Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807019435/hg2226sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807019435/hg2226Isup2.hkl |
CCDC reference: 646651
Key indicators
- Single-crystal X-ray study
- T = 291 K
- Mean (C-C) = 0.007 Å
- Disorder in solvent or counterion
- R factor = 0.061
- wR factor = 0.131
- Data-to-parameter ratio = 14.9
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 6.00 Perc. PLAT341_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 7 PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 6
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Cucurbit[6]uril was prepared by modified methods (Whang et al., 1998; Jansen et al., 2001), and the other reagents were commercially available and without further purification. The title adduct suitable for X-ray crystallographic analysis was prepared by slow evaporation of the hydrochloric acid (4M) solution of cucurbit[6]uril (50 mg, 0.05 mmol), CaCl2 (35 mg, 0.32 mmol) and ZnCl2 (40 mg, 0.29 mmol).
H atoms were positioned geometrically and refined using a riding model with C—H = 0.97–0.98 Å, O—H = 0.85–0.97 Å, and with Uiso(H) = 1.2 times Ueq(C).
The construction of inorganic-organic hybrid supramolecular compounds of cucurbit[6]uril containing large pores or channels has developed significantly in recent years (Freeman et al., 1981; Gerasko et al., 2002). This paper follows a new structural report on cucurbit[6]uril with both coordinated calcium cation and transition-metal salt anion ZnCl42- as contra-ion.
As shown in Fig.1, each cucurbit[6]uril molecule is coordinated to two calcium cations as a tetradentate ligand, which is differs from the works reported by Freeman and Samsonenko in which cucurbit[6]uril molecules serves as bidentate ligands (Freeman et al., 1981; Samsonenko et al., 2001). The inner cavity of the cucurbit[6]uril molecule is filled with a guest water molecule, O7, its occupied probability is 0.5 and disordered over two positions. Each calcium cation is coordinated by two neighboring carbonyl O atoms (O4 and O5) at a portal of the same cage. The bond lengths are 2.383 (3) and 2.479 (3) Å for Ca1—O4 and Ca1—O5, respectively. Hepta-coordination at the Calcium cation is completed with five water molecules O8, O9, O10, O11 and O12. The Ca—O bond lengths vary from 2.366 (3) to 2.389 (3) Å.
For related literature, see: Freeman et al. (1981); Gerasko et al. (2002); Jansen et al. (2001); Samsonenko et al. (2001); Whang et al. (1998); Burrow et al. (1997).
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2000); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
[Ca2(C36H36N24O12)(H2O)10][ZnCl4]2·7H2O | F(000) = 1844 |
Mr = 1797.66 | Dx = 1.689 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5973 reflections |
a = 14.428 (3) Å | θ = 2.1–26.4° |
b = 16.397 (4) Å | µ = 1.22 mm−1 |
c = 15.798 (3) Å | T = 291 K |
β = 108.987 (3)° | Block, colourless |
V = 3534.0 (13) Å3 | 0.28 × 0.24 × 0.22 mm |
Z = 2 |
Bruker SMART APEX CCD diffractometer | 6860 independent reflections |
Radiation source: sealed tube | 4939 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.051 |
φ and ω scans | θmax = 26.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −17→17 |
Tmin = 0.72, Tmax = 0.76 | k = −20→13 |
17975 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.061 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.06P)2 + 1.99P] where P = (Fo2 + 2Fc2)/3 |
6860 reflections | (Δ/σ)max < 0.001 |
460 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
[Ca2(C36H36N24O12)(H2O)10][ZnCl4]2·7H2O | V = 3534.0 (13) Å3 |
Mr = 1797.66 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 14.428 (3) Å | µ = 1.22 mm−1 |
b = 16.397 (4) Å | T = 291 K |
c = 15.798 (3) Å | 0.28 × 0.24 × 0.22 mm |
β = 108.987 (3)° |
Bruker SMART APEX CCD diffractometer | 6860 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 4939 reflections with I > 2σ(I) |
Tmin = 0.72, Tmax = 0.76 | Rint = 0.051 |
17975 measured reflections |
R[F2 > 2σ(F2)] = 0.061 | 0 restraints |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.37 e Å−3 |
6860 reflections | Δρmin = −0.48 e Å−3 |
460 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | −0.1614 (3) | 0.2144 (3) | 0.3505 (3) | 0.0308 (9) | |
C2 | −0.1394 (3) | 0.0195 (3) | 0.2032 (3) | 0.0376 (11) | |
C3 | −0.1206 (3) | −0.2000 (3) | 0.3098 (3) | 0.0308 (9) | |
C4 | 0.1202 (3) | 0.2273 (3) | 0.4369 (3) | 0.0308 (9) | |
C5 | 0.1425 (3) | 0.0420 (3) | 0.2987 (3) | 0.0323 (10) | |
C6 | 0.1614 (3) | −0.1851 (3) | 0.4007 (3) | 0.0346 (10) | |
C7 | −0.1555 (3) | 0.2874 (3) | 0.4878 (3) | 0.0340 (10) | |
H5A | −0.2255 | 0.2769 | 0.4666 | 0.041* | |
H5B | −0.1463 | 0.3454 | 0.4998 | 0.041* | |
C8 | −0.1396 (3) | 0.1682 (3) | 0.2107 (3) | 0.0390 (11) | |
H3B | −0.1302 | 0.2045 | 0.1657 | 0.047* | |
H3C | −0.2094 | 0.1584 | 0.1955 | 0.047* | |
C9 | −0.1092 (3) | −0.1247 (3) | 0.1791 (3) | 0.0435 (12) | |
H10A | −0.0902 | −0.1465 | 0.1301 | 0.052* | |
H10B | −0.1801 | −0.1269 | 0.1615 | 0.052* | |
C10 | 0.1016 (3) | 0.2972 (3) | 0.5671 (3) | 0.0355 (10) | |
H2B | 0.0863 | 0.3548 | 0.5680 | 0.043* | |
H2C | 0.1724 | 0.2920 | 0.5869 | 0.043* | |
C11 | 0.1138 (3) | 0.1896 (3) | 0.2852 (3) | 0.0390 (11) | |
H6A | 0.1847 | 0.1919 | 0.3104 | 0.047* | |
H6B | 0.0944 | 0.2230 | 0.2316 | 0.047* | |
C12 | 0.1465 (3) | −0.1053 (3) | 0.2653 (3) | 0.0359 (10) | |
H8A | 0.2161 | −0.0973 | 0.2954 | 0.043* | |
H8B | 0.1384 | −0.1283 | 0.2068 | 0.043* | |
C13 | −0.0255 (3) | 0.2994 (3) | 0.4111 (3) | 0.0325 (10) | |
H9A | −0.0263 | 0.3591 | 0.4097 | 0.039* | |
C14 | −0.0222 (3) | 0.2635 (3) | 0.3232 (3) | 0.0313 (9) | |
H14A | −0.0276 | 0.3061 | 0.2784 | 0.038* | |
C15 | −0.0014 (3) | 0.0829 (3) | 0.1866 (3) | 0.0387 (11) | |
H4A | −0.0042 | 0.1107 | 0.1309 | 0.046* | |
C16 | 0.0098 (3) | −0.0092 (3) | 0.1801 (3) | 0.0404 (11) | |
H7A | 0.0155 | −0.0252 | 0.1223 | 0.048* | |
C17 | 0.0256 (3) | −0.2159 (3) | 0.2784 (3) | 0.0351 (10) | |
H11A | 0.0315 | −0.2473 | 0.2276 | 0.042* | |
C18 | 0.0280 (3) | −0.2717 (3) | 0.3574 (3) | 0.0340 (10) | |
H17A | 0.0340 | −0.3293 | 0.3434 | 0.041* | |
Ca1 | 0.34045 (6) | 0.11550 (5) | 0.48616 (6) | 0.0311 (2) | |
Cl1 | 0.60289 (9) | 0.00034 (7) | 0.96932 (8) | 0.0412 (3) | |
Cl2 | 0.85289 (9) | 0.06280 (9) | 0.97036 (8) | 0.0503 (3) | |
Cl3 | 0.73290 (9) | −0.11430 (7) | 0.84019 (8) | 0.0426 (3) | |
Cl4 | 0.62931 (9) | 0.09276 (8) | 0.77144 (8) | 0.0430 (3) | |
N1 | −0.1162 (3) | 0.2666 (2) | 0.4182 (3) | 0.0362 (9) | |
N2 | −0.1056 (2) | 0.2085 (2) | 0.2959 (2) | 0.0339 (8) | |
N3 | −0.0919 (3) | 0.0918 (2) | 0.2066 (3) | 0.0377 (9) | |
N4 | −0.0793 (3) | −0.0415 (2) | 0.1923 (2) | 0.0349 (8) | |
N5 | −0.0687 (3) | −0.1766 (2) | 0.2567 (2) | 0.0346 (8) | |
N6 | −0.0648 (3) | −0.2551 (2) | 0.3708 (3) | 0.0336 (8) | |
N7 | 0.0629 (2) | 0.2681 (2) | 0.4773 (2) | 0.0312 (8) | |
N8 | 0.0725 (3) | 0.2238 (2) | 0.3483 (3) | 0.0350 (8) | |
N9 | 0.0849 (3) | 0.1063 (2) | 0.2604 (2) | 0.0346 (8) | |
N10 | 0.0985 (3) | −0.0272 (2) | 0.2537 (3) | 0.0371 (9) | |
N11 | 0.1100 (3) | −0.1633 (2) | 0.3164 (2) | 0.0349 (8) | |
N12 | 0.1124 (2) | −0.2437 (2) | 0.4295 (2) | 0.0310 (8) | |
O1 | −0.2394 (2) | 0.1809 (2) | 0.3391 (2) | 0.0415 (8) | |
O2 | −0.2196 (2) | 0.0094 (2) | 0.2103 (3) | 0.0495 (9) | |
O3 | −0.2035 (2) | −0.1792 (2) | 0.3023 (2) | 0.0415 (8) | |
O4 | 0.2022 (2) | 0.19935 (19) | 0.4755 (2) | 0.0365 (7) | |
O5 | 0.2185 (2) | 0.0438 (2) | 0.3605 (2) | 0.0406 (8) | |
O6 | 0.2422 (2) | −0.15661 (19) | 0.4453 (2) | 0.0378 (7) | |
O7 | 0.9032 (4) | 1.0047 (4) | 0.4553 (4) | 0.0431 (16) | 0.50 |
H7C | 0.9087 | 1.0217 | 0.4063 | 0.052* | 0.50 |
H7D | 0.8967 | 0.9534 | 0.4474 | 0.052* | 0.50 |
O8 | 0.4028 (2) | 0.2508 (2) | 0.4978 (2) | 0.0456 (8) | |
H8C | 0.4540 | 0.2197 | 0.5408 | 0.055* | |
H8D | 0.3809 | 0.3003 | 0.5191 | 0.055* | |
O9 | 0.5117 (2) | 0.0987 (2) | 0.5633 (2) | 0.0451 (8) | |
H9B | 0.5531 | 0.1230 | 0.5442 | 0.054* | |
H9C | 0.5315 | 0.0574 | 0.5968 | 0.054* | |
O10 | 0.4048 (2) | 0.1092 (2) | 0.3657 (2) | 0.0427 (8) | |
H10C | 0.4429 | 0.0694 | 0.3665 | 0.051* | |
H10D | 0.4229 | 0.1539 | 0.3487 | 0.051* | |
O11 | 0.3528 (2) | −0.02801 (19) | 0.5115 (2) | 0.0388 (7) | |
H11B | 0.3621 | −0.0794 | 0.5435 | 0.047* | |
H11C | 0.3709 | 0.0216 | 0.5464 | 0.047* | |
O12 | 0.3432 (2) | 0.1156 (2) | 0.6367 (2) | 0.0431 (8) | |
H12D | 0.3778 | 0.0726 | 0.6767 | 0.052* | |
H12C | 0.3306 | 0.1662 | 0.6628 | 0.052* | |
O1W | 0.5848 (2) | 0.1119 (2) | 0.3298 (2) | 0.0420 (8) | |
H1WA | 0.5828 | 0.0777 | 0.2888 | 0.063* | |
H1WB | 0.6083 | 0.1567 | 0.3190 | 0.063* | |
O2W | 0.5973 (2) | 0.2777 (2) | 0.5188 (2) | 0.0434 (8) | |
H2WA | 0.6352 | 0.2411 | 0.5497 | 0.065* | |
H2WC | 0.5939 | 0.3171 | 0.5527 | 0.065* | |
O3W | 0.5930 (3) | −0.0055 (2) | 0.2081 (2) | 0.0460 (8) | |
H3WA | 0.5656 | 0.0291 | 0.1571 | 0.069* | |
H3WB | 0.6620 | −0.0120 | 0.2188 | 0.069* | |
Zn1 | 0.70585 (4) | 0.01177 (3) | 0.88953 (3) | 0.03279 (15) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.022 (2) | 0.031 (2) | 0.032 (2) | 0.0042 (17) | −0.0022 (17) | 0.0092 (18) |
C2 | 0.028 (2) | 0.050 (3) | 0.028 (2) | −0.002 (2) | −0.0007 (18) | −0.001 (2) |
C3 | 0.028 (2) | 0.032 (2) | 0.028 (2) | −0.0056 (18) | 0.0042 (17) | −0.0099 (18) |
C4 | 0.029 (2) | 0.028 (2) | 0.032 (2) | −0.0014 (17) | 0.0068 (18) | 0.0094 (18) |
C5 | 0.030 (2) | 0.045 (3) | 0.022 (2) | −0.0009 (19) | 0.0083 (18) | 0.0044 (18) |
C6 | 0.023 (2) | 0.040 (3) | 0.038 (3) | 0.0015 (19) | 0.0056 (19) | −0.0092 (19) |
C7 | 0.029 (2) | 0.026 (2) | 0.045 (3) | 0.0086 (17) | 0.0082 (19) | 0.0002 (19) |
C8 | 0.031 (2) | 0.056 (3) | 0.025 (2) | 0.002 (2) | 0.0026 (18) | 0.013 (2) |
C9 | 0.029 (2) | 0.056 (3) | 0.036 (3) | −0.008 (2) | −0.0019 (19) | −0.013 (2) |
C10 | 0.029 (2) | 0.030 (2) | 0.042 (3) | −0.0089 (18) | 0.0044 (19) | −0.002 (2) |
C11 | 0.035 (2) | 0.047 (3) | 0.032 (2) | −0.002 (2) | 0.007 (2) | 0.009 (2) |
C12 | 0.035 (2) | 0.044 (3) | 0.031 (2) | 0.003 (2) | 0.0126 (19) | −0.005 (2) |
C13 | 0.030 (2) | 0.025 (2) | 0.040 (3) | 0.0052 (18) | 0.0083 (19) | 0.0108 (18) |
C14 | 0.029 (2) | 0.028 (2) | 0.033 (2) | 0.0027 (17) | 0.0052 (18) | 0.0137 (18) |
C15 | 0.027 (2) | 0.049 (3) | 0.033 (3) | −0.005 (2) | −0.0002 (18) | 0.005 (2) |
C16 | 0.031 (2) | 0.049 (3) | 0.036 (3) | −0.002 (2) | 0.003 (2) | 0.000 (2) |
C17 | 0.036 (2) | 0.037 (3) | 0.030 (2) | 0.0040 (19) | 0.0077 (19) | −0.0145 (19) |
C18 | 0.031 (2) | 0.034 (2) | 0.034 (2) | −0.0014 (18) | 0.0058 (18) | −0.0099 (19) |
Ca1 | 0.0262 (4) | 0.0315 (5) | 0.0298 (4) | 0.0022 (3) | 0.0013 (3) | −0.0012 (4) |
Cl1 | 0.0536 (7) | 0.0444 (7) | 0.0435 (6) | 0.0105 (5) | 0.0403 (6) | 0.0066 (5) |
Cl2 | 0.0398 (6) | 0.0648 (8) | 0.0355 (7) | −0.0135 (6) | −0.0027 (5) | −0.0041 (6) |
Cl3 | 0.0498 (7) | 0.0398 (6) | 0.0434 (7) | 0.0038 (5) | 0.0223 (5) | −0.0032 (5) |
Cl4 | 0.0395 (6) | 0.0496 (7) | 0.0385 (6) | 0.0177 (5) | 0.0106 (5) | 0.0175 (5) |
N1 | 0.037 (2) | 0.0281 (19) | 0.040 (2) | −0.0044 (16) | 0.0069 (17) | −0.0003 (16) |
N2 | 0.0246 (18) | 0.040 (2) | 0.033 (2) | −0.0034 (16) | 0.0050 (15) | 0.0055 (16) |
N3 | 0.0265 (19) | 0.046 (2) | 0.036 (2) | 0.0023 (17) | 0.0043 (16) | −0.0043 (17) |
N4 | 0.032 (2) | 0.040 (2) | 0.030 (2) | −0.0081 (17) | 0.0059 (16) | 0.0008 (16) |
N5 | 0.0269 (18) | 0.045 (2) | 0.028 (2) | −0.0005 (16) | 0.0038 (15) | −0.0053 (16) |
N6 | 0.0276 (19) | 0.039 (2) | 0.033 (2) | 0.0031 (16) | 0.0090 (15) | −0.0057 (16) |
N7 | 0.0263 (18) | 0.0329 (19) | 0.030 (2) | 0.0020 (15) | 0.0028 (15) | −0.0014 (15) |
N8 | 0.0313 (19) | 0.041 (2) | 0.031 (2) | 0.0040 (16) | 0.0079 (16) | 0.0139 (16) |
N9 | 0.0280 (19) | 0.039 (2) | 0.031 (2) | −0.0042 (16) | 0.0006 (15) | 0.0021 (16) |
N10 | 0.034 (2) | 0.039 (2) | 0.034 (2) | −0.0012 (17) | 0.0055 (16) | 0.0014 (17) |
N11 | 0.0234 (18) | 0.044 (2) | 0.032 (2) | −0.0035 (16) | 0.0011 (15) | −0.0023 (17) |
N12 | 0.0258 (18) | 0.0274 (19) | 0.035 (2) | −0.0035 (15) | 0.0033 (15) | −0.0003 (15) |
O1 | 0.0319 (17) | 0.049 (2) | 0.041 (2) | −0.0062 (15) | 0.0093 (15) | 0.0006 (15) |
O2 | 0.0330 (18) | 0.058 (2) | 0.057 (2) | −0.0008 (16) | 0.0135 (16) | −0.0056 (18) |
O3 | 0.0305 (17) | 0.051 (2) | 0.0401 (19) | −0.0005 (15) | 0.0078 (14) | −0.0087 (15) |
O4 | 0.0277 (16) | 0.0439 (18) | 0.0342 (17) | 0.0034 (14) | 0.0051 (13) | 0.0023 (14) |
O5 | 0.0260 (16) | 0.049 (2) | 0.0353 (18) | −0.0048 (14) | −0.0056 (13) | 0.0007 (15) |
O6 | 0.0287 (16) | 0.0379 (18) | 0.0395 (18) | −0.0066 (14) | 0.0010 (13) | 0.0032 (14) |
O7 | 0.032 (3) | 0.051 (4) | 0.040 (4) | 0.011 (3) | 0.002 (3) | 0.008 (3) |
O8 | 0.0425 (19) | 0.0368 (18) | 0.057 (2) | 0.0019 (15) | 0.0160 (17) | −0.0069 (16) |
O9 | 0.0315 (17) | 0.051 (2) | 0.0425 (19) | 0.0078 (15) | −0.0020 (14) | −0.0039 (16) |
O10 | 0.0338 (17) | 0.054 (2) | 0.0378 (18) | −0.0160 (15) | 0.0079 (14) | −0.0038 (16) |
O11 | 0.0356 (17) | 0.0289 (16) | 0.0409 (18) | −0.0001 (13) | −0.0026 (14) | −0.0028 (13) |
O12 | 0.0485 (19) | 0.0417 (19) | 0.0385 (19) | 0.0203 (15) | 0.0130 (15) | −0.0049 (15) |
O1W | 0.0357 (17) | 0.0478 (19) | 0.0422 (19) | −0.0104 (15) | 0.0125 (14) | 0.0183 (15) |
O2W | 0.0388 (18) | 0.0439 (19) | 0.047 (2) | −0.0014 (15) | 0.0131 (15) | −0.0033 (16) |
O3W | 0.0438 (19) | 0.048 (2) | 0.0361 (18) | −0.0156 (16) | −0.0008 (15) | −0.0049 (15) |
Zn1 | 0.0340 (3) | 0.0351 (3) | 0.0277 (3) | −0.0006 (2) | 0.0079 (2) | −0.0002 (2) |
C1—O1 | 1.212 (5) | C14—N2 | 1.453 (5) |
C1—N1 | 1.359 (6) | C14—H14A | 0.9800 |
C1—N2 | 1.361 (6) | C15—N3 | 1.447 (6) |
C2—O2 | 1.209 (5) | C15—N9 | 1.453 (5) |
C2—N3 | 1.362 (6) | C15—C16 | 1.526 (7) |
C2—N4 | 1.370 (6) | C15—H4A | 0.9800 |
C3—O3 | 1.212 (5) | C16—N10 | 1.452 (6) |
C3—N5 | 1.350 (6) | C16—N4 | 1.460 (6) |
C3—N6 | 1.373 (6) | C16—H7A | 0.9800 |
C4—O4 | 1.230 (5) | C17—N5 | 1.442 (6) |
C4—N8 | 1.345 (6) | C17—N11 | 1.453 (6) |
C4—N7 | 1.372 (5) | C17—C18 | 1.540 (6) |
C5—O5 | 1.208 (5) | C17—H11A | 0.9800 |
C5—N9 | 1.357 (6) | C18—N12 | 1.445 (5) |
C5—N10 | 1.380 (6) | C18—N6 | 1.447 (5) |
C6—O6 | 1.241 (5) | C18—H17A | 0.9800 |
C6—N11 | 1.345 (6) | Ca1—O12 | 2.366 (3) |
C6—N12 | 1.357 (6) | Ca1—O10 | 2.376 (3) |
C7—N1 | 1.432 (6) | Ca1—O8 | 2.379 (3) |
C7—N12i | 1.441 (6) | Ca1—O4 | 2.384 (3) |
C7—H5A | 0.9700 | Ca1—O11 | 2.384 (3) |
C7—H5B | 0.9700 | Ca1—O9 | 2.389 (3) |
C8—N2 | 1.436 (6) | Ca1—O5 | 2.479 (3) |
C8—N3 | 1.441 (6) | Cl1—Zn1 | 2.2471 (11) |
C8—H3B | 0.9700 | Cl2—Zn1 | 2.2512 (13) |
C8—H3C | 0.9700 | Cl3—Zn1 | 2.2871 (13) |
C9—N4 | 1.426 (6) | Cl4—Zn1 | 2.2634 (12) |
C9—N5 | 1.450 (6) | N6—C10i | 1.436 (6) |
C9—H10A | 0.9700 | N12—C7i | 1.441 (6) |
C9—H10B | 0.9700 | O7—H7C | 0.8502 |
C10—N7 | 1.427 (6) | O7—H7D | 0.8501 |
C10—N6i | 1.436 (6) | O8—H8C | 0.9701 |
C10—H2B | 0.9700 | O8—H8D | 0.9699 |
C10—H2C | 0.9700 | O9—H9B | 0.8502 |
C11—N8 | 1.432 (6) | O9—H9C | 0.8498 |
C11—N9 | 1.444 (6) | O10—H10C | 0.8500 |
C11—H6A | 0.9700 | O10—H10D | 0.8499 |
C11—H6B | 0.9700 | O11—H11B | 0.9700 |
C12—N10 | 1.438 (6) | O11—H11C | 0.9702 |
C12—N11 | 1.452 (6) | O12—H12D | 0.9697 |
C12—H8A | 0.9700 | O12—H12C | 0.9698 |
C12—H8B | 0.9700 | O1W—H1WA | 0.8501 |
C13—N1 | 1.453 (5) | O1W—H1WB | 0.8497 |
C13—N7 | 1.454 (5) | O2W—H2WA | 0.8498 |
C13—C14 | 1.523 (6) | O2W—H2WC | 0.8498 |
C13—H9A | 0.9800 | O3W—H3WA | 0.9596 |
C14—N8 | 1.447 (5) | O3W—H3WB | 0.9600 |
O1—C1—N1 | 125.9 (4) | O10—Ca1—O4 | 120.34 (12) |
O1—C1—N2 | 125.8 (4) | O8—Ca1—O4 | 75.77 (11) |
N1—C1—N2 | 108.2 (4) | O12—Ca1—O11 | 81.71 (12) |
O2—C2—N3 | 126.8 (5) | O10—Ca1—O11 | 93.68 (12) |
O2—C2—N4 | 125.2 (5) | O8—Ca1—O11 | 154.45 (12) |
N3—C2—N4 | 108.0 (4) | O4—Ca1—O11 | 126.60 (11) |
O3—C3—N5 | 126.1 (4) | O12—Ca1—O9 | 79.11 (12) |
O3—C3—N6 | 126.0 (4) | O10—Ca1—O9 | 78.14 (12) |
N5—C3—N6 | 107.8 (4) | O8—Ca1—O9 | 76.46 (12) |
O4—C4—N8 | 125.7 (4) | O4—Ca1—O9 | 143.67 (12) |
O4—C4—N7 | 125.4 (4) | O11—Ca1—O9 | 78.01 (11) |
N8—C4—N7 | 108.9 (4) | O12—Ca1—O5 | 125.49 (12) |
O5—C5—N9 | 127.3 (4) | O10—Ca1—O5 | 72.47 (11) |
O5—C5—N10 | 125.5 (4) | O8—Ca1—O5 | 131.00 (12) |
N9—C5—N10 | 107.2 (4) | O4—Ca1—O5 | 81.80 (11) |
O6—C6—N11 | 125.2 (4) | O11—Ca1—O5 | 70.18 (11) |
O6—C6—N12 | 124.9 (4) | O9—Ca1—O5 | 134.48 (11) |
N11—C6—N12 | 109.9 (4) | O12—Ca1—H8C | 81.2 |
N1—C7—N12i | 114.5 (3) | O10—Ca1—H8C | 85.3 |
N1—C7—H5A | 108.6 | O8—Ca1—H8C | 23.7 |
N12i—C7—H5A | 108.6 | O4—Ca1—H8C | 94.3 |
N1—C7—H5B | 108.6 | O11—Ca1—H8C | 131.1 |
N12i—C7—H5B | 108.6 | O9—Ca1—H8C | 53.8 |
H5A—C7—H5B | 107.6 | O5—Ca1—H8C | 151.0 |
N2—C8—N3 | 114.8 (4) | O12—Ca1—H11C | 62.9 |
N2—C8—H3B | 108.6 | O10—Ca1—H11C | 107.2 |
N3—C8—H3B | 108.6 | O8—Ca1—H11C | 137.8 |
N2—C8—H3C | 108.6 | O4—Ca1—H11C | 126.1 |
N3—C8—H3C | 108.6 | O11—Ca1—H11C | 21.4 |
H3B—C8—H3C | 107.6 | O9—Ca1—H11C | 66.1 |
N4—C9—N5 | 114.8 (4) | O5—Ca1—H11C | 90.3 |
N4—C9—H10A | 108.6 | H8C—Ca1—H11C | 114.4 |
N5—C9—H10A | 108.6 | C1—N1—C7 | 123.1 (4) |
N4—C9—H10B | 108.6 | C1—N1—C13 | 112.7 (4) |
N5—C9—H10B | 108.6 | C7—N1—C13 | 124.2 (4) |
H10A—C9—H10B | 107.6 | C1—N2—C8 | 122.3 (4) |
N7—C10—N6i | 113.9 (4) | C1—N2—C14 | 111.8 (4) |
N7—C10—H2B | 108.8 | C8—N2—C14 | 124.2 (4) |
N6i—C10—H2B | 108.8 | C2—N3—C8 | 121.1 (4) |
N7—C10—H2C | 108.8 | C2—N3—C15 | 112.5 (4) |
N6i—C10—H2C | 108.8 | C8—N3—C15 | 125.1 (4) |
H2B—C10—H2C | 107.7 | C2—N4—C9 | 122.9 (4) |
N8—C11—N9 | 114.2 (4) | C2—N4—C16 | 111.9 (4) |
N8—C11—H6A | 108.7 | C9—N4—C16 | 124.4 (4) |
N9—C11—H6A | 108.7 | C3—N5—C17 | 113.3 (4) |
N8—C11—H6B | 108.7 | C3—N5—C9 | 122.7 (4) |
N9—C11—H6B | 108.7 | C17—N5—C9 | 123.6 (4) |
H6A—C11—H6B | 107.6 | C3—N6—C10i | 122.2 (3) |
N10—C12—N11 | 114.1 (4) | C3—N6—C18 | 112.4 (4) |
N10—C12—H8A | 108.7 | C10i—N6—C18 | 125.0 (4) |
N11—C12—H8A | 108.7 | C4—N7—C10 | 121.7 (4) |
N10—C12—H8B | 108.7 | C4—N7—C13 | 110.9 (3) |
N11—C12—H8B | 108.7 | C10—N7—C13 | 124.4 (4) |
H8A—C12—H8B | 107.6 | C4—N8—C11 | 123.6 (4) |
N1—C13—N7 | 114.5 (3) | C4—N8—C14 | 112.5 (4) |
N1—C13—C14 | 103.0 (4) | C11—N8—C14 | 123.7 (4) |
N7—C13—C14 | 103.8 (3) | C5—N9—C11 | 122.1 (4) |
N1—C13—H9A | 111.6 | C5—N9—C15 | 113.2 (4) |
N7—C13—H9A | 111.6 | C11—N9—C15 | 124.3 (4) |
C14—C13—H9A | 111.6 | C5—N10—C12 | 123.0 (4) |
N8—C14—N2 | 114.7 (3) | C5—N10—C16 | 112.5 (4) |
N8—C14—C13 | 103.4 (3) | C12—N10—C16 | 123.1 (4) |
N2—C14—C13 | 104.0 (3) | C6—N11—C12 | 122.8 (4) |
N8—C14—H14A | 111.4 | C6—N11—C17 | 111.7 (4) |
N2—C14—H14A | 111.4 | C12—N11—C17 | 124.5 (4) |
C13—C14—H14A | 111.4 | C6—N12—C7i | 122.5 (4) |
N3—C15—N9 | 113.4 (4) | C6—N12—C18 | 111.0 (4) |
N3—C15—C16 | 103.7 (4) | C7i—N12—C18 | 124.1 (4) |
N9—C15—C16 | 103.5 (4) | C4—O4—Ca1 | 153.9 (3) |
N3—C15—H4A | 111.9 | C5—O5—Ca1 | 151.6 (3) |
N9—C15—H4A | 111.9 | H7C—O7—H7D | 103.2 |
C16—C15—H4A | 111.9 | Ca1—O8—H8C | 75.3 |
N10—C16—N4 | 113.9 (4) | Ca1—O8—H8D | 130.5 |
N10—C16—C15 | 103.4 (4) | H8C—O8—H8D | 117.1 |
N4—C16—C15 | 103.5 (4) | Ca1—O9—H9B | 119.6 |
N10—C16—H7A | 111.8 | Ca1—O9—H9C | 119.5 |
N4—C16—H7A | 111.8 | H9B—O9—H9C | 117.4 |
C15—C16—H7A | 111.8 | Ca1—O10—H10C | 116.1 |
N5—C17—N11 | 115.6 (4) | Ca1—O10—H10D | 117.1 |
N5—C17—C18 | 103.2 (3) | H10C—O10—H10D | 113.8 |
N11—C17—C18 | 102.9 (3) | Ca1—O11—H11B | 159.4 |
N5—C17—H11A | 111.5 | H11B—O11—H11C | 117.8 |
N11—C17—H11A | 111.5 | Ca1—O12—H12D | 119.5 |
C18—C17—H11A | 111.5 | Ca1—O12—H12C | 118.9 |
N12—C18—N6 | 114.0 (4) | H12D—O12—H12C | 118.2 |
N12—C18—C17 | 103.9 (3) | H1WA—O1W—H1WB | 109.5 |
N6—C18—C17 | 103.2 (4) | H2WA—O2W—H2WC | 109.5 |
N12—C18—H17A | 111.7 | H3WA—O3W—H3WB | 109.5 |
N6—C18—H17A | 111.7 | Cl1—Zn1—Cl2 | 112.69 (5) |
C17—C18—H17A | 111.7 | Cl1—Zn1—Cl4 | 106.08 (5) |
O12—Ca1—O10 | 157.25 (11) | Cl2—Zn1—Cl4 | 111.50 (6) |
O12—Ca1—O8 | 92.29 (12) | Cl1—Zn1—Cl3 | 109.46 (5) |
O10—Ca1—O8 | 82.28 (12) | Cl2—Zn1—Cl3 | 107.18 (5) |
O12—Ca1—O4 | 79.07 (11) | Cl4—Zn1—Cl3 | 109.93 (5) |
Symmetry code: (i) −x, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O8—H8C···O9 | 0.97 | 2.14 | 2.950 (5) | 141 |
O8—H8D···Cl2ii | 0.97 | 2.36 | 3.137 (4) | 136 |
O9—H9B···O11iii | 0.85 | 2.41 | 2.840 (5) | 112 |
O11—H11B···O1Wiii | 0.97 | 1.97 | 2.742 (4) | 135 |
O12—H12D···O3Wiii | 0.97 | 2.05 | 2.940 (5) | 152 |
O2W—H2WA···O6iii | 0.85 | 2.23 | 2.961 (5) | 145 |
O3W—H3WA···Cl1iii | 0.96 | 2.64 | 3.271 (4) | 124 |
O9—H9C···Cl4 | 0.85 | 2.72 | 3.173 (4) | 115 |
O10—H10C···O1W | 0.85 | 2.41 | 2.833 (4) | 112 |
O11—H11C···O12 | 0.97 | 2.22 | 3.107 (4) | 151 |
O11—H11C···O9 | 0.97 | 2.33 | 3.004 (5) | 126 |
O1W—H1WA···O3W | 0.85 | 1.91 | 2.750 (5) | 173 |
O12—H12C···O3i | 0.97 | 2.09 | 2.710 (4) | 120 |
O1W—H1WB···O1iv | 0.85 | 2.15 | 2.737 (4) | 126 |
O3W—H3WB···O2iv | 0.96 | 1.79 | 2.704 (5) | 158 |
O2W—H2WC···Cl3v | 0.85 | 2.76 | 3.248 (4) | 118 |
Symmetry codes: (i) −x, −y, −z+1; (ii) x−1/2, −y+1/2, z−1/2; (iii) −x+1, −y, −z+1; (iv) x+1, y, z; (v) −x+3/2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Ca2(C36H36N24O12)(H2O)10][ZnCl4]2·7H2O |
Mr | 1797.66 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 291 |
a, b, c (Å) | 14.428 (3), 16.397 (4), 15.798 (3) |
β (°) | 108.987 (3) |
V (Å3) | 3534.0 (13) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.22 |
Crystal size (mm) | 0.28 × 0.24 × 0.22 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.72, 0.76 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17975, 6860, 4939 |
Rint | 0.051 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.061, 0.131, 1.02 |
No. of reflections | 6860 |
No. of parameters | 460 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.37, −0.48 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SAINT, SHELXTL (Bruker, 2000), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
O8—H8C···O9 | 0.97 | 2.14 | 2.950 (5) | 140.5 |
O8—H8D···Cl2i | 0.97 | 2.36 | 3.137 (4) | 136.2 |
O9—H9B···O11ii | 0.85 | 2.41 | 2.840 (5) | 111.8 |
O11—H11B···O1Wii | 0.97 | 1.97 | 2.742 (4) | 135.0 |
O12—H12D···O3Wii | 0.97 | 2.05 | 2.940 (5) | 151.9 |
O2W—H2WA···O6ii | 0.85 | 2.23 | 2.961 (5) | 144.5 |
O3W—H3WA···Cl1ii | 0.96 | 2.64 | 3.271 (4) | 123.6 |
O9—H9C···Cl4 | 0.85 | 2.72 | 3.173 (4) | 114.9 |
O10—H10C···O1W | 0.85 | 2.41 | 2.833 (4) | 111.7 |
O11—H11C···O12 | 0.97 | 2.22 | 3.107 (4) | 151.0 |
O11—H11C···O9 | 0.97 | 2.33 | 3.004 (5) | 125.7 |
O1W—H1WA···O3W | 0.85 | 1.91 | 2.750 (5) | 172.5 |
O12—H12C···O3iii | 0.97 | 2.09 | 2.710 (4) | 120.1 |
O1W—H1WB···O1iv | 0.85 | 2.15 | 2.737 (4) | 125.8 |
O3W—H3WB···O2iv | 0.96 | 1.79 | 2.704 (5) | 157.6 |
O2W—H2WC···Cl3v | 0.85 | 2.76 | 3.248 (4) | 118.0 |
Symmetry codes: (i) x−1/2, −y+1/2, z−1/2; (ii) −x+1, −y, −z+1; (iii) −x, −y, −z+1; (iv) x+1, y, z; (v) −x+3/2, y+1/2, −z+3/2. |
The construction of inorganic-organic hybrid supramolecular compounds of cucurbit[6]uril containing large pores or channels has developed significantly in recent years (Freeman et al., 1981; Gerasko et al., 2002). This paper follows a new structural report on cucurbit[6]uril with both coordinated calcium cation and transition-metal salt anion ZnCl42- as contra-ion.
As shown in Fig.1, each cucurbit[6]uril molecule is coordinated to two calcium cations as a tetradentate ligand, which is differs from the works reported by Freeman and Samsonenko in which cucurbit[6]uril molecules serves as bidentate ligands (Freeman et al., 1981; Samsonenko et al., 2001). The inner cavity of the cucurbit[6]uril molecule is filled with a guest water molecule, O7, its occupied probability is 0.5 and disordered over two positions. Each calcium cation is coordinated by two neighboring carbonyl O atoms (O4 and O5) at a portal of the same cage. The bond lengths are 2.383 (3) and 2.479 (3) Å for Ca1—O4 and Ca1—O5, respectively. Hepta-coordination at the Calcium cation is completed with five water molecules O8, O9, O10, O11 and O12. The Ca—O bond lengths vary from 2.366 (3) to 2.389 (3) Å.