13) | 0.0073 (10) | 0.0301 (10) | 0.0085 (10) |
C27 | 0.0393 (11) | 0.0461 (12) | 0.0561 (12) | 0.0001 (9) | 0.0268 (9) | −0.0014 (9) |
C28 | 0.0398 (11) | 0.0500 (12) | 0.0616 (13) | −0.0028 (9) | 0.0267 (10) | −0.0031 (11) |
C29 | 0.0405 (10) | 0.0429 (11) | 0.0602 (13) | −0.0020 (9) | 0.0270 (10) | −0.0023 (9) |
O30 | 0.0407 (8) | 0.0563 (10) | 0.0864 (12) | 0.0040 (7) | 0.0374 (8) | 0.0085 (8) |
O31 | 0.0517 (9) | 0.0550 (10) | 0.0883 (12) | −0.0037 (8) | 0.0379 (9) | 0.0093 (9) |
Geometric parameters (Å, º) top
O1—C8 | 1.342 (3) | O21—C28 | 1.345 (3) |
O1—C2 | 1.467 (3) | O21—C22 | 1.461 (3) |
C2—C3 | 1.517 (4) | C22—C23 | 1.523 (4) |
C2—C6 | 1.545 (3) | C22—C26 | 1.548 (3) |
C2—H2A | 0.9800 | C22—H22A | 0.9800 |
C3—C4 | 1.494 (4) | C23—C24 | 1.486 (4) |
C3—H3A | 0.9700 | C23—H23A | 0.9700 |
C3—H3B | 0.9700 | C23—H23B | 0.9700 |
C4—C5 | 1.323 (4) | C24—C25 | 1.307 (4) |
C4—H4 | 0.9300 | C24—H24 | 0.9300 |
C5—C6 | 1.494 (4) | C25—C26 | 1.495 (3) |
C5—H5 | 0.9300 | C25—H25 | 0.9300 |
C6—C7 | 1.496 (3) | C26—C27 | 1.499 (3) |
C6—H6A | 0.9800 | C26—H26A | 0.9800 |
C7—C9 | 1.334 (3) | C27—C29 | 1.333 (3) |
C7—C8 | 1.441 (3) | C27—C28 | 1.442 (3) |
C8—O11 | 1.224 (3) | C28—O31 | 1.221 (3) |
C9—O10 | 1.328 (2) | C29—O30 | 1.328 (2) |
C9—H9A | 1.0312 | C29—H29A | 1.0400 |
O10—H10 | 0.9318 | O30—H30 | 0.9419 |
| | | |
C8—O1—C2 | 111.22 (17) | C28—O21—C22 | 111.75 (16) |
O1—C2—C3 | 109.82 (19) | O21—C22—C23 | 110.32 (19) |
O1—C2—C6 | 105.67 (18) | O21—C22—C26 | 105.79 (17) |
C3—C2—C6 | 107.2 (2) | C23—C22—C26 | 107.1 (2) |
O1—C2—H2A | 111.3 | O21—C22—H22A | 111.1 |
C3—C2—H2A | 111.3 | C23—C22—H22A | 111.1 |
C6—C2—H2A | 111.3 | C26—C22—H22A | 111.1 |
C4—C3—C2 | 104.2 (2) | C24—C23—C22 | 103.79 (19) |
C4—C3—H3A | 110.9 | C24—C23—H23A | 111.0 |
C2—C3—H3A | 110.9 | C22—C23—H23A | 111.0 |
C4—C3—H3B | 110.9 | C24—C23—H23B | 111.0 |
C2—C3—H3B | 110.9 | C22—C23—H23B | 111.0 |
H3A—C3—H3B | 108.9 | H23A—C23—H23B | 109.0 |
C5—C4—C3 | 112.3 (3) | C25—C24—C23 | 113.2 (3) |
C5—C4—H4 | 123.9 | C25—C24—H24 | 123.4 |
C3—C4—H4 | 123.9 | C23—C24—H24 | 123.4 |
C4—C5—C6 | 112.7 (3) | C24—C25—C26 | 112.8 (2) |
C4—C5—H5 | 123.7 | C24—C25—H25 | 123.6 |
C6—C5—H5 | 123.7 | C26—C25—H25 | 123.6 |
C5—C6—C7 | 115.5 (2) | C25—C26—C27 | 114.22 (19) |
C5—C6—C2 | 103.2 (2) | C25—C26—C22 | 102.95 (19) |
C7—C6—C2 | 102.69 (19) | C27—C26—C22 | 102.96 (18) |
C5—C6—H6A | 111.6 | C25—C26—H26A | 112.0 |
C7—C6—H6A | 111.6 | C27—C26—H26A | 112.0 |
C2—C6—H6A | 111.6 | C22—C26—H26A | 112.0 |
C9—C7—C8 | 122.8 (2) | C29—C27—C28 | 122.7 (2) |
C9—C7—C6 | 128.1 (2) | C29—C27—C26 | 128.3 (2) |
C8—C7—C6 | 109.05 (18) | C28—C27—C26 | 109.02 (18) |
O11—C8—O1 | 119.6 (2) | O31—C28—O21 | 119.6 (2) |
O11—C8—C7 | 130.1 (2) | O31—C28—C27 | 130.2 (2) |
O1—C8—C7 | 110.28 (19) | O21—C28—C27 | 110.2 (2) |
O10—C9—C7 | 120.6 (2) | O30—C29—C27 | 121.0 (2) |
O10—C9—H9A | 119.9 | O30—C29—H29A | 118.2 |
C7—C9—H9A | 119.0 | C27—C29—H29A | 120.6 |
C9—O10—H10 | 105.7 | C29—O30—H30 | 108.2 |
| | | |
C8—O1—C2—C3 | 124.6 (2) | C28—O21—C22—C23 | −119.1 (2) |
C8—O1—C2—C6 | 9.2 (3) | C28—O21—C22—C26 | −3.5 (3) |
O1—C2—C3—C4 | −107.1 (2) | O21—C22—C23—C24 | 110.7 (2) |
C6—C2—C3—C4 | 7.3 (3) | C26—C22—C23—C24 | −4.0 (3) |
C2—C3—C4—C5 | −5.0 (3) | C22—C23—C24—C25 | 2.7 (3) |
C3—C4—C5—C6 | 0.5 (4) | C23—C24—C25—C26 | −0.2 (3) |
C4—C5—C6—C7 | 115.3 (3) | C24—C25—C26—C27 | −113.2 (2) |
C4—C5—C6—C2 | 4.1 (3) | C24—C25—C26—C22 | −2.3 (3) |
O1—C2—C6—C5 | 110.1 (2) | O21—C22—C26—C25 | −113.8 (2) |
C3—C2—C6—C5 | −7.0 (3) | C23—C22—C26—C25 | 3.9 (2) |
O1—C2—C6—C7 | −10.2 (2) | O21—C22—C26—C27 | 5.2 (2) |
C3—C2—C6—C7 | −127.3 (2) | C23—C22—C26—C27 | 122.9 (2) |
C5—C6—C7—C9 | 77.0 (3) | C25—C26—C27—C29 | −73.7 (3) |
C2—C6—C7—C9 | −171.5 (2) | C22—C26—C27—C29 | 175.5 (2) |
C5—C6—C7—C8 | −103.2 (2) | C25—C26—C27—C28 | 105.6 (2) |
C2—C6—C7—C8 | 8.3 (2) | C22—C26—C27—C28 | −5.2 (2) |
C2—O1—C8—O11 | 176.1 (2) | C22—O21—C28—O31 | −179.3 (2) |
C2—O1—C8—C7 | −4.1 (3) | C22—O21—C28—C27 | 0.2 (3) |
C9—C7—C8—O11 | −3.4 (4) | C29—C27—C28—O31 | 2.2 (4) |
C6—C7—C8—O11 | 176.8 (2) | C26—C27—C28—O31 | −177.1 (2) |
C9—C7—C8—O1 | 176.7 (2) | C29—C27—C28—O21 | −177.3 (2) |
C6—C7—C8—O1 | −3.1 (3) | C26—C27—C28—O21 | 3.4 (3) |
C8—C7—C9—O10 | −179.40 (19) | C28—C27—C29—O30 | 179.3 (2) |
C6—C7—C9—O10 | 0.4 (4) | C26—C27—C29—O30 | −1.5 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O10—H10···O31 | 0.93 | 1.75 | 2.644 (2) | 161 |
O10—H10···O21 | 0.93 | 2.59 | 3.218 (2) | 125 |
O30—H30···O11i | 0.94 | 1.77 | 2.651 (2) | 154 |
Symmetry code: (i) x+1, y, z. |