Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807021691/at2285sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807021691/at2285Isup2.hkl |
CCDC reference: 651402
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C) = 0.004 Å
- R factor = 0.038
- wR factor = 0.096
- Data-to-parameter ratio = 16.8
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 26.31 From the CIF: _reflns_number_total 2500 Count of symmetry unique reflns 1387 Completeness (_total/calc) 180.25% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1113 Fraction of Friedel pairs measured 0.802 Are heavy atom types Z>Si present yes PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 2
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A mixture of the phenyl isothiocyanate (0.1 mol), and 4-methylpiperidine (0.1 mol) was stirred in refluxing ethanol (30 ml) for 5 h to afford the title compound (0.085 mol, yield 85%). Single crystals (I) suitable for X-ray measurements were obtained by recrystallization from ethanol at room temperature.
The H atom bonded to N atom were found from a difference Fourier map and refined freely. The other H atoms were fixed geometrically and allowed to ride on their attached atoms, with C—H = 0.93 - 0.97 Å, and Uiso=1.2 - 1.5Ueq(C).
Thiourea derivatives have been used extensively as organical intermediate in the field of high polymer chemistry (Ballabeni et al., 1999). As part of our search for new compounds we synthesized the title compound (I), and describe its structure here.
Bond lengths and angles in (I) are generally normal. The C1—S1 distance of 1.679 (3) Å is shorter than the reported distance [1.700 Å] (Ramnathan et al.,1996). The C1—N2 distance of 1.338 (3)Å is longer than the reported distance [1.339 Å] (Guzman et al., 1991).
In the crystal structure, there is an intermolecular N—H···S hydrogen bonding interactions.
For related literature, see: Ballabeni et al. (1999); Guzman & Rodriguez (1991); Ramnathan et al. (1996).
Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell refinement: CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXTL.
Fig. 1. The structure of the title compound showing 30% probability displacement ellipsoids and the atom-numbering scheme. |
C13H18N2S | F(000) = 504 |
Mr = 234.35 | Dx = 1.219 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 2276 reflections |
a = 11.654 (6) Å | θ = 2.5–24.7° |
b = 11.335 (6) Å | µ = 0.23 mm−1 |
c = 9.711 (5) Å | T = 294 K |
V = 1282.7 (12) Å3 | Block, colourless |
Z = 4 | 0.22 × 0.20 × 0.12 mm |
Enraf–Nonius CAD-4 diffractometer | 2500 independent reflections |
Radiation source: fine-focus sealed tube | 1842 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
φ and ω scans | θmax = 26.3°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→11 |
Tmin = 0.951, Tmax = 0.973 | k = −14→13 |
6919 measured reflections | l = −11→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0494P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.004 |
2500 reflections | Δρmax = 0.16 e Å−3 |
149 parameters | Δρmin = −0.20 e Å−3 |
2 restraints | Absolute structure: Flack (1983), 1113 Freidel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (9) |
C13H18N2S | V = 1282.7 (12) Å3 |
Mr = 234.35 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 11.654 (6) Å | µ = 0.23 mm−1 |
b = 11.335 (6) Å | T = 294 K |
c = 9.711 (5) Å | 0.22 × 0.20 × 0.12 mm |
Enraf–Nonius CAD-4 diffractometer | 2500 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1842 reflections with I > 2σ(I) |
Tmin = 0.951, Tmax = 0.973 | Rint = 0.041 |
6919 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | Δρmax = 0.16 e Å−3 |
S = 1.05 | Δρmin = −0.20 e Å−3 |
2500 reflections | Absolute structure: Flack (1983), 1113 Freidel pairs |
149 parameters | Absolute structure parameter: 0.01 (9) |
2 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.15114 (6) | 0.85016 (5) | 0.69896 (7) | 0.0586 (2) | |
N1 | 0.21408 (18) | 0.7337 (2) | 0.4733 (2) | 0.0561 (6) | |
H1 | 0.230 (3) | 0.750 (3) | 0.393 (3) | 0.084* | |
N2 | 0.06394 (17) | 0.86019 (17) | 0.4473 (2) | 0.0553 (5) | |
C1 | 0.14138 (18) | 0.8122 (2) | 0.5322 (2) | 0.0449 (5) | |
C2 | −0.0131 (3) | 0.9545 (2) | 0.4919 (3) | 0.0666 (8) | |
H2A | −0.0173 | 1.0149 | 0.4213 | 0.080* | |
H2B | 0.0163 | 0.9905 | 0.5754 | 0.080* | |
C3 | −0.1314 (2) | 0.9046 (3) | 0.5182 (3) | 0.0714 (8) | |
H3A | −0.1823 | 0.9678 | 0.5465 | 0.086* | |
H3B | −0.1272 | 0.8480 | 0.5930 | 0.086* | |
C4 | −0.1804 (2) | 0.8449 (2) | 0.3921 (3) | 0.0625 (7) | |
H4 | −0.1920 | 0.9052 | 0.3211 | 0.075* | |
C5 | −0.0940 (2) | 0.7553 (3) | 0.3370 (3) | 0.0618 (7) | |
H5A | −0.0902 | 0.6890 | 0.4000 | 0.074* | |
H5B | −0.1210 | 0.7258 | 0.2489 | 0.074* | |
C6 | 0.0251 (2) | 0.8056 (3) | 0.3187 (3) | 0.0662 (7) | |
H6A | 0.0777 | 0.7432 | 0.2925 | 0.079* | |
H6B | 0.0244 | 0.8641 | 0.2458 | 0.079* | |
C7 | −0.2953 (2) | 0.7869 (3) | 0.4205 (5) | 0.1005 (12) | |
H7A | −0.2837 | 0.7163 | 0.4734 | 0.151* | |
H7B | −0.3318 | 0.7672 | 0.3349 | 0.151* | |
H7C | −0.3433 | 0.8403 | 0.4712 | 0.151* | |
C8 | 0.28608 (18) | 0.65270 (19) | 0.5418 (2) | 0.0442 (6) | |
C9 | 0.24709 (19) | 0.58503 (19) | 0.6493 (3) | 0.0507 (6) | |
H9 | 0.1727 | 0.5952 | 0.6820 | 0.061* | |
C10 | 0.3175 (2) | 0.5026 (2) | 0.7084 (4) | 0.0651 (7) | |
H10 | 0.2910 | 0.4583 | 0.7826 | 0.078* | |
C11 | 0.4265 (2) | 0.4845 (2) | 0.6598 (3) | 0.0712 (8) | |
H11 | 0.4733 | 0.4272 | 0.6992 | 0.085* | |
C12 | 0.4657 (2) | 0.5516 (3) | 0.5526 (3) | 0.0671 (7) | |
H12 | 0.5397 | 0.5398 | 0.5194 | 0.081* | |
C13 | 0.3969 (2) | 0.6364 (2) | 0.4931 (3) | 0.0559 (6) | |
H13 | 0.4246 | 0.6823 | 0.4210 | 0.067* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0768 (4) | 0.0630 (4) | 0.0360 (3) | 0.0054 (3) | −0.0046 (4) | −0.0083 (3) |
N1 | 0.0530 (11) | 0.0858 (14) | 0.0296 (11) | 0.0221 (11) | 0.0020 (9) | 0.0003 (11) |
N2 | 0.0546 (12) | 0.0706 (13) | 0.0408 (12) | 0.0157 (11) | −0.0036 (10) | 0.0008 (10) |
C1 | 0.0474 (13) | 0.0556 (12) | 0.0317 (13) | 0.0012 (11) | 0.0009 (10) | 0.0042 (10) |
C2 | 0.0763 (19) | 0.0518 (14) | 0.0717 (19) | 0.0145 (13) | −0.0087 (15) | 0.0011 (14) |
C3 | 0.0698 (18) | 0.0628 (16) | 0.082 (2) | 0.0265 (15) | 0.0112 (15) | −0.0144 (16) |
C4 | 0.0566 (16) | 0.0542 (16) | 0.077 (2) | 0.0135 (13) | 0.0042 (14) | 0.0066 (14) |
C5 | 0.0646 (18) | 0.0712 (16) | 0.0496 (16) | 0.0164 (14) | −0.0044 (13) | −0.0074 (13) |
C6 | 0.0600 (16) | 0.103 (2) | 0.0356 (14) | 0.0166 (16) | −0.0064 (12) | 0.0019 (14) |
C7 | 0.066 (2) | 0.093 (2) | 0.142 (4) | 0.0042 (18) | 0.015 (2) | −0.007 (2) |
C8 | 0.0398 (12) | 0.0587 (14) | 0.0341 (12) | 0.0052 (11) | −0.0069 (9) | −0.0092 (11) |
C9 | 0.0404 (12) | 0.0553 (13) | 0.0563 (16) | −0.0050 (12) | 0.0013 (11) | −0.0005 (12) |
C10 | 0.0597 (16) | 0.0615 (13) | 0.0740 (18) | −0.0040 (13) | 0.0020 (16) | 0.0146 (17) |
C11 | 0.0607 (16) | 0.0774 (17) | 0.076 (2) | 0.0143 (14) | −0.0046 (14) | 0.0198 (16) |
C12 | 0.0456 (14) | 0.0969 (19) | 0.0589 (16) | 0.0173 (15) | −0.0021 (13) | 0.0030 (17) |
C13 | 0.0440 (13) | 0.0821 (18) | 0.0417 (13) | 0.0086 (12) | 0.0043 (11) | 0.0049 (13) |
S1—C1 | 1.679 (3) | C5—H5B | 0.9700 |
N1—C1 | 1.355 (3) | C6—H6A | 0.9700 |
N1—C8 | 1.411 (3) | C6—H6B | 0.9700 |
N1—H1 | 0.83 (2) | C7—H7A | 0.9600 |
N2—C1 | 1.338 (3) | C7—H7B | 0.9600 |
N2—C2 | 1.462 (3) | C7—H7C | 0.9600 |
N2—C6 | 1.466 (3) | C8—C9 | 1.373 (3) |
C2—C3 | 1.511 (4) | C8—C13 | 1.388 (3) |
C2—H2A | 0.9700 | C9—C10 | 1.370 (3) |
C2—H2B | 0.9700 | C9—H9 | 0.9300 |
C3—C4 | 1.512 (4) | C10—C11 | 1.371 (4) |
C3—H3A | 0.9700 | C10—H10 | 0.9300 |
C3—H3B | 0.9700 | C11—C12 | 1.368 (4) |
C4—C7 | 1.518 (4) | C11—H11 | 0.9300 |
C4—C5 | 1.527 (4) | C12—C13 | 1.378 (4) |
C4—H4 | 0.9800 | C12—H12 | 0.9300 |
C5—C6 | 1.511 (4) | C13—H13 | 0.9300 |
C5—H5A | 0.9700 | ||
C1—N1—C8 | 126.9 (2) | H5A—C5—H5B | 107.7 |
C1—N1—H1 | 113 (2) | N2—C6—C5 | 110.1 (2) |
C8—N1—H1 | 118 (2) | N2—C6—H6A | 109.6 |
C1—N2—C2 | 122.0 (2) | C5—C6—H6A | 109.6 |
C1—N2—C6 | 124.2 (2) | N2—C6—H6B | 109.6 |
C2—N2—C6 | 111.8 (2) | C5—C6—H6B | 109.6 |
N2—C1—N1 | 115.4 (2) | H6A—C6—H6B | 108.2 |
N2—C1—S1 | 122.40 (18) | C4—C7—H7A | 109.5 |
N1—C1—S1 | 122.20 (18) | C4—C7—H7B | 109.5 |
N2—C2—C3 | 109.7 (2) | H7A—C7—H7B | 109.5 |
N2—C2—H2A | 109.7 | C4—C7—H7C | 109.5 |
C3—C2—H2A | 109.7 | H7A—C7—H7C | 109.5 |
N2—C2—H2B | 109.7 | H7B—C7—H7C | 109.5 |
C3—C2—H2B | 109.7 | C9—C8—C13 | 119.5 (2) |
H2A—C2—H2B | 108.2 | C9—C8—N1 | 121.7 (2) |
C2—C3—C4 | 112.0 (2) | C13—C8—N1 | 118.7 (2) |
C2—C3—H3A | 109.2 | C10—C9—C8 | 120.1 (2) |
C4—C3—H3A | 109.2 | C10—C9—H9 | 119.9 |
C2—C3—H3B | 109.2 | C8—C9—H9 | 119.9 |
C4—C3—H3B | 109.2 | C9—C10—C11 | 120.8 (3) |
H3A—C3—H3B | 107.9 | C9—C10—H10 | 119.6 |
C3—C4—C7 | 112.3 (3) | C11—C10—H10 | 119.6 |
C3—C4—C5 | 109.4 (2) | C12—C11—C10 | 119.2 (3) |
C7—C4—C5 | 110.9 (2) | C12—C11—H11 | 120.4 |
C3—C4—H4 | 108.0 | C10—C11—H11 | 120.4 |
C7—C4—H4 | 108.0 | C11—C12—C13 | 120.8 (2) |
C5—C4—H4 | 108.0 | C11—C12—H12 | 119.6 |
C6—C5—C4 | 113.3 (2) | C13—C12—H12 | 119.6 |
C6—C5—H5A | 108.9 | C12—C13—C8 | 119.5 (3) |
C4—C5—H5A | 108.9 | C12—C13—H13 | 120.3 |
C6—C5—H5B | 108.9 | C8—C13—H13 | 120.3 |
C4—C5—H5B | 108.9 | ||
C2—N2—C1—N1 | −174.0 (2) | C1—N2—C6—C5 | 105.0 (3) |
C6—N2—C1—N1 | 23.7 (3) | C2—N2—C6—C5 | −58.9 (3) |
C2—N2—C1—S1 | 3.8 (3) | C4—C5—C6—N2 | 53.6 (3) |
C6—N2—C1—S1 | −158.5 (2) | C1—N1—C8—C9 | 45.6 (3) |
C8—N1—C1—N2 | −165.4 (2) | C1—N1—C8—C13 | −138.4 (3) |
C8—N1—C1—S1 | 16.8 (3) | C13—C8—C9—C10 | 0.4 (4) |
C1—N2—C2—C3 | −103.0 (3) | N1—C8—C9—C10 | 176.4 (2) |
C6—N2—C2—C3 | 61.3 (3) | C8—C9—C10—C11 | −1.5 (4) |
N2—C2—C3—C4 | −58.1 (3) | C9—C10—C11—C12 | 1.4 (5) |
C2—C3—C4—C7 | 175.9 (2) | C10—C11—C12—C13 | −0.2 (4) |
C2—C3—C4—C5 | 52.2 (3) | C11—C12—C13—C8 | −0.8 (4) |
C3—C4—C5—C6 | −50.4 (3) | C9—C8—C13—C12 | 0.7 (4) |
C7—C4—C5—C6 | −174.9 (3) | N1—C8—C13—C12 | −175.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···S1i | 0.83 (2) | 2.60 (2) | 3.362 (3) | 155 (3) |
Symmetry code: (i) −x+1/2, y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H18N2S |
Mr | 234.35 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 294 |
a, b, c (Å) | 11.654 (6), 11.335 (6), 9.711 (5) |
V (Å3) | 1282.7 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.23 |
Crystal size (mm) | 0.22 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.951, 0.973 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6919, 2500, 1842 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.624 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.096, 1.05 |
No. of reflections | 2500 |
No. of parameters | 149 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.16, −0.20 |
Absolute structure | Flack (1983), 1113 Freidel pairs |
Absolute structure parameter | 0.01 (9) |
Computer programs: CAD-4 Software (Enraf–Nonius, 1989), CAD-4 Software, NRCVAX (Gabe et al., 1989), SHELXS97 (Sheldrick, 1997a), SHELXL97 (Sheldrick, 1997a), SHELXTL (Sheldrick, 1997b), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···S1i | 0.83 (2) | 2.60 (2) | 3.362 (3) | 155 (3) |
Symmetry code: (i) −x+1/2, y, z−1/2. |
Thiourea derivatives have been used extensively as organical intermediate in the field of high polymer chemistry (Ballabeni et al., 1999). As part of our search for new compounds we synthesized the title compound (I), and describe its structure here.
Bond lengths and angles in (I) are generally normal. The C1—S1 distance of 1.679 (3) Å is shorter than the reported distance [1.700 Å] (Ramnathan et al.,1996). The C1—N2 distance of 1.338 (3)Å is longer than the reported distance [1.339 Å] (Guzman et al., 1991).
In the crystal structure, there is an intermolecular N—H···S hydrogen bonding interactions.