supplementary materials


Acta Cryst. (2007). E63, m1506    [ doi:10.1107/S1600536807019472 ]

Triaquabis[(2-nitrophenylsulfanyl)acetato-[kappa]2O,O']cadmium(II) dihydrate

Y.-J. Hou, Z.-Z. Sun, Y.-H. Yu, B.-Y. Li and G.-F. Hou

Abstract top

The title compound, [Cd(C8H6NO4S)2(H2O)3]·2H2O, has a seven-coordinate CdII atom in a distorted pentagonal-bipyramidal geometry defined by four carboxylate O atoms from two (2-nitrophenylsulfanyl)acetate groups and three O atoms from three water molecules. The complex molecules are linked together by intermolecular hydrogen bonds involving the uncoordinated water molecules, resulting in a two-dimensional network.

Comment top

The structures of the metal derivative sof 4-nitrophenylsulfanylacetic acid are known for nickel and cobalt (Gao et al., 2006; Shi et al., 2006). The structures of the 2-nitrophenylsulfanylacetic acid analogs are yet unknown.

The asymmetric unit of (I) consists of a cadmium(II) atom, two 2-nitrophenylsulfanylacetate groups, three coordinated water molecules and two uncoordinated water molecules (Fig.1). The CdII atom exists in a pentagonal bipyramidal configuration, with the equatorial plane being defined by the atoms O3, O4, O7, O8 and O10. Atoms O9 and O11 occupy the axial sites.

The structure is stabilized by hydrogen bonding interactions (Table 1) that link the individual components into a two-dimensional layer structure (Fig. 2).

Related literature top

For related literature, see: Gao et al. (2006); Shi et al., 2007; Nobles & Thompson (1965).

Experimental top

2-Nitrophenylsulfanylacetic acid was prepared by nucleophilic reaction of chloroacetic acid and 2-nitrothiophenol under basic conditions. (Nobles et al., 1965). Cadmium(II) nitrate tetrhydrate (0.617 g, 2 mmol) and 2-nitrophenylsulfanylacetic acid (0.394 g, 2 mmol) were dissolved in water and the pH was adjusted to 6 with 0.01M sodium hydroxide; yellow crystals separated from the filtered solution after several days.

Refinement top

H atoms bound to C atoms were placed in calculated positions and treated as riding on their parent atoms, with C—H = 0.93 Å (aromatic C) or C—H = 0.97 Å (methylene C), and with Uiso(H) = 1.2Ueq(C). Water H atoms were initially located in a difference Fourier map but they were treated as riding on their parent atoms with O—H = 0.85 Å and with Uiso(H) = 1.5Ueq(O).

Computing details top

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXL97.

Figures top
[Figure 1] Fig. 1. The molecular structure of (I), showing displacement ellipsoids at the 30% probability level for non-H atoms. Dashed lines indicate the hydrogen bonding interactions.
[Figure 2] Fig. 2. A partial packing view, showing the two-dimensional hydrogen-bonding plan. Dashed lines indicate the hydrogen-bonding interactions.
Triaquabis[(2-nitrophenylsulfanyl)acetato-κ2O,O']cadmium(II) dihydrate top
Crystal data top
[Cd(C8H6NO4S)2(H2O)3]·2H2OF(000) = 1264
Mr = 626.91Dx = 1.778 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 16259 reflections
a = 19.550 (7) Åθ = 6.2–55.0°
b = 8.216 (3) ŵ = 1.18 mm1
c = 14.703 (7) ÅT = 293 K
β = 97.350 (18)°Block, colorless
V = 2342.3 (17) Å30.24 × 0.21 × 0.15 mm
Z = 4
Data collection top
Rigaku R-AXIS RAPID
diffractometer
5356 independent reflections
Radiation source: fine-focus sealed tube3874 reflections with I > 2σ(I)
graphiteRint = 0.036
ω scanθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)
h = 2525
Tmin = 0.768, Tmax = 0.841k = 910
21719 measured reflectionsl = 1919
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.0397P)2]
where P = (Fo2 + 2Fc2)/3
5356 reflections(Δ/σ)max = 0.001
307 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = 0.31 e Å3
Crystal data top
[Cd(C8H6NO4S)2(H2O)3]·2H2OV = 2342.3 (17) Å3
Mr = 626.91Z = 4
Monoclinic, P21/cMo Kα radiation
a = 19.550 (7) ŵ = 1.18 mm1
b = 8.216 (3) ÅT = 293 K
c = 14.703 (7) Å0.24 × 0.21 × 0.15 mm
β = 97.350 (18)°
Data collection top
Rigaku R-AXIS RAPID
diffractometer
5356 independent reflections
Absorption correction: multi-scan
(ABSCOR; Higashi, 1995)
3874 reflections with I > 2σ(I)
Tmin = 0.768, Tmax = 0.841Rint = 0.036
21719 measured reflectionsθmax = 27.5°
Refinement top
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.075Δρmax = 0.61 e Å3
S = 1.00Δρmin = 0.31 e Å3
5356 reflectionsAbsolute structure: ?
307 parametersFlack parameter: ?
0 restraintsRogers parameter: ?
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.30664 (11)0.4539 (3)0.04068 (16)0.0378 (5)
C20.36823 (13)0.3932 (4)0.06608 (19)0.0489 (7)
C30.42292 (14)0.4928 (5)0.0796 (2)0.0663 (9)
H10.46340.44780.09570.080*
C40.41770 (15)0.6556 (5)0.0695 (2)0.0736 (10)
H20.45460.72270.07840.088*
C50.35827 (16)0.7214 (4)0.0462 (2)0.0620 (8)
H30.35470.83370.04030.074*
C60.30320 (13)0.6233 (3)0.03103 (18)0.0474 (6)
H40.26340.67040.01420.057*
C70.18219 (11)0.4613 (3)0.02960 (17)0.0372 (5)
H5A0.20780.51560.08190.045*
H6B0.16520.54370.01490.045*
C80.12181 (11)0.3701 (3)0.06027 (16)0.0353 (5)
C90.30084 (11)0.3969 (3)0.29923 (16)0.0351 (5)
C100.36354 (12)0.3215 (3)0.30859 (18)0.0423 (6)
C110.42148 (13)0.4089 (4)0.3233 (2)0.0598 (8)
H70.46260.35520.32870.072*
C120.41807 (15)0.5750 (4)0.3297 (2)0.0649 (9)
H80.45700.63460.33920.078*
C130.35742 (14)0.6531 (4)0.3222 (2)0.0570 (7)
H90.35530.76590.32690.068*
C140.29904 (13)0.5667 (3)0.30782 (18)0.0457 (6)
H100.25800.62210.30380.055*
C150.17024 (11)0.4421 (3)0.24590 (17)0.0360 (5)
H11A0.19510.51650.20230.043*
H12B0.15210.50360.29990.043*
C160.11144 (11)0.3636 (3)0.20362 (16)0.0356 (5)
Cd40.003378 (7)0.259713 (19)0.126486 (11)0.03280 (7)
N10.37706 (13)0.2193 (4)0.0799 (2)0.0645 (7)
N20.37058 (12)0.1454 (3)0.30343 (17)0.0561 (6)
O10.43488 (12)0.1638 (4)0.0765 (2)0.1115 (10)
O20.32566 (12)0.1340 (3)0.09545 (19)0.0847 (8)
O30.07383 (8)0.4577 (2)0.08316 (12)0.0436 (4)
O40.12048 (9)0.2188 (2)0.06435 (14)0.0498 (5)
O50.42770 (11)0.0854 (3)0.3025 (2)0.1051 (10)
O60.31884 (10)0.0624 (2)0.30212 (16)0.0672 (6)
O70.10346 (9)0.2133 (2)0.20501 (14)0.0531 (5)
O80.07214 (8)0.4579 (2)0.16682 (12)0.0419 (4)
O90.05832 (9)0.23693 (18)0.01830 (12)0.0393 (4)
H130.09620.18940.01300.059*
H140.06630.32710.04600.059*
O100.00194 (8)0.0128 (2)0.12473 (11)0.0482 (5)
H150.02160.07040.15740.072*
H160.02100.07370.08860.072*
O110.06326 (8)0.26541 (18)0.27275 (12)0.0391 (4)
H170.06870.17520.30110.059*
H180.10210.30970.26920.059*
O120.18552 (11)0.4145 (3)0.28311 (18)0.0932 (9)
H190.17780.51460.27120.140*
H200.22800.39760.30130.140*
O130.17204 (9)0.5729 (2)0.48872 (14)0.0618 (5)
H210.16700.55560.43120.093*
H220.16740.48390.51670.093*
S10.23822 (3)0.32432 (8)0.02060 (5)0.04267 (16)
S70.22770 (3)0.28581 (7)0.27683 (5)0.04085 (15)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.0292 (11)0.0449 (14)0.0400 (14)0.0044 (11)0.0076 (10)0.0032 (11)
C20.0357 (13)0.0665 (19)0.0459 (16)0.0000 (13)0.0102 (11)0.0022 (13)
C30.0369 (14)0.100 (3)0.064 (2)0.0121 (17)0.0161 (13)0.0071 (19)
C40.0475 (17)0.099 (3)0.076 (2)0.0333 (19)0.0151 (15)0.013 (2)
C50.0679 (19)0.0563 (18)0.062 (2)0.0250 (16)0.0098 (15)0.0089 (15)
C60.0418 (13)0.0467 (15)0.0558 (17)0.0100 (12)0.0140 (12)0.0055 (12)
C70.0323 (12)0.0354 (12)0.0463 (14)0.0037 (10)0.0145 (10)0.0009 (10)
C80.0317 (11)0.0394 (13)0.0359 (13)0.0035 (10)0.0089 (10)0.0036 (10)
C90.0299 (11)0.0399 (13)0.0368 (13)0.0039 (10)0.0093 (9)0.0012 (10)
C100.0341 (12)0.0477 (14)0.0467 (16)0.0032 (12)0.0107 (10)0.0005 (12)
C110.0311 (13)0.083 (2)0.068 (2)0.0007 (15)0.0155 (13)0.0002 (17)
C120.0463 (16)0.069 (2)0.082 (2)0.0195 (16)0.0214 (15)0.0056 (17)
C130.0546 (17)0.0488 (16)0.070 (2)0.0160 (14)0.0189 (14)0.0064 (15)
C140.0386 (13)0.0402 (14)0.0606 (17)0.0036 (11)0.0145 (12)0.0041 (12)
C150.0303 (11)0.0355 (12)0.0444 (14)0.0030 (10)0.0131 (10)0.0023 (10)
C160.0279 (11)0.0428 (13)0.0367 (14)0.0052 (11)0.0066 (10)0.0057 (11)
Cd40.03174 (10)0.02779 (10)0.04123 (11)0.00020 (7)0.01369 (7)0.00157 (7)
N10.0470 (14)0.0758 (19)0.0743 (19)0.0177 (14)0.0217 (12)0.0025 (14)
N20.0441 (13)0.0549 (15)0.0705 (18)0.0129 (12)0.0116 (11)0.0017 (12)
O10.0553 (14)0.113 (2)0.172 (3)0.0363 (15)0.0375 (16)0.003 (2)
O20.0604 (14)0.0629 (15)0.134 (2)0.0074 (12)0.0241 (14)0.0206 (14)
O30.0363 (9)0.0424 (10)0.0559 (11)0.0021 (8)0.0209 (8)0.0063 (8)
O40.0513 (11)0.0340 (10)0.0687 (13)0.0051 (8)0.0252 (9)0.0025 (9)
O50.0455 (12)0.0763 (17)0.196 (3)0.0287 (13)0.0247 (15)0.0053 (18)
O60.0552 (12)0.0437 (11)0.1051 (18)0.0057 (10)0.0193 (12)0.0036 (11)
O70.0490 (10)0.0401 (10)0.0753 (14)0.0072 (8)0.0272 (9)0.0033 (9)
O80.0340 (8)0.0452 (10)0.0501 (11)0.0005 (8)0.0190 (7)0.0040 (8)
O90.0437 (9)0.0312 (8)0.0447 (10)0.0014 (7)0.0118 (7)0.0014 (7)
O100.0691 (13)0.0251 (8)0.0578 (12)0.0010 (7)0.0365 (10)0.0005 (7)
O110.0388 (8)0.0347 (9)0.0451 (10)0.0015 (7)0.0100 (7)0.0019 (7)
O120.0616 (14)0.0817 (16)0.132 (2)0.0254 (13)0.0041 (14)0.0425 (15)
O130.0671 (12)0.0495 (11)0.0703 (14)0.0076 (10)0.0146 (10)0.0037 (10)
S10.0346 (3)0.0338 (3)0.0629 (4)0.0024 (3)0.0192 (3)0.0011 (3)
S70.0341 (3)0.0326 (3)0.0588 (4)0.0031 (3)0.0174 (3)0.0013 (3)
Geometric parameters (Å, °) top
C1—C21.398 (3)C14—H100.9300
C1—C61.401 (3)C15—C161.519 (3)
C1—S11.764 (2)C15—S71.802 (2)
C2—C31.381 (4)C15—H11A0.9700
C2—N11.456 (4)C15—H12B0.9700
C3—C41.352 (5)C16—O71.244 (3)
C3—H10.9300C16—O81.261 (3)
C4—C51.364 (4)Cd4—O102.2392 (18)
C4—H20.9300Cd4—O32.2743 (17)
C5—C61.386 (3)Cd4—O112.314 (2)
C5—H30.9300Cd4—O92.316 (2)
C6—H40.9300Cd4—O82.3251 (17)
C7—C81.515 (3)Cd4—O72.541 (2)
C7—S11.794 (2)Cd4—O42.593 (2)
C7—H5A0.9700N1—O11.214 (3)
C7—H6B0.9700N1—O21.223 (3)
C8—O41.244 (3)N2—O51.219 (3)
C8—O31.262 (3)N2—O61.222 (3)
C9—C101.396 (3)O9—H130.8501
C9—C141.401 (3)O9—H140.8500
C9—S71.763 (2)O10—H150.8501
C10—C111.381 (4)O10—H160.8499
C10—N21.454 (4)O11—H170.8500
C11—C121.369 (4)O11—H180.8500
C11—H70.9300O12—H190.8500
C12—C131.365 (4)O12—H200.8500
C12—H80.9300O13—H210.8500
C13—C141.383 (3)O13—H220.8500
C13—H90.9300
C2—C1—C6115.8 (2)S7—C15—H12B109.8
C2—C1—S1121.8 (2)H11A—C15—H12B108.3
C6—C1—S1122.37 (19)O7—C16—O8122.3 (2)
C3—C2—C1122.5 (3)O7—C16—C15121.0 (2)
C3—C2—N1116.9 (3)O8—C16—C15116.7 (2)
C1—C2—N1120.6 (2)O10—Cd4—O3135.97 (6)
C4—C3—C2120.0 (3)O10—Cd4—O1192.01 (5)
C4—C3—H1120.0O3—Cd4—O1189.62 (6)
C2—C3—H1120.0O10—Cd4—O984.51 (6)
C3—C4—C5119.9 (3)O3—Cd4—O993.62 (6)
C3—C4—H2120.0O11—Cd4—O9176.36 (5)
C5—C4—H2120.0O10—Cd4—O8134.08 (6)
C4—C5—C6120.9 (3)O3—Cd4—O889.87 (7)
C4—C5—H3119.5O11—Cd4—O890.64 (6)
C6—C5—H3119.5O9—Cd4—O891.03 (6)
C5—C6—C1120.9 (3)O10—Cd4—O781.10 (6)
C5—C6—H4119.6O3—Cd4—O7142.85 (6)
C1—C6—H4119.6O11—Cd4—O785.89 (7)
C8—C7—S1110.62 (16)O9—Cd4—O792.51 (7)
C8—C7—H5A109.5O8—Cd4—O753.39 (6)
S1—C7—H5A109.5O10—Cd4—O482.92 (5)
C8—C7—H6B109.5O3—Cd4—O453.15 (6)
S1—C7—H6B109.5O11—Cd4—O488.02 (7)
H5A—C7—H6B108.1O9—Cd4—O492.59 (7)
O4—C8—O3122.4 (2)O8—Cd4—O4142.99 (6)
O4—C8—C7122.0 (2)O7—Cd4—O4162.68 (6)
O3—C8—C7115.6 (2)O1—N1—O2122.1 (3)
C10—C9—C14116.5 (2)O1—N1—C2119.3 (3)
C10—C9—S7122.14 (19)O2—N1—C2118.6 (2)
C14—C9—S7121.40 (18)O5—N2—O6122.2 (3)
C11—C10—C9122.2 (3)O5—N2—C10118.9 (2)
C11—C10—N2116.8 (2)O6—N2—C10118.9 (2)
C9—C10—N2121.0 (2)C8—O3—Cd499.46 (14)
C12—C11—C10119.7 (3)C8—O4—Cd484.99 (14)
C12—C11—H7120.2C16—O7—Cd487.26 (14)
C10—C11—H7120.2C16—O8—Cd496.93 (14)
C13—C12—C11119.9 (3)Cd4—O9—H13108.1
C13—C12—H8120.1Cd4—O9—H14114.3
C11—C12—H8120.1H13—O9—H14109.6
C12—C13—C14120.9 (3)Cd4—O10—H15123.8
C12—C13—H9119.5Cd4—O10—H16126.1
C14—C13—H9119.5H15—O10—H16109.8
C13—C14—C9120.9 (2)Cd4—O11—H17117.1
C13—C14—H10119.6Cd4—O11—H18107.6
C9—C14—H10119.6H17—O11—H18110.2
C16—C15—S7109.21 (16)H19—O12—H20111.3
C16—C15—H11A109.8H21—O13—H22109.4
S7—C15—H11A109.8C1—S1—C7101.89 (11)
C16—C15—H12B109.8C9—S7—C15102.98 (11)
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
O9—H13···O13i0.851.842.682 (3)173
O11—H18···O120.851.832.673 (3)170
O9—H14···O3ii0.851.852.688 (2)168
O10—H15···O11i0.851.942.777 (2)169
O10—H16···O9iii0.851.902.738 (2)171
O11—H17···O8i0.851.852.677 (2)165
O13—H21···O120.852.533.332 (4)157
O13—H21···O7iv0.852.573.204 (3)132
O12—H19···O7iv0.852.242.950 (3)141
O12—H19···S7iv0.852.573.309 (2)146
O12—H20···O2v0.852.303.099 (3)157
O13—H22···O4v0.852.072.879 (3)160
O13—H22···S1v0.852.973.520 (2)124
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, −y+1, −z; (iii) −x, −y, −z; (iv) −x, y+1/2, −z+1/2; (v) x, −y+1/2, z+1/2.
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
O9—H13···O13i0.851.842.682 (3)173
O11—H18···O120.851.832.673 (3)170
O9—H14···O3ii0.851.852.688 (2)168
O10—H15···O11i0.851.942.777 (2)169
O10—H16···O9iii0.851.902.738 (2)171
O11—H17···O8i0.851.852.677 (2)165
O13—H21···O120.852.533.332 (4)157
O13—H21···O7iv0.852.573.204 (3)132
O12—H19···O7iv0.852.242.950 (3)141
O12—H19···S7iv0.852.573.309 (2)146
O12—H20···O2v0.852.303.099 (3)157
O13—H22···O4v0.852.072.879 (3)160
O13—H22···S1v0.852.973.520 (2)124
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, −y+1, −z; (iii) −x, −y, −z; (iv) −x, y+1/2, −z+1/2; (v) x, −y+1/2, z+1/2.
references
References top

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Rigaku/MSC (2002). CrystalStructure. Rigaku/MSC Inc., The Woodlands, Texas, USA.

Sheldrick, G. M. (1997a). SHELXL97 and SHELXS97. University of Göttingen, Germany.

Sheldrick, G. M. (1997b). SHELXTL. Version 5.10. Bruker AXS Inc., Madison, Wisconsin, USA.

Shi, A.-E., Zhang, S., Li, B.-Y., Hou, Y.-J. & Hou, G.-F. (2007). Acta Cryst. E63, m265–m266.