Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807016467/hb2361sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807016467/hb2361Isup2.hkl |
CCDC reference: 647575
Key indicators
- Single-crystal X-ray study
- T = 120 K
- Mean (C-C)= 0.002 Å
- R factor = 0.040
- wR factor = 0.108
- Data-to-parameter ratio = 16.4
checkCIF/PLATON results
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Alert level A PUBL024_ALERT_1_A The number of authors is greater than 5. Please specify the role of each of the co-authors for your paper.
Author Response: Authors Garden, Corr\^ea & Pinto prepared, purified and characterised the compound; author Wardell prepared the crystals; author Low solved & refined the structure; authors Glidewell & Wardell analysed the structure and wrote the paper. |
1 ALERT level A = Data missing that is essential or data in wrong format 0 ALERT level G = General alerts. Data that may be required is missing
Compound (I) was prepared as previously reported (Garden et al., 2003). Crystals suitable for single-crystal X-ray diffraction were grown by slow evaporation of a solution in hexane-dichloromethane (1:1, v/v).
All the H atoms were located in difference maps, relocated in idealized positions, and treated as riding atoms with distances C—H 0.95 Å (aromatic), 0.98 Å (CH3) or 0.99 Å (CH2), N—H 0.91 Å and O—H 0.84 Å, and with Uiso(H) = kUeq(carrier), where k = 1.5 fo the hydroxyl and methyl H atoms and 1.2 for all other H atoms.
We report here the structure of the title compound (I) (Fig. 2), which is a precursor (Garden et al., 2003) of ethyl N-[2-(hydroxyacetyl)phenyl]carbamate (II), whose structure we reported recently (Garden et al., 2007).
The 1,3-dioxolane ring in (I) adopts a twisted conformation with ring-puckering parameters (Cremer & Pople, 1975) for the atom sequence (O21, C21, O23, C24, C23) of Q2 0.360 (2) Å and φ2 347.3 (2)°, with atom displacements from the mean plane indicative of a conformation twisted about the line joining atom O23 to the mid-point of the O21—C23 bond. The carbamate ester side chain adopts an almost planar, all-trans conformation, as indicated by the relevant torsional angles (Table 1). The conformation about the C2—C21 bond is such that atom O21 is close to the plane of the aryl ring: hence it seems unlikely that this conformation is materially influenced by the intramolecular N—H···O hydrogen bond (Table 2).
A single O—H···O hydrogen bond (Table 2) links pairs of molecules into cyclic dimers: the hydroxyl atom O22 at (x, y, z) acts as hydrogen-bond donor to the carbonyl atom O11 in the molecule at (1 - x, 1 - y, 1 - z), so generating by inversion an R22(18) ring (Bernstein et al., 1995) centred at (1/2, 1/2, 1/2) to which are fused two S(6) rings generated by the intramolecular N—H···O hydrogen bond (Fig. 3). Two dimers of this type lie in each unit cell, but there are no direction-specific interactions between the dimer units.
In the precursor compound (II) (Garden et al., 2007) all of the non-H atoms lie on a mirror plane in space group Pnma and the molecules are linked by a single C—H···O hydrogen bond into a simple C(6) chain.
For related literature, see: Bernstein et al. (1995); Cremer & Pople (1975); Garden et al. (2003).
Data collection: COLLECT (Hooft, 1999); cell refinement: DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: OSCAIL and SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PRPKAPPA (Ferguson, 1999).
C13H17NO5 | F(000) = 568 |
Mr = 267.28 | Dx = 1.412 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7223 reflections |
a = 7.4469 (2) Å | θ = 2.9–27.5° |
b = 20.2814 (6) Å | µ = 0.11 mm−1 |
c = 8.3443 (3) Å | T = 120 K |
β = 94.1400 (17)° | Plate, colourless |
V = 1256.98 (7) Å3 | 0.40 × 0.35 × 0.08 mm |
Z = 4 |
Bruker–Nonius KappaCCD diffractometer | 2859 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 2351 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
φ and ω scans | h = −9→9 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | k = −26→25 |
Tmin = 0.966, Tmax = 0.991 | l = −10→10 |
15419 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0548P)2 + 0.3663P] where P = (Fo2 + 2Fc2)/3 |
2859 reflections | (Δ/σ)max = 0.001 |
174 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C13H17NO5 | V = 1256.98 (7) Å3 |
Mr = 267.28 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.4469 (2) Å | µ = 0.11 mm−1 |
b = 20.2814 (6) Å | T = 120 K |
c = 8.3443 (3) Å | 0.40 × 0.35 × 0.08 mm |
β = 94.1400 (17)° |
Bruker–Nonius KappaCCD diffractometer | 2859 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2351 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.991 | Rint = 0.043 |
15419 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.25 e Å−3 |
2859 reflections | Δρmin = −0.30 e Å−3 |
174 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.80896 (17) | 0.55854 (6) | 0.58422 (16) | 0.0149 (3) | |
N1 | 0.78526 (15) | 0.52817 (5) | 0.43164 (13) | 0.0162 (3) | |
C11 | 0.70954 (17) | 0.46878 (6) | 0.39499 (16) | 0.0150 (3) | |
O11 | 0.65376 (13) | 0.42894 (5) | 0.48877 (12) | 0.0216 (2) | |
O12 | 0.70481 (13) | 0.45971 (5) | 0.23489 (11) | 0.0185 (2) | |
C12 | 0.63510 (19) | 0.39661 (6) | 0.17684 (16) | 0.0181 (3) | |
C13 | 0.6294 (2) | 0.39934 (7) | −0.00381 (17) | 0.0236 (3) | |
C2 | 0.83290 (16) | 0.62743 (6) | 0.59031 (16) | 0.0142 (3) | |
C21 | 0.81496 (17) | 0.67041 (6) | 0.43921 (16) | 0.0150 (3) | |
O21 | 0.88614 (12) | 0.73417 (4) | 0.46946 (12) | 0.0179 (2) | |
C23 | 1.07494 (19) | 0.72825 (7) | 0.44691 (18) | 0.0204 (3) | |
C24 | 1.07660 (18) | 0.68280 (7) | 0.30267 (17) | 0.0195 (3) | |
O23 | 0.91580 (13) | 0.64355 (4) | 0.31326 (11) | 0.0189 (2) | |
C22 | 0.62001 (18) | 0.67700 (7) | 0.36960 (17) | 0.0191 (3) | |
O22 | 0.50165 (13) | 0.69769 (5) | 0.48450 (12) | 0.0220 (2) | |
C3 | 0.86213 (17) | 0.65753 (7) | 0.74049 (16) | 0.0168 (3) | |
C4 | 0.86634 (18) | 0.62115 (7) | 0.88192 (16) | 0.0187 (3) | |
C5 | 0.84013 (18) | 0.55357 (7) | 0.87435 (16) | 0.0197 (3) | |
C6 | 0.81261 (19) | 0.52213 (7) | 0.72655 (17) | 0.0185 (3) | |
H1 | 0.8325 | 0.5492 | 0.3486 | 0.019* | |
H12A | 0.5129 | 0.3891 | 0.2128 | 0.022* | |
H12B | 0.7145 | 0.3603 | 0.2181 | 0.022* | |
H13A | 0.5472 | 0.4345 | −0.0431 | 0.035* | |
H13C | 0.5869 | 0.3570 | −0.0485 | 0.035* | |
H13B | 0.7504 | 0.4084 | −0.0374 | 0.035* | |
H23A | 1.1410 | 0.7086 | 0.5425 | 0.024* | |
H23B | 1.1285 | 0.7716 | 0.4242 | 0.024* | |
H24A | 1.0717 | 0.7082 | 0.2012 | 0.023* | |
H24B | 1.1856 | 0.6547 | 0.3092 | 0.023* | |
H22A | 0.6152 | 0.7092 | 0.2802 | 0.023* | |
H22B | 0.5788 | 0.6339 | 0.3250 | 0.023* | |
H22 | 0.4503 | 0.6647 | 0.5212 | 0.033* | |
H3 | 0.8795 | 0.7039 | 0.7461 | 0.020* | |
H4 | 0.8870 | 0.6425 | 0.9829 | 0.022* | |
H5 | 0.8410 | 0.5286 | 0.9707 | 0.024* | |
H6 | 0.7962 | 0.4757 | 0.7223 | 0.022* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0136 (6) | 0.0167 (6) | 0.0143 (6) | 0.0003 (5) | 0.0012 (5) | −0.0023 (5) |
N1 | 0.0210 (6) | 0.0147 (5) | 0.0132 (5) | −0.0031 (4) | 0.0033 (4) | −0.0009 (4) |
C11 | 0.0135 (6) | 0.0155 (6) | 0.0159 (7) | 0.0004 (5) | 0.0007 (5) | −0.0013 (5) |
O11 | 0.0279 (5) | 0.0186 (5) | 0.0185 (5) | −0.0070 (4) | 0.0027 (4) | 0.0014 (4) |
O12 | 0.0260 (5) | 0.0147 (5) | 0.0148 (5) | −0.0055 (4) | 0.0018 (4) | −0.0027 (4) |
C12 | 0.0215 (7) | 0.0138 (6) | 0.0188 (7) | −0.0044 (5) | −0.0002 (5) | −0.0023 (5) |
C13 | 0.0338 (8) | 0.0185 (7) | 0.0181 (7) | −0.0046 (6) | −0.0007 (6) | −0.0020 (5) |
C2 | 0.0100 (6) | 0.0164 (6) | 0.0164 (7) | 0.0004 (5) | 0.0023 (5) | −0.0009 (5) |
C21 | 0.0164 (6) | 0.0123 (6) | 0.0168 (6) | −0.0015 (5) | 0.0038 (5) | −0.0023 (5) |
O21 | 0.0173 (5) | 0.0125 (5) | 0.0246 (5) | −0.0029 (4) | 0.0055 (4) | −0.0031 (4) |
C23 | 0.0173 (7) | 0.0192 (7) | 0.0255 (8) | −0.0047 (5) | 0.0072 (6) | −0.0022 (6) |
C24 | 0.0180 (7) | 0.0215 (7) | 0.0195 (7) | −0.0038 (5) | 0.0053 (5) | −0.0009 (5) |
O23 | 0.0229 (5) | 0.0168 (5) | 0.0178 (5) | −0.0056 (4) | 0.0080 (4) | −0.0036 (4) |
C22 | 0.0188 (7) | 0.0193 (7) | 0.0188 (7) | −0.0017 (5) | −0.0008 (5) | 0.0028 (5) |
O22 | 0.0168 (5) | 0.0209 (5) | 0.0289 (6) | 0.0002 (4) | 0.0041 (4) | 0.0017 (4) |
C3 | 0.0129 (6) | 0.0180 (6) | 0.0196 (7) | 0.0001 (5) | 0.0020 (5) | −0.0042 (5) |
C4 | 0.0164 (6) | 0.0247 (7) | 0.0146 (7) | 0.0008 (5) | −0.0019 (5) | −0.0043 (5) |
C5 | 0.0198 (7) | 0.0240 (7) | 0.0149 (7) | 0.0035 (5) | −0.0012 (5) | 0.0018 (5) |
C6 | 0.0203 (7) | 0.0163 (6) | 0.0190 (7) | 0.0016 (5) | 0.0017 (5) | 0.0009 (5) |
C1—C6 | 1.3971 (19) | O21—C23 | 1.4369 (17) |
C1—C2 | 1.4090 (18) | C23—C24 | 1.5169 (19) |
C1—N1 | 1.4139 (17) | C23—H23A | 0.99 |
N1—C11 | 1.3555 (17) | C23—H23B | 0.99 |
N1—H1 | 0.9060 | C24—O23 | 1.4459 (16) |
C11—O11 | 1.2185 (16) | C24—H24A | 0.99 |
C11—O12 | 1.3464 (16) | C24—H24B | 0.99 |
O12—C12 | 1.4512 (15) | C22—O22 | 1.4122 (17) |
C12—C13 | 1.5059 (19) | C22—H22A | 0.99 |
C12—H12A | 0.99 | C22—H22B | 0.99 |
C12—H12B | 0.99 | O22—H22 | 0.84 |
C13—H13A | 0.98 | C3—C4 | 1.390 (2) |
C13—H13C | 0.98 | C3—H3 | 0.95 |
C13—H13B | 0.98 | C4—C5 | 1.385 (2) |
C2—C3 | 1.3968 (18) | C4—H4 | 0.95 |
C2—C21 | 1.5306 (18) | C5—C6 | 1.390 (2) |
C21—O21 | 1.4133 (15) | C5—H5 | 0.95 |
C21—O23 | 1.4420 (15) | C6—H6 | 0.95 |
C21—C22 | 1.5300 (19) | ||
C6—C1—C2 | 119.93 (12) | O21—C23—C24 | 102.64 (11) |
C6—C1—N1 | 121.91 (12) | O21—C23—H23A | 111.2 |
C2—C1—N1 | 118.15 (11) | C24—C23—H23A | 111.2 |
C11—N1—C1 | 127.82 (11) | O21—C23—H23B | 111.2 |
C11—N1—H1 | 115.1 | C24—C23—H23B | 111.2 |
C1—N1—H1 | 117.0 | H23A—C23—H23B | 109.2 |
O11—C11—O12 | 124.12 (12) | O23—C24—C23 | 103.41 (10) |
O11—C11—N1 | 126.86 (12) | O23—C24—H24A | 111.1 |
O12—C11—N1 | 109.02 (11) | C23—C24—H24A | 111.1 |
C11—O12—C12 | 115.77 (10) | O23—C24—H24B | 111.1 |
O12—C12—C13 | 106.57 (11) | C23—C24—H24B | 111.1 |
O12—C12—H12A | 110.4 | H24A—C24—H24B | 109.0 |
C13—C12—H12A | 110.4 | C21—O23—C24 | 108.29 (10) |
O12—C12—H12B | 110.4 | O22—C22—C21 | 112.95 (11) |
C13—C12—H12B | 110.4 | O22—C22—H22A | 109.0 |
H12A—C12—H12B | 108.6 | C21—C22—H22A | 109.0 |
C12—C13—H13A | 109.5 | O22—C22—H22B | 109.0 |
C12—C13—H13C | 109.5 | C21—C22—H22B | 109.0 |
H13A—C13—H13C | 109.5 | H22A—C22—H22B | 107.8 |
C12—C13—H13B | 109.5 | C22—O22—H22 | 109.5 |
H13A—C13—H13B | 109.5 | C4—C3—C2 | 121.47 (13) |
H13C—C13—H13B | 109.5 | C4—C3—H3 | 119.3 |
C3—C2—C1 | 118.48 (12) | C2—C3—H3 | 119.3 |
C3—C2—C21 | 119.26 (12) | C5—C4—C3 | 119.47 (13) |
C1—C2—C21 | 122.12 (11) | C5—C4—H4 | 120.3 |
O21—C21—O23 | 105.51 (9) | C3—C4—H4 | 120.3 |
O21—C21—C22 | 108.74 (10) | C4—C5—C6 | 120.37 (13) |
O23—C21—C22 | 106.62 (11) | C4—C5—H5 | 119.8 |
O21—C21—C2 | 111.38 (11) | C6—C5—H5 | 119.8 |
O23—C21—C2 | 111.48 (10) | C5—C6—C1 | 120.27 (13) |
C22—C21—C2 | 112.74 (10) | C5—C6—H6 | 119.9 |
C21—O21—C23 | 104.96 (9) | C1—C6—H6 | 119.9 |
C6—C1—N1—C11 | 22.4 (2) | C22—C21—O21—C23 | −149.12 (11) |
C2—C1—N1—C11 | −158.84 (13) | C2—C21—O21—C23 | 86.06 (12) |
C1—N1—C11—O11 | −3.2 (2) | C21—O21—C23—C24 | 39.27 (13) |
C1—N1—C11—O12 | 176.87 (12) | O21—C23—C24—O23 | −28.36 (13) |
O11—C11—O12—C12 | −2.81 (18) | O21—C21—O23—C24 | 16.27 (14) |
N1—C11—O12—C12 | 177.10 (11) | C22—C21—O23—C24 | 131.78 (11) |
C11—O12—C12—C13 | 175.90 (11) | C2—C21—O23—C24 | −104.78 (12) |
C6—C1—C2—C3 | 0.77 (18) | C23—C24—O23—C21 | 7.74 (14) |
N1—C1—C2—C3 | −177.99 (11) | O21—C21—C22—O22 | −71.69 (13) |
C6—C1—C2—C21 | −174.92 (11) | O23—C21—C22—O22 | 174.98 (10) |
N1—C1—C2—C21 | 6.32 (18) | C2—C21—C22—O22 | 52.33 (15) |
C3—C2—C21—O21 | 18.48 (16) | C1—C2—C3—C4 | −0.55 (18) |
C1—C2—C21—O21 | −165.86 (11) | C21—C2—C3—C4 | 175.27 (12) |
C3—C2—C21—O23 | 136.05 (12) | C2—C3—C4—C5 | −0.33 (19) |
C1—C2—C21—O23 | −48.29 (16) | C3—C4—C5—C6 | 1.0 (2) |
C3—C2—C21—C22 | −104.07 (13) | C4—C5—C6—C1 | −0.8 (2) |
C1—C2—C21—C22 | 71.59 (15) | C2—C1—C6—C5 | −0.12 (19) |
O23—C21—O21—C23 | −35.06 (13) | N1—C1—C6—C5 | 178.59 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O23 | 0.91 | 2.04 | 2.7451 (14) | 134 |
O22—H22···O11i | 0.84 | 2.05 | 2.8324 (14) | 155 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C13H17NO5 |
Mr | 267.28 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 120 |
a, b, c (Å) | 7.4469 (2), 20.2814 (6), 8.3443 (3) |
β (°) | 94.1400 (17) |
V (Å3) | 1256.98 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.40 × 0.35 × 0.08 |
Data collection | |
Diffractometer | Bruker–Nonius KappaCCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.966, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15419, 2859, 2351 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.108, 1.06 |
No. of reflections | 2859 |
No. of parameters | 174 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.30 |
Computer programs: COLLECT (Hooft, 1999), DENZO (Otwinowski & Minor, 1997) and COLLECT, DENZO and COLLECT, OSCAIL (McArdle, 2003) and SHELXS97 (Sheldrick, 1997), OSCAIL and SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003), SHELXL97 and PRPKAPPA (Ferguson, 1999).
C2—C1—N1—C11 | −158.84 (13) | C1—C2—C21—O21 | −165.86 (11) |
C1—N1—C11—O12 | 176.87 (12) | C1—C2—C21—O23 | −48.29 (16) |
N1—C11—O12—C12 | 177.10 (11) | C1—C2—C21—C22 | 71.59 (15) |
C11—O12—C12—C13 | 175.90 (11) | C2—C21—C22—O22 | 52.33 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O23 | 0.91 | 2.04 | 2.7451 (14) | 134 |
O22—H22···O11i | 0.84 | 2.05 | 2.8324 (14) | 155 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
We report here the structure of the title compound (I) (Fig. 2), which is a precursor (Garden et al., 2003) of ethyl N-[2-(hydroxyacetyl)phenyl]carbamate (II), whose structure we reported recently (Garden et al., 2007).
The 1,3-dioxolane ring in (I) adopts a twisted conformation with ring-puckering parameters (Cremer & Pople, 1975) for the atom sequence (O21, C21, O23, C24, C23) of Q2 0.360 (2) Å and φ2 347.3 (2)°, with atom displacements from the mean plane indicative of a conformation twisted about the line joining atom O23 to the mid-point of the O21—C23 bond. The carbamate ester side chain adopts an almost planar, all-trans conformation, as indicated by the relevant torsional angles (Table 1). The conformation about the C2—C21 bond is such that atom O21 is close to the plane of the aryl ring: hence it seems unlikely that this conformation is materially influenced by the intramolecular N—H···O hydrogen bond (Table 2).
A single O—H···O hydrogen bond (Table 2) links pairs of molecules into cyclic dimers: the hydroxyl atom O22 at (x, y, z) acts as hydrogen-bond donor to the carbonyl atom O11 in the molecule at (1 - x, 1 - y, 1 - z), so generating by inversion an R22(18) ring (Bernstein et al., 1995) centred at (1/2, 1/2, 1/2) to which are fused two S(6) rings generated by the intramolecular N—H···O hydrogen bond (Fig. 3). Two dimers of this type lie in each unit cell, but there are no direction-specific interactions between the dimer units.