Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807028668/er2035sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807028668/er2035Isup2.hkl |
CCDC reference: 654786
Key indicators
- Single-crystal X-ray study
- T = 294 K
- Mean (C-C) = 0.004 Å
- R factor = 0.036
- wR factor = 0.097
- Data-to-parameter ratio = 13.8
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.77 PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.64 Ratio PLAT420_ALERT_2_C D-H Without Acceptor N13 - H13C ... ? PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 4 PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.849(10) ...... 4.00 su-Ra O2W -H2WA 1.555 1.555 PLAT731_ALERT_1_C Bond Calc 0.85(4), Rep 0.848(10) ...... 4.00 su-Ra O2W -H2WB 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Ra O2W -H1# 1.555 1.555 PLAT735_ALERT_1_C D-H Calc 0.85(4), Rep 0.850(10) ...... 4.00 su-Ra O2W -H3# 1.555 1.555 PLAT736_ALERT_1_C H...A Calc 2.20(4), Rep 2.199(12) ...... 3.33 su-Ra H3# -N8 1.555 1.655
Alert level G ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.775 Tmax scaled 0.775 Tmin scaled 0.756 PLAT794_ALERT_5_G Check Predicted Bond Valency for Cu1 (2) 2.14 PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 4
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 9 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
TThe ligand, 2-(1H-tetrazol-5-yl)pyrimidine (L) was synthesized according to the literature method (Demko & Sharpless, 2001). CuCl2.2H2O (34 mg, 0.2 mmol) and L (60 mg, 0.4 mmol) were dissolved in ammonium hydroxide (20%, 10 ml). The solution was filtered, and then filtrate was allowed to stand for about 10 days. Blue crystals of (I) were isolated in about 30% yield.
H atoms bound to carbon and amine were included in calculated positions and treated in the subsequent refinement as riding atoms, with C—H = 0.93 and N—H = 0.89 Å and Uiso(H) = 1.2 and 1.5 Ueq(C and N), respectively. The H atoms of the water molecules were located in Fourier difference maps and refined with isotropic displacement parameters set at 1.5 times those of the parent O atoms.
The crystal structures of Fe(II) and Co(II) complexes with 5-(pyrimidin-2-yl)tetrazolate ligand have been reported recently (Rodríguez et al., 2005), which feature a two-dimensional square-grid-like network. And, the ligands coordinate to metal atoms through one of the pyrimidinyl nitrogen atoms and the 1- and 3-positon tetrazole nitrogen atoms. The title complex, diamminobis[5-(pyrimidin-2-yl-κN1)tetrazolato-κN1]copper(II) dehydrate (I) performs a mono-nuclear structure (Fig. 1), in which the center CuII atom, located on a normal position, is normally coordinated by two NH3 and two ligand molecules using tetrazole N atoms in 1-position to form a square geometry. Simultaneously, two apical positions in CuII atom form weak coordination (Cu1-N11 = 2.429 (2) and Cu1-N5 = 2.728 (2) Å) with two pyrimidinyl N atoms of two ligands, thus giving a highly distorted octahedral geometry (see Table 1). In addition, a three-dimensional supramolecular framework (Fig. 2) is formed by the intermolecular extensive N-H···O, N-H···N, O-H···N and O-H···O hydrogen-bond interactions between parking water molecules and complex molecules. The hydrogen bond parameters are listed in Table 2.
For related literature, see: Demko & Sharpless (2001); Rodríguez et al. (2005).
Data collection: SMART (Bruker, 1998); cell refinement: SMART; data reduction: SHELXTL (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97; molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL.
Fig. 1. The molecular structure of (I). Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. Three-dimensional hydrogen-bonded network. |
[Cu(C5H3N6)2(NH3)2]·2H2O | Z = 2 |
Mr = 427.91 | F(000) = 438 |
Triclinic, P1 | Dx = 1.605 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.1533 (12) Å | Cell parameters from 3035 reflections |
b = 9.5708 (16) Å | θ = 2.5–26.4° |
c = 13.155 (2) Å | µ = 1.28 mm−1 |
α = 97.048 (3)° | T = 294 K |
β = 90.214 (2)° | Block, blue |
γ = 97.777 (3)° | 0.22 × 0.22 × 0.20 mm |
V = 885.4 (2) Å3 |
Bruker SMART CCD area-detector diffractometer | 3549 independent reflections |
Radiation source: fine-focus sealed tube | 3104 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
φ and ω scans | θmax = 26.4°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −6→8 |
Tmin = 0.975, Tmax = 1.000 | k = −11→10 |
5086 measured reflections | l = −16→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.097 | w = 1/[σ2(Fo2) + (0.0583P)2 + 0.2049P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
3549 reflections | Δρmax = 0.56 e Å−3 |
257 parameters | Δρmin = −0.63 e Å−3 |
4 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.096 (5) |
[Cu(C5H3N6)2(NH3)2]·2H2O | γ = 97.777 (3)° |
Mr = 427.91 | V = 885.4 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.1533 (12) Å | Mo Kα radiation |
b = 9.5708 (16) Å | µ = 1.28 mm−1 |
c = 13.155 (2) Å | T = 294 K |
α = 97.048 (3)° | 0.22 × 0.22 × 0.20 mm |
β = 90.214 (2)° |
Bruker SMART CCD area-detector diffractometer | 3549 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 3104 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 1.000 | Rint = 0.023 |
5086 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 4 restraints |
wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.56 e Å−3 |
3549 reflections | Δρmin = −0.63 e Å−3 |
257 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.23179 (3) | 0.95624 (3) | 0.245828 (19) | 0.02515 (13) | |
N1 | 0.2492 (3) | 1.0675 (2) | 0.38683 (14) | 0.0257 (4) | |
N2 | 0.2601 (3) | 1.2084 (2) | 0.41174 (16) | 0.0352 (5) | |
N3 | 0.2667 (3) | 1.2353 (2) | 0.51209 (17) | 0.0402 (5) | |
N4 | 0.2606 (3) | 1.1139 (2) | 0.55440 (15) | 0.0333 (5) | |
N5 | 0.2149 (3) | 0.7757 (2) | 0.39173 (18) | 0.0384 (5) | |
N6 | 0.2597 (4) | 0.8204 (2) | 0.57417 (18) | 0.0448 (6) | |
N7 | 0.2131 (3) | 0.8657 (2) | 0.09642 (15) | 0.0285 (4) | |
N8 | 0.1767 (3) | 0.7331 (2) | 0.04961 (17) | 0.0389 (5) | |
N9 | 0.1783 (4) | 0.7390 (3) | −0.05057 (18) | 0.0469 (6) | |
N10 | 0.2150 (3) | 0.8732 (3) | −0.07049 (16) | 0.0410 (5) | |
N11 | 0.2867 (3) | 1.1532 (2) | 0.14470 (15) | 0.0314 (4) | |
N12 | 0.2938 (3) | 1.1822 (3) | −0.03200 (16) | 0.0418 (5) | |
C1 | 0.2495 (3) | 1.0122 (2) | 0.47534 (17) | 0.0246 (5) | |
C2 | 0.2402 (3) | 0.8601 (2) | 0.48099 (18) | 0.0282 (5) | |
C3 | 0.2101 (5) | 0.6381 (3) | 0.3973 (3) | 0.0554 (8) | |
H3A | 0.1921 | 0.5751 | 0.3373 | 0.067* | |
C4 | 0.2309 (5) | 0.5847 (3) | 0.4888 (3) | 0.0641 (10) | |
H4A | 0.2287 | 0.4879 | 0.4916 | 0.077* | |
C5 | 0.2547 (5) | 0.6800 (3) | 0.5747 (3) | 0.0642 (10) | |
H5A | 0.2683 | 0.6461 | 0.6373 | 0.077* | |
C6 | 0.2364 (3) | 0.9490 (3) | 0.02177 (17) | 0.0284 (5) | |
C7 | 0.2752 (3) | 1.1045 (3) | 0.04536 (18) | 0.0291 (5) | |
C8 | 0.3217 (4) | 1.2939 (3) | 0.1692 (2) | 0.0407 (6) | |
H8A | 0.3323 | 1.3316 | 0.2379 | 0.049* | |
C9 | 0.3426 (4) | 1.3842 (3) | 0.0953 (2) | 0.0478 (7) | |
H9A | 0.3662 | 1.4822 | 0.1124 | 0.057* | |
C10 | 0.3270 (4) | 1.3236 (3) | −0.0047 (2) | 0.0502 (7) | |
H10A | 0.3399 | 1.3827 | −0.0560 | 0.060* | |
N14 | 0.5061 (3) | 0.9386 (3) | 0.24816 (16) | 0.0369 (5) | |
H14A | 0.5254 | 0.8682 | 0.2835 | 0.055* | |
H14B | 0.5704 | 1.0196 | 0.2777 | 0.055* | |
H14C | 0.5449 | 0.9203 | 0.1843 | 0.055* | |
N13 | −0.0473 (3) | 0.9502 (3) | 0.24504 (15) | 0.0383 (5) | |
H13A | −0.0986 | 0.8813 | 0.2801 | 0.057* | |
H13B | −0.0915 | 0.9334 | 0.1807 | 0.057* | |
H13C | −0.0768 | 1.0332 | 0.2739 | 0.057* | |
O1W | 0.6222 (4) | 0.6186 (4) | 0.2726 (2) | 0.0799 (8) | |
H2WA | 0.895 (7) | 0.449 (3) | 0.145 (4) | 0.120* | |
H1WA | 0.655 (7) | 0.643 (6) | 0.3348 (14) | 0.120* | |
O2W | 0.9450 (4) | 0.5292 (3) | 0.17569 (19) | 0.0651 (6) | |
H2WB | 1.008 (6) | 0.579 (4) | 0.135 (3) | 0.098* | |
H1WB | 0.731 (3) | 0.610 (6) | 0.251 (3) | 0.098* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.01906 (17) | 0.0352 (2) | 0.02059 (18) | 0.00532 (11) | −0.00056 (10) | −0.00088 (11) |
N1 | 0.0269 (10) | 0.0287 (10) | 0.0217 (9) | 0.0063 (8) | 0.0015 (7) | 0.0010 (8) |
N2 | 0.0455 (13) | 0.0277 (10) | 0.0331 (11) | 0.0075 (9) | 0.0035 (9) | 0.0042 (9) |
N3 | 0.0575 (15) | 0.0301 (11) | 0.0322 (12) | 0.0083 (10) | 0.0039 (10) | −0.0019 (9) |
N4 | 0.0457 (12) | 0.0274 (10) | 0.0259 (10) | 0.0048 (9) | 0.0015 (9) | 0.0000 (8) |
N5 | 0.0390 (12) | 0.0318 (11) | 0.0415 (13) | 0.0038 (9) | 0.0001 (10) | −0.0051 (9) |
N6 | 0.0580 (15) | 0.0366 (12) | 0.0408 (13) | 0.0028 (11) | −0.0064 (11) | 0.0130 (10) |
N7 | 0.0244 (10) | 0.0329 (10) | 0.0269 (10) | 0.0040 (8) | −0.0010 (8) | −0.0012 (8) |
N8 | 0.0427 (13) | 0.0353 (12) | 0.0363 (12) | 0.0059 (10) | −0.0024 (9) | −0.0054 (9) |
N9 | 0.0540 (15) | 0.0445 (14) | 0.0380 (13) | 0.0049 (11) | −0.0038 (11) | −0.0101 (10) |
N10 | 0.0474 (13) | 0.0467 (14) | 0.0263 (11) | 0.0057 (11) | −0.0018 (9) | −0.0056 (10) |
N11 | 0.0341 (11) | 0.0340 (11) | 0.0259 (10) | 0.0057 (9) | 0.0019 (8) | 0.0016 (8) |
N12 | 0.0441 (13) | 0.0507 (14) | 0.0296 (11) | −0.0030 (11) | −0.0026 (9) | 0.0113 (10) |
C1 | 0.0214 (10) | 0.0305 (12) | 0.0211 (11) | 0.0040 (9) | 0.0002 (8) | 0.0004 (9) |
C2 | 0.0238 (11) | 0.0277 (12) | 0.0327 (12) | 0.0026 (9) | 0.0006 (9) | 0.0039 (10) |
C3 | 0.0542 (19) | 0.0307 (15) | 0.076 (2) | 0.0039 (13) | −0.0033 (16) | −0.0113 (14) |
C4 | 0.067 (2) | 0.0276 (15) | 0.099 (3) | 0.0053 (14) | −0.006 (2) | 0.0125 (17) |
C5 | 0.081 (2) | 0.0436 (18) | 0.074 (2) | 0.0062 (17) | −0.0107 (19) | 0.0299 (17) |
C6 | 0.0199 (10) | 0.0409 (13) | 0.0234 (11) | 0.0045 (9) | −0.0001 (8) | −0.0007 (9) |
C7 | 0.0202 (11) | 0.0407 (13) | 0.0258 (12) | 0.0033 (9) | 0.0002 (9) | 0.0033 (10) |
C8 | 0.0456 (15) | 0.0358 (14) | 0.0389 (14) | 0.0051 (11) | 0.0020 (12) | −0.0015 (11) |
C9 | 0.0487 (17) | 0.0344 (14) | 0.0589 (19) | −0.0019 (12) | 0.0016 (14) | 0.0089 (13) |
C10 | 0.0549 (18) | 0.0475 (17) | 0.0496 (17) | −0.0036 (14) | 0.0000 (14) | 0.0239 (14) |
N14 | 0.0262 (10) | 0.0590 (14) | 0.0258 (10) | 0.0120 (10) | −0.0029 (8) | 0.0000 (9) |
N13 | 0.0230 (10) | 0.0663 (15) | 0.0250 (10) | 0.0072 (10) | −0.0001 (8) | 0.0023 (10) |
O1W | 0.0835 (19) | 0.094 (2) | 0.0572 (16) | 0.0256 (17) | −0.0117 (15) | −0.0251 (15) |
O2W | 0.0788 (18) | 0.0543 (14) | 0.0550 (14) | 0.0030 (12) | 0.0053 (12) | −0.0155 (11) |
Cu1—N1 | 2.0170 (18) | N12—C10 | 1.345 (4) |
Cu1—N5 | 2.728 (2) | C1—C2 | 1.459 (3) |
Cu1—N7 | 2.0447 (19) | C3—C4 | 1.379 (5) |
Cu1—N11 | 2.429 (2) | C3—H3A | 0.9300 |
Cu1—N13 | 1.990 (2) | C4—C5 | 1.357 (5) |
Cu1—N14 | 1.992 (2) | C4—H4A | 0.9300 |
N1—C1 | 1.337 (3) | C5—H5A | 0.9300 |
N1—N2 | 1.339 (3) | C6—C7 | 1.471 (3) |
N2—N3 | 1.313 (3) | C8—C9 | 1.374 (4) |
N3—N4 | 1.344 (3) | C8—H8A | 0.9300 |
N4—C1 | 1.329 (3) | C9—C10 | 1.369 (4) |
N5—C3 | 1.324 (4) | C9—H9A | 0.9300 |
N5—C2 | 1.338 (3) | C10—H10A | 0.9300 |
N6—C2 | 1.339 (3) | N14—H14A | 0.8900 |
N6—C5 | 1.341 (4) | N14—H14B | 0.8900 |
N7—N8 | 1.332 (3) | N14—H14C | 0.8900 |
N7—C6 | 1.336 (3) | N13—H13A | 0.8900 |
N8—N9 | 1.326 (3) | N13—H13B | 0.8900 |
N9—N10 | 1.334 (3) | N13—H13C | 0.8900 |
N10—C6 | 1.332 (3) | O1W—H1WA | 0.846 (10) |
N11—C7 | 1.331 (3) | O1W—H1WB | 0.843 (10) |
N11—C8 | 1.334 (3) | O2W—H2WA | 0.849 (10) |
N12—C7 | 1.329 (3) | O2W—H2WB | 0.848 (10) |
N13—Cu1—N14 | 173.45 (9) | C4—C3—H3A | 118.8 |
N13—Cu1—N1 | 90.18 (8) | C5—C4—C3 | 117.0 (3) |
N14—Cu1—N1 | 91.95 (8) | C5—C4—H4A | 121.5 |
N13—Cu1—N7 | 88.98 (8) | C3—C4—H4A | 121.5 |
N14—Cu1—N7 | 89.61 (8) | N6—C5—C4 | 123.4 (3) |
N1—Cu1—N7 | 173.28 (7) | N6—C5—H5A | 118.3 |
N13—Cu1—N11 | 94.55 (8) | C4—C5—H5A | 118.3 |
N14—Cu1—N11 | 91.24 (8) | N10—C6—N7 | 111.5 (2) |
N1—Cu1—N11 | 98.88 (7) | N10—C6—C7 | 127.4 (2) |
N7—Cu1—N11 | 74.54 (7) | N7—C6—C7 | 121.1 (2) |
C1—N1—N2 | 106.16 (18) | N12—C7—N11 | 126.4 (2) |
C1—N1—Cu1 | 125.67 (16) | N12—C7—C6 | 118.5 (2) |
N2—N1—Cu1 | 128.17 (15) | N11—C7—C6 | 115.1 (2) |
N3—N2—N1 | 107.98 (19) | N11—C8—C9 | 121.5 (3) |
N2—N3—N4 | 110.3 (2) | N11—C8—H8A | 119.2 |
C1—N4—N3 | 104.76 (19) | C9—C8—H8A | 119.2 |
C3—N5—C2 | 115.6 (3) | C10—C9—C8 | 117.1 (3) |
C2—N6—C5 | 114.4 (3) | C10—C9—H9A | 121.5 |
N8—N7—C6 | 105.87 (19) | C8—C9—H9A | 121.5 |
N8—N7—Cu1 | 134.76 (17) | N12—C10—C9 | 122.9 (3) |
C6—N7—Cu1 | 119.35 (16) | N12—C10—H10A | 118.6 |
N9—N8—N7 | 107.8 (2) | C9—C10—H10A | 118.6 |
N8—N9—N10 | 110.8 (2) | Cu1—N14—H14A | 109.5 |
C6—N10—N9 | 104.1 (2) | Cu1—N14—H14B | 109.5 |
C7—N11—C8 | 116.9 (2) | H14A—N14—H14B | 109.5 |
C7—N11—Cu1 | 109.90 (16) | Cu1—N14—H14C | 109.5 |
C8—N11—Cu1 | 133.21 (17) | H14A—N14—H14C | 109.5 |
C7—N12—C10 | 115.2 (2) | H14B—N14—H14C | 109.5 |
N4—C1—N1 | 110.8 (2) | Cu1—N13—H13A | 109.5 |
N4—C1—C2 | 126.1 (2) | Cu1—N13—H13B | 109.5 |
N1—C1—C2 | 123.1 (2) | H13A—N13—H13B | 109.5 |
N5—C2—N6 | 127.2 (2) | Cu1—N13—H13C | 109.5 |
N5—C2—C1 | 116.0 (2) | H13A—N13—H13C | 109.5 |
N6—C2—C1 | 116.8 (2) | H13B—N13—H13C | 109.5 |
N5—C3—C4 | 122.4 (3) | H1WA—O1W—H1WB | 96 (5) |
N5—C3—H3A | 118.8 | H2WA—O2W—H2WB | 112 (5) |
N13—Cu1—N1—C1 | 92.85 (19) | C3—N5—C2—N6 | −0.5 (4) |
N14—Cu1—N1—C1 | −80.95 (19) | C3—N5—C2—C1 | 178.8 (2) |
N11—Cu1—N1—C1 | −172.51 (18) | C5—N6—C2—N5 | 0.8 (4) |
N13—Cu1—N1—N2 | −86.2 (2) | C5—N6—C2—C1 | −178.4 (3) |
N14—Cu1—N1—N2 | 100.0 (2) | N4—C1—C2—N5 | 175.0 (2) |
N11—Cu1—N1—N2 | 8.5 (2) | N1—C1—C2—N5 | −5.5 (3) |
C1—N1—N2—N3 | 0.0 (3) | N4—C1—C2—N6 | −5.7 (4) |
Cu1—N1—N2—N3 | 179.19 (16) | N1—C1—C2—N6 | 173.8 (2) |
N1—N2—N3—N4 | 0.1 (3) | C2—N5—C3—C4 | −0.4 (5) |
N2—N3—N4—C1 | −0.2 (3) | N5—C3—C4—C5 | 0.7 (5) |
N13—Cu1—N7—N8 | −83.5 (2) | C2—N6—C5—C4 | −0.4 (5) |
N14—Cu1—N7—N8 | 90.1 (2) | C3—C4—C5—N6 | −0.3 (6) |
N11—Cu1—N7—N8 | −178.6 (2) | N9—N10—C6—N7 | −0.3 (3) |
N14—Cu1—N7—C6 | −91.74 (18) | N9—N10—C6—C7 | −178.6 (2) |
N11—Cu1—N7—C6 | −0.35 (16) | N8—N7—C6—N10 | 0.3 (3) |
C6—N7—N8—N9 | −0.1 (3) | Cu1—N7—C6—N10 | −178.39 (16) |
Cu1—N7—N8—N9 | 178.26 (17) | N8—N7—C6—C7 | 178.7 (2) |
N7—N8—N9—N10 | −0.1 (3) | Cu1—N7—C6—C7 | 0.0 (3) |
N8—N9—N10—C6 | 0.3 (3) | C10—N12—C7—N11 | −0.2 (4) |
N13—Cu1—N11—C7 | −86.98 (16) | C10—N12—C7—C6 | 179.3 (2) |
N14—Cu1—N11—C7 | 89.95 (16) | C8—N11—C7—N12 | −0.5 (4) |
N1—Cu1—N11—C7 | −177.88 (15) | Cu1—N11—C7—N12 | 178.6 (2) |
N7—Cu1—N11—C7 | 0.69 (15) | C8—N11—C7—C6 | 180.0 (2) |
N13—Cu1—N11—C8 | 91.9 (2) | Cu1—N11—C7—C6 | −0.9 (2) |
N14—Cu1—N11—C8 | −91.1 (2) | N10—C6—C7—N12 | −0.7 (4) |
N1—Cu1—N11—C8 | 1.0 (2) | N7—C6—C7—N12 | −178.8 (2) |
N7—Cu1—N11—C8 | 179.6 (3) | N10—C6—C7—N11 | 178.8 (2) |
N3—N4—C1—N1 | 0.2 (3) | N7—C6—C7—N11 | 0.7 (3) |
N3—N4—C1—C2 | 179.8 (2) | C7—N11—C8—C9 | 0.8 (4) |
N2—N1—C1—N4 | −0.2 (3) | Cu1—N11—C8—C9 | −178.1 (2) |
Cu1—N1—C1—N4 | −179.34 (15) | N11—C8—C9—C10 | −0.4 (4) |
N2—N1—C1—C2 | −179.7 (2) | C7—N12—C10—C9 | 0.6 (4) |
Cu1—N1—C1—C2 | 1.1 (3) | C8—C9—C10—N12 | −0.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N14—H14A···O1W | 0.89 | 2.56 | 3.332 (4) | 145 |
N14—H14A···N4i | 0.89 | 2.59 | 3.209 (3) | 127 |
N14—H14B···N6i | 0.89 | 2.52 | 3.345 (3) | 154 |
N14—H14C···N12ii | 0.89 | 2.48 | 3.339 (3) | 162 |
N13—H13A···N4iii | 0.89 | 2.47 | 3.137 (3) | 132 |
N13—H13B···N12iv | 0.89 | 2.48 | 3.325 (3) | 158 |
O2W—H2WA···N9v | 0.85 (1) | 2.07 (2) | 2.901 (3) | 168 (5) |
O1W—H1WA···N3i | 0.85 (1) | 2.23 (2) | 3.053 (3) | 165 (5) |
O1W—H1WA···N4i | 0.85 (1) | 2.59 (4) | 3.227 (3) | 133 (5) |
O2W—H2WB···N8vi | 0.85 (1) | 2.20 (1) | 3.041 (4) | 172 (4) |
O1W—H1WB···O2W | 0.84 (1) | 2.01 (2) | 2.825 (4) | 161 (5) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, −y+2, −z; (iii) −x, −y+2, −z+1; (iv) −x, −y+2, −z; (v) −x+1, −y+1, −z; (vi) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C5H3N6)2(NH3)2]·2H2O |
Mr | 427.91 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 294 |
a, b, c (Å) | 7.1533 (12), 9.5708 (16), 13.155 (2) |
α, β, γ (°) | 97.048 (3), 90.214 (2), 97.777 (3) |
V (Å3) | 885.4 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.28 |
Crystal size (mm) | 0.22 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.975, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5086, 3549, 3104 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.097, 1.04 |
No. of reflections | 3549 |
No. of parameters | 257 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.56, −0.63 |
Computer programs: SMART (Bruker, 1998), SMART, SHELXTL (Bruker, 1998), SHELXS97 (Sheldrick, 1997), SHELXL97, SHELXTL.
Cu1—N1 | 2.0170 (18) | Cu1—N11 | 2.429 (2) |
Cu1—N5 | 2.728 (2) | Cu1—N13 | 1.990 (2) |
Cu1—N7 | 2.0447 (19) | Cu1—N14 | 1.992 (2) |
N13—Cu1—N14 | 173.45 (9) | N1—Cu1—N7 | 173.28 (7) |
N13—Cu1—N1 | 90.18 (8) | N13—Cu1—N11 | 94.55 (8) |
N14—Cu1—N1 | 91.95 (8) | N14—Cu1—N11 | 91.24 (8) |
N13—Cu1—N7 | 88.98 (8) | N1—Cu1—N11 | 98.88 (7) |
N14—Cu1—N7 | 89.61 (8) | N7—Cu1—N11 | 74.54 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
N14—H14A···O1W | 0.89 | 2.56 | 3.332 (4) | 145.2 |
N14—H14A···N4i | 0.89 | 2.59 | 3.209 (3) | 126.9 |
N14—H14B···N6i | 0.89 | 2.52 | 3.345 (3) | 154.0 |
N14—H14C···N12ii | 0.89 | 2.48 | 3.339 (3) | 162.2 |
N13—H13A···N4iii | 0.89 | 2.47 | 3.137 (3) | 132.2 |
N13—H13B···N12iv | 0.89 | 2.48 | 3.325 (3) | 158.2 |
O2W—H2WA···N9v | 0.85 (1) | 2.07 (2) | 2.901 (3) | 168 (5) |
O1W—H1WA···N3i | 0.85 (1) | 2.23 (2) | 3.053 (3) | 165 (5) |
O1W—H1WA···N4i | 0.85 (1) | 2.59 (4) | 3.227 (3) | 133 (5) |
O2W—H2WB···N8vi | 0.85 (1) | 2.199 (12) | 3.041 (4) | 172 (4) |
O1W—H1WB···O2W | 0.84 (1) | 2.01 (2) | 2.825 (4) | 161 (5) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, −y+2, −z; (iii) −x, −y+2, −z+1; (iv) −x, −y+2, −z; (v) −x+1, −y+1, −z; (vi) x+1, y, z. |
The crystal structures of Fe(II) and Co(II) complexes with 5-(pyrimidin-2-yl)tetrazolate ligand have been reported recently (Rodríguez et al., 2005), which feature a two-dimensional square-grid-like network. And, the ligands coordinate to metal atoms through one of the pyrimidinyl nitrogen atoms and the 1- and 3-positon tetrazole nitrogen atoms. The title complex, diamminobis[5-(pyrimidin-2-yl-κN1)tetrazolato-κN1]copper(II) dehydrate (I) performs a mono-nuclear structure (Fig. 1), in which the center CuII atom, located on a normal position, is normally coordinated by two NH3 and two ligand molecules using tetrazole N atoms in 1-position to form a square geometry. Simultaneously, two apical positions in CuII atom form weak coordination (Cu1-N11 = 2.429 (2) and Cu1-N5 = 2.728 (2) Å) with two pyrimidinyl N atoms of two ligands, thus giving a highly distorted octahedral geometry (see Table 1). In addition, a three-dimensional supramolecular framework (Fig. 2) is formed by the intermolecular extensive N-H···O, N-H···N, O-H···N and O-H···O hydrogen-bond interactions between parking water molecules and complex molecules. The hydrogen bond parameters are listed in Table 2.