Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807035064/at2343sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807035064/at2343Isup2.hkl |
CCDC reference: 659097
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.002 Å
- R factor = 0.029
- wR factor = 0.066
- Data-to-parameter ratio = 18.4
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.68 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.42 Ratio
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.47 From the CIF: _reflns_number_total 5134 Count of symmetry unique reflns 2923 Completeness (_total/calc) 175.64% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 2211 Fraction of Friedel pairs measured 0.756 Are heavy atom types Z>Si present yes PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K PLAT791_ALERT_1_G Confirm the Absolute Configuration of C1 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C2 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C3 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C4 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C5 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C10 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C11 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C12 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C13 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C14 = . R
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 13 ALERT level G = General alerts; check 12 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The title compound (I) was prepared from 1,2-O-Isopropylidene-3-thio-α-D-glucofuranose by oxidation in hot methanol involving oxygen from the air. Subsequently it was recrystallized by cooling hot methanol solution.
All H atoms were geometrically constrained to ride on their parent atom, fixing the bond lengths at 0.82, 0.96, 0.97 and 0.98 Å for hydroxyl, methine, methylene and methyl H atoms, respectively, and with Uiso(H)= 1.2Ueq(1.5Ueq for methyl and hydroxyl) of the carrier atom. –OH hydrogen atoms were refined by use of a rotating group refinement (AFIX 147). The absolute configuration determined from anomalous scattering effects is as expected from the synthesis.
The title compound, (I), was prepared as a part of a project aimed at the synthesis of potential gelators of organic solvents (Luboradzki et al., 2005). The class of saccharide-based gelators having free OH groups and the glucofuranose fragment are able to form gels with huge spectrum of organic solvents. According to the driving forces responsible for molecular aggregation they may be classified as hydrogen-bond-based gelators (Terech & Weiss 1997).
The crystal structure of (I) (Fig. 1) contains one independent molecule of the title compound per asymmetric unit. The molecules are bound into one dimensional hydrogen bond-based chains (generated by the screw axis along the a axis) utilizing all hydroxy H atoms (Fig. 2). Each molecule is involved in four hydrogen bonds as proton donor and in four as acceptor.
For low molecular weight?? organogelators see: Terech & Weiss (1997); Luboradzki et al. (2005). For related literature, see: Risbood et al. (1981).
Data collection: COLLECT (Nonius, 1997); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997) and PLATON (Spek, 2003).
C18H30O10S2 | F(000) = 1000 |
Mr = 470.54 | Dx = 1.385 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 17407 reflections |
a = 8.7266 (1) Å | θ = 1.0–27.5° |
b = 14.4778 (4) Å | µ = 0.29 mm−1 |
c = 17.8606 (5) Å | T = 293 K |
V = 2256.54 (9) Å3 | Plate, colourless |
Z = 4 | 0.4 × 0.2 × 0.1 mm |
Nonius KappaCCD diffractometer | 4969 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.032 |
Graphite monochromator | θmax = 27.5°, θmin = 2.6° |
Detector resolution: 1242 (horizontal) x 1152 (vertical) pixels, CCD pixel size is 22.5 x 22.5 µm which gives at the imput a pixel of 110 x 110 µm (with 2 x 2 binning) pixels mm-1 | h = −11→11 |
189 frames via φ rotation (rotation angle 1.9°) and 2*287 s per frame and 13 frames via ω rotation (rotation angle 1.9°) and 2*287 s per frame scans | k = −18→18 |
22012 measured reflections | l = −23→23 |
5134 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0134P)2 + 1.4932P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
5134 reflections | Δρmax = 0.21 e Å−3 |
279 parameters | Δρmin = −0.21 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 2211 Freidel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.02 (5) |
C18H30O10S2 | V = 2256.54 (9) Å3 |
Mr = 470.54 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.7266 (1) Å | µ = 0.29 mm−1 |
b = 14.4778 (4) Å | T = 293 K |
c = 17.8606 (5) Å | 0.4 × 0.2 × 0.1 mm |
Nonius KappaCCD diffractometer | 4969 reflections with I > 2σ(I) |
22012 measured reflections | Rint = 0.032 |
5134 independent reflections |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.066 | Δρmax = 0.21 e Å−3 |
S = 1.09 | Δρmin = −0.21 e Å−3 |
5134 reflections | Absolute structure: Flack (1983), 2211 Freidel pairs |
279 parameters | Absolute structure parameter: 0.02 (5) |
0 restraints |
Experimental. Synthesis of 1,2-O-Isopropylidene-3-thio-α-D-glucofuranose: To a suspension of LiAlH4 (160 mg, 4.2 mM) in THF (25 ml) cooled in ice bath a solution of 5,6-di-O-acetyl-1,2-O-isopropylidene-3-thiocyanato-α-D-glucofuranose (Risbood et al.1981) (1, 629 mg, 1.8 mM) in THF (5 ml) was slowly added and stirred at room temp. for 3 h under an argon atmosphere. An excess of LiAlH4 was decomposed by addition of ethyl acetate (1 ml), then the reaction mixture was cautiously acidified by addition of 5% aqueous NH4Cl and solvents were evaporated to dryness. Column chromatography of the residue (hexane ? ethyl acetate, 5:1 than 1:1, then hexane ? ethyl acetate - methanol, 5:3:1) yielded 301 mg (70%) of the title compound as foam. [α]D2 -9.7 (c 1/2, chloroform ? methanol, 1:1); 1H NMR (CD3OD) δ: 5.86 (d, 1H, J1,2 3.5 Hz, H-1), 4.66 (d, 1H, H-2), 4.18 (dd, 1H, J4,3 3.7, J4,5 9.4 Hz, H-4), 3.88 (m, 1H, H-5), 3.75 (dd, 1H, J6,5 2.8, J6,6? 11.6 Hz, H-6), 3.58 (dd, 1H, J6?,5 5.7, H-6?), 3.48 (d, 1H, H-3), 3.31 (m, 1H, SH), 1.46 (s, 3H, CH3), 1.29 (s, 3H, CH3). 13C NMR (CD3OD) δ: 112.9 (C), 106.0 (C-1), 88.7, 79.7, 71.8, 65.2 (C-6), 46.3 (C-3), 26.8 (CH3), 26.4 (CH3). HR—MS (ESI) calc. for C9H16NaO5S [M+Na]+: 259.0611. Found: 259.0615. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.06709 (5) | 0.57977 (3) | 0.73252 (2) | 0.01991 (9) | |
S2 | 0.25277 (5) | 0.54599 (3) | 0.66943 (2) | 0.01858 (9) | |
O1 | −0.05475 (13) | 0.73533 (8) | 0.84580 (6) | 0.0182 (2) | |
O2 | 0.13077 (14) | 0.82781 (9) | 0.90160 (7) | 0.0221 (3) | |
O3 | 0.29050 (13) | 0.80305 (8) | 0.80408 (7) | 0.0193 (3) | |
O4 | −0.15521 (16) | 0.76064 (10) | 0.65014 (7) | 0.0264 (3) | |
H4O | −0.2082 | 0.7303 | 0.6213 | 0.040* | |
O5 | −0.45500 (14) | 0.75117 (9) | 0.71783 (7) | 0.0227 (3) | |
H5O | −0.5321 | 0.7658 | 0.7413 | 0.034* | |
O6 | 0.35095 (14) | 0.49495 (8) | 0.50471 (7) | 0.0197 (3) | |
O7 | 0.15464 (15) | 0.42656 (10) | 0.43354 (7) | 0.0266 (3) | |
O8 | 0.00365 (14) | 0.54097 (9) | 0.48132 (7) | 0.0230 (3) | |
O9 | 0.41651 (15) | 0.72871 (8) | 0.57326 (7) | 0.0203 (3) | |
H9O | 0.4679 | 0.7450 | 0.6094 | 0.030* | |
O10 | 0.72117 (14) | 0.67699 (10) | 0.52755 (7) | 0.0254 (3) | |
H10O | 0.7829 | 0.6932 | 0.4955 | 0.038* | |
C1 | 0.09359 (19) | 0.73702 (12) | 0.87676 (9) | 0.0181 (3) | |
H1 | 0.1045 | 0.6917 | 0.9171 | 0.022* | |
C2 | 0.20792 (19) | 0.71817 (12) | 0.81233 (9) | 0.0168 (3) | |
H2 | 0.2750 | 0.6653 | 0.8222 | 0.020* | |
C3 | 0.10501 (19) | 0.70371 (11) | 0.74457 (9) | 0.0174 (3) | |
H3 | 0.1510 | 0.7302 | 0.6994 | 0.021* | |
C4 | −0.03968 (19) | 0.75640 (11) | 0.76711 (9) | 0.0162 (3) | |
H4 | −0.0204 | 0.8227 | 0.7616 | 0.019* | |
C5 | −0.18473 (19) | 0.73217 (12) | 0.72500 (9) | 0.0179 (3) | |
H5A | −0.2013 | 0.6652 | 0.7265 | 0.022* | |
C6 | −0.32189 (19) | 0.78143 (12) | 0.75760 (10) | 0.0188 (3) | |
H6A | −0.3319 | 0.7670 | 0.8104 | 0.023* | |
H6B | −0.3098 | 0.8477 | 0.7524 | 0.023* | |
C7 | 0.2787 (2) | 0.85227 (12) | 0.87392 (10) | 0.0204 (4) | |
C8 | 0.4020 (2) | 0.82149 (14) | 0.92836 (11) | 0.0265 (4) | |
H8A | 0.3869 | 0.8516 | 0.9757 | 0.040* | |
H8B | 0.5009 | 0.8376 | 0.9088 | 0.040* | |
H8C | 0.3961 | 0.7558 | 0.9351 | 0.040* | |
C9 | 0.2824 (2) | 0.95448 (13) | 0.85718 (12) | 0.0284 (4) | |
H9A | 0.2020 | 0.9695 | 0.8226 | 0.043* | |
H9B | 0.3796 | 0.9704 | 0.8356 | 0.043* | |
H9C | 0.2679 | 0.9886 | 0.9027 | 0.043* | |
C10 | 0.21131 (19) | 0.44449 (12) | 0.50562 (10) | 0.0195 (3) | |
H10A | 0.2237 | 0.3868 | 0.5336 | 0.023* | |
C11 | 0.0902 (2) | 0.50586 (12) | 0.54282 (9) | 0.0189 (3) | |
H11A | 0.0274 | 0.4729 | 0.5796 | 0.023* | |
C12 | 0.18450 (19) | 0.58362 (12) | 0.57694 (9) | 0.0165 (3) | |
H12 | 0.1264 | 0.6414 | 0.5799 | 0.020* | |
C13 | 0.31752 (19) | 0.59043 (11) | 0.52161 (9) | 0.0161 (3) | |
H13 | 0.2827 | 0.6217 | 0.4760 | 0.019* | |
C14 | 0.46207 (19) | 0.63771 (11) | 0.55074 (9) | 0.0166 (3) | |
H14 | 0.5000 | 0.6040 | 0.5945 | 0.020* | |
C15 | 0.5868 (2) | 0.64160 (12) | 0.49218 (10) | 0.0203 (3) | |
H15A | 0.6063 | 0.5804 | 0.4723 | 0.024* | |
H15B | 0.5562 | 0.6816 | 0.4512 | 0.024* | |
C16 | 0.0177 (2) | 0.47929 (12) | 0.41967 (10) | 0.0207 (4) | |
C17 | −0.1173 (2) | 0.41418 (14) | 0.41582 (11) | 0.0288 (4) | |
H17A | −0.1226 | 0.3787 | 0.4611 | 0.043* | |
H17B | −0.1051 | 0.3734 | 0.3739 | 0.043* | |
H17C | −0.2100 | 0.4491 | 0.4100 | 0.043* | |
C18 | 0.0392 (3) | 0.53557 (16) | 0.34954 (12) | 0.0432 (6) | |
H18A | −0.0497 | 0.5734 | 0.3414 | 0.065* | |
H18B | 0.0531 | 0.4950 | 0.3076 | 0.065* | |
H18C | 0.1278 | 0.5743 | 0.3549 | 0.065* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0209 (2) | 0.01871 (19) | 0.02014 (19) | −0.00514 (17) | 0.00455 (17) | −0.00471 (16) |
S2 | 0.01921 (19) | 0.01991 (18) | 0.01661 (18) | 0.00203 (17) | 0.00090 (17) | −0.00052 (15) |
O1 | 0.0146 (6) | 0.0254 (6) | 0.0145 (5) | −0.0016 (5) | −0.0011 (4) | −0.0011 (5) |
O2 | 0.0169 (6) | 0.0228 (6) | 0.0266 (7) | −0.0005 (5) | −0.0004 (5) | −0.0102 (5) |
O3 | 0.0157 (6) | 0.0193 (6) | 0.0229 (6) | −0.0036 (5) | −0.0008 (5) | −0.0047 (5) |
O4 | 0.0241 (7) | 0.0420 (8) | 0.0130 (6) | −0.0132 (6) | −0.0020 (5) | 0.0002 (5) |
O5 | 0.0147 (6) | 0.0289 (7) | 0.0246 (6) | −0.0020 (5) | −0.0027 (5) | −0.0026 (5) |
O6 | 0.0168 (6) | 0.0146 (5) | 0.0276 (6) | −0.0005 (5) | 0.0041 (5) | −0.0045 (5) |
O7 | 0.0240 (7) | 0.0302 (7) | 0.0257 (7) | 0.0022 (6) | −0.0003 (5) | −0.0131 (6) |
O8 | 0.0238 (6) | 0.0235 (6) | 0.0219 (6) | 0.0034 (5) | −0.0048 (5) | −0.0076 (5) |
O9 | 0.0229 (6) | 0.0144 (5) | 0.0237 (6) | 0.0017 (5) | −0.0047 (5) | −0.0030 (5) |
O10 | 0.0185 (7) | 0.0374 (8) | 0.0202 (6) | −0.0108 (6) | 0.0027 (5) | −0.0039 (6) |
C1 | 0.0169 (8) | 0.0196 (8) | 0.0178 (7) | 0.0002 (6) | −0.0029 (6) | −0.0016 (6) |
C2 | 0.0140 (8) | 0.0170 (8) | 0.0196 (8) | −0.0006 (6) | −0.0017 (6) | −0.0019 (6) |
C3 | 0.0174 (8) | 0.0172 (8) | 0.0176 (8) | −0.0029 (6) | 0.0008 (6) | −0.0027 (6) |
C4 | 0.0171 (8) | 0.0179 (7) | 0.0136 (7) | −0.0022 (6) | −0.0009 (6) | −0.0006 (6) |
C5 | 0.0170 (8) | 0.0213 (8) | 0.0155 (7) | −0.0042 (6) | −0.0012 (6) | 0.0003 (6) |
C6 | 0.0177 (8) | 0.0194 (8) | 0.0193 (8) | −0.0012 (7) | −0.0051 (7) | −0.0008 (6) |
C7 | 0.0162 (8) | 0.0220 (9) | 0.0229 (8) | 0.0007 (7) | −0.0026 (7) | −0.0070 (7) |
C8 | 0.0200 (9) | 0.0303 (10) | 0.0290 (10) | 0.0039 (8) | −0.0069 (7) | −0.0084 (8) |
C9 | 0.0235 (9) | 0.0212 (8) | 0.0406 (11) | −0.0007 (8) | −0.0030 (8) | −0.0072 (8) |
C10 | 0.0209 (9) | 0.0158 (8) | 0.0219 (8) | −0.0023 (6) | 0.0004 (6) | −0.0028 (6) |
C11 | 0.0179 (8) | 0.0205 (8) | 0.0181 (8) | −0.0014 (7) | 0.0004 (7) | −0.0032 (6) |
C12 | 0.0176 (8) | 0.0166 (7) | 0.0155 (7) | 0.0021 (6) | −0.0003 (6) | −0.0014 (6) |
C13 | 0.0174 (8) | 0.0125 (7) | 0.0183 (8) | 0.0010 (6) | 0.0006 (6) | −0.0010 (6) |
C14 | 0.0173 (8) | 0.0151 (7) | 0.0173 (7) | −0.0002 (6) | −0.0016 (6) | 0.0009 (6) |
C15 | 0.0199 (9) | 0.0216 (8) | 0.0194 (8) | −0.0043 (7) | 0.0000 (7) | −0.0020 (7) |
C16 | 0.0272 (9) | 0.0192 (8) | 0.0156 (8) | −0.0010 (7) | −0.0001 (7) | −0.0014 (6) |
C17 | 0.0290 (10) | 0.0252 (9) | 0.0323 (10) | −0.0045 (8) | −0.0071 (8) | −0.0029 (8) |
C18 | 0.0697 (17) | 0.0351 (12) | 0.0247 (10) | −0.0063 (12) | 0.0037 (10) | 0.0069 (9) |
S1—C3 | 1.8373 (17) | C5—H5A | 0.9800 |
S1—S2 | 2.0335 (6) | C6—H6A | 0.9700 |
S2—C12 | 1.8386 (17) | C6—H6B | 0.9700 |
O1—C1 | 1.408 (2) | C7—C9 | 1.510 (3) |
O1—C4 | 1.4442 (19) | C7—C8 | 1.517 (2) |
O2—C1 | 1.425 (2) | C8—H8A | 0.9600 |
O2—C7 | 1.427 (2) | C8—H8B | 0.9600 |
O3—C2 | 1.432 (2) | C8—H8C | 0.9600 |
O3—C7 | 1.440 (2) | C9—H9A | 0.9600 |
O4—C5 | 1.423 (2) | C9—H9B | 0.9600 |
O4—H4O | 0.8200 | C9—H9C | 0.9600 |
O5—C6 | 1.430 (2) | C10—C11 | 1.533 (2) |
O5—H5O | 0.8200 | C10—H10A | 0.9800 |
O6—C10 | 1.421 (2) | C11—C12 | 1.522 (2) |
O6—C13 | 1.4446 (19) | C11—H11A | 0.9800 |
O7—C10 | 1.403 (2) | C12—C13 | 1.528 (2) |
O7—C16 | 1.440 (2) | C12—H12 | 0.9800 |
O8—C16 | 1.423 (2) | C13—C14 | 1.527 (2) |
O8—C11 | 1.426 (2) | C13—H13 | 0.9800 |
O9—C14 | 1.434 (2) | C14—C15 | 1.511 (2) |
O9—H9O | 0.8200 | C14—H14 | 0.9800 |
O10—C15 | 1.427 (2) | C15—H15A | 0.9700 |
O10—H10O | 0.8200 | C15—H15B | 0.9700 |
C1—C2 | 1.547 (2) | C16—C18 | 1.506 (3) |
C1—H1 | 0.9800 | C16—C17 | 1.510 (3) |
C2—C3 | 1.522 (2) | C17—H17A | 0.9600 |
C2—H2 | 0.9800 | C17—H17B | 0.9600 |
C3—C4 | 1.529 (2) | C17—H17C | 0.9600 |
C3—H3 | 0.9800 | C18—H18A | 0.9600 |
C4—C5 | 1.514 (2) | C18—H18B | 0.9600 |
C4—H4 | 0.9800 | C18—H18C | 0.9600 |
C5—C6 | 1.510 (2) | ||
C3—S1—S2 | 98.99 (6) | C7—C9—H9A | 109.5 |
C12—S2—S1 | 99.69 (6) | C7—C9—H9B | 109.5 |
C1—O1—C4 | 107.15 (12) | H9A—C9—H9B | 109.5 |
C1—O2—C7 | 109.10 (13) | C7—C9—H9C | 109.5 |
C2—O3—C7 | 107.43 (13) | H9A—C9—H9C | 109.5 |
C5—O4—H4O | 109.5 | H9B—C9—H9C | 109.5 |
C6—O5—H5O | 109.5 | O7—C10—O6 | 112.76 (14) |
C10—O6—C13 | 108.45 (12) | O7—C10—C11 | 105.18 (14) |
C10—O7—C16 | 110.64 (13) | O6—C10—C11 | 107.37 (13) |
C16—O8—C11 | 109.08 (13) | O7—C10—H10A | 110.5 |
C14—O9—H9O | 109.5 | O6—C10—H10A | 110.5 |
C15—O10—H10O | 109.5 | C11—C10—H10A | 110.5 |
O1—C1—O2 | 110.35 (13) | O8—C11—C12 | 109.33 (14) |
O1—C1—C2 | 107.32 (13) | O8—C11—C10 | 103.76 (13) |
O2—C1—C2 | 104.33 (13) | C12—C11—C10 | 103.25 (13) |
O1—C1—H1 | 111.5 | O8—C11—H11A | 113.2 |
O2—C1—H1 | 111.5 | C12—C11—H11A | 113.2 |
C2—C1—H1 | 111.5 | C10—C11—H11A | 113.2 |
O3—C2—C3 | 109.47 (13) | C11—C12—C13 | 101.52 (13) |
O3—C2—C1 | 104.45 (13) | C11—C12—S2 | 108.41 (12) |
C3—C2—C1 | 103.61 (13) | C13—C12—S2 | 110.74 (11) |
O3—C2—H2 | 112.9 | C11—C12—H12 | 111.9 |
C3—C2—H2 | 112.9 | C13—C12—H12 | 111.9 |
C1—C2—H2 | 112.9 | S2—C12—H12 | 111.9 |
C2—C3—C4 | 102.08 (13) | O6—C13—C14 | 109.48 (13) |
C2—C3—S1 | 109.50 (12) | O6—C13—C12 | 103.11 (13) |
C4—C3—S1 | 111.67 (11) | C14—C13—C12 | 115.88 (14) |
C2—C3—H3 | 111.1 | O6—C13—H13 | 109.4 |
C4—C3—H3 | 111.1 | C14—C13—H13 | 109.4 |
S1—C3—H3 | 111.1 | C12—C13—H13 | 109.4 |
O1—C4—C5 | 111.01 (13) | O9—C14—C15 | 111.09 (14) |
O1—C4—C3 | 103.07 (13) | O9—C14—C13 | 106.17 (13) |
C5—C4—C3 | 116.36 (13) | C15—C14—C13 | 112.10 (14) |
O1—C4—H4 | 108.7 | O9—C14—H14 | 109.1 |
C5—C4—H4 | 108.7 | C15—C14—H14 | 109.1 |
C3—C4—H4 | 108.7 | C13—C14—H14 | 109.1 |
O4—C5—C6 | 111.65 (14) | O10—C15—C14 | 107.40 (13) |
O4—C5—C4 | 104.38 (13) | O10—C15—H15A | 110.2 |
C6—C5—C4 | 111.21 (14) | C14—C15—H15A | 110.2 |
O4—C5—H5A | 109.8 | O10—C15—H15B | 110.2 |
C6—C5—H5A | 109.8 | C14—C15—H15B | 110.2 |
C4—C5—H5A | 109.8 | H15A—C15—H15B | 108.5 |
O5—C6—C5 | 107.91 (13) | O8—C16—O7 | 105.71 (13) |
O5—C6—H6A | 110.1 | O8—C16—C18 | 108.36 (15) |
C5—C6—H6A | 110.1 | O7—C16—C18 | 109.05 (17) |
O5—C6—H6B | 110.1 | O8—C16—C17 | 111.09 (15) |
C5—C6—H6B | 110.1 | O7—C16—C17 | 108.93 (15) |
H6A—C6—H6B | 108.4 | C18—C16—C17 | 113.40 (17) |
O2—C7—O3 | 104.00 (13) | C16—C17—H17A | 109.5 |
O2—C7—C9 | 109.33 (14) | C16—C17—H17B | 109.5 |
O3—C7—C9 | 108.17 (15) | H17A—C17—H17B | 109.5 |
O2—C7—C8 | 110.29 (15) | C16—C17—H17C | 109.5 |
O3—C7—C8 | 111.04 (14) | H17A—C17—H17C | 109.5 |
C9—C7—C8 | 113.56 (15) | H17B—C17—H17C | 109.5 |
C7—C8—H8A | 109.5 | C16—C18—H18A | 109.5 |
C7—C8—H8B | 109.5 | C16—C18—H18B | 109.5 |
H8A—C8—H8B | 109.5 | H18A—C18—H18B | 109.5 |
C7—C8—H8C | 109.5 | C16—C18—H18C | 109.5 |
H8A—C8—H8C | 109.5 | H18A—C18—H18C | 109.5 |
H8B—C8—H8C | 109.5 | H18B—C18—H18C | 109.5 |
C3—S1—S2—C12 | −81.01 (8) | C16—O7—C10—O6 | −110.42 (15) |
C4—O1—C1—O2 | 89.04 (15) | C16—O7—C10—C11 | 6.27 (18) |
C4—O1—C1—C2 | −24.05 (17) | C13—O6—C10—O7 | 101.54 (16) |
C7—O2—C1—O1 | −131.43 (14) | C13—O6—C10—C11 | −13.84 (17) |
C7—O2—C1—C2 | −16.44 (17) | C16—O8—C11—C12 | 133.98 (14) |
C7—O3—C2—C3 | 133.13 (14) | C16—O8—C11—C10 | 24.34 (17) |
C7—O3—C2—C1 | 22.72 (16) | O7—C10—C11—O8 | −18.43 (17) |
O1—C1—C2—O3 | 113.11 (14) | O6—C10—C11—O8 | 101.89 (15) |
O2—C1—C2—O3 | −3.99 (16) | O7—C10—C11—C12 | −132.51 (14) |
O1—C1—C2—C3 | −1.50 (17) | O6—C10—C11—C12 | −12.19 (17) |
O2—C1—C2—C3 | −118.60 (14) | O8—C11—C12—C13 | −78.46 (16) |
O3—C2—C3—C4 | −86.56 (15) | C10—C11—C12—C13 | 31.52 (16) |
C1—C2—C3—C4 | 24.41 (16) | O8—C11—C12—S2 | 164.88 (11) |
O3—C2—C3—S1 | 154.98 (11) | C10—C11—C12—S2 | −85.14 (13) |
C1—C2—C3—S1 | −94.05 (13) | S1—S2—C12—C11 | −84.82 (11) |
S2—S1—C3—C2 | −87.01 (11) | S1—S2—C12—C13 | 164.62 (10) |
S2—S1—C3—C4 | 160.68 (10) | C10—O6—C13—C14 | 158.11 (13) |
C1—O1—C4—C5 | 165.20 (13) | C10—O6—C13—C12 | 34.22 (16) |
C1—O1—C4—C3 | 39.93 (15) | C11—C12—C13—O6 | −40.33 (16) |
C2—C3—C4—O1 | −39.16 (15) | S2—C12—C13—O6 | 74.62 (14) |
S1—C3—C4—O1 | 77.74 (13) | C11—C12—C13—C14 | −159.90 (14) |
C2—C3—C4—C5 | −160.87 (14) | S2—C12—C13—C14 | −44.95 (17) |
S1—C3—C4—C5 | −43.97 (17) | O6—C13—C14—O9 | −174.31 (12) |
O1—C4—C5—O4 | 177.28 (13) | C12—C13—C14—O9 | −58.27 (18) |
C3—C4—C5—O4 | −65.29 (18) | O6—C13—C14—C15 | 64.22 (17) |
O1—C4—C5—C6 | 56.74 (18) | C12—C13—C14—C15 | −179.75 (14) |
C3—C4—C5—C6 | 174.17 (14) | O9—C14—C15—O10 | 67.98 (18) |
O4—C5—C6—O5 | 67.08 (17) | C13—C14—C15—O10 | −173.41 (14) |
C4—C5—C6—O5 | −176.77 (13) | C11—O8—C16—O7 | −20.99 (18) |
C1—O2—C7—O3 | 30.63 (17) | C11—O8—C16—C18 | −137.78 (17) |
C1—O2—C7—C9 | 145.97 (15) | C11—O8—C16—C17 | 97.02 (17) |
C1—O2—C7—C8 | −88.49 (17) | C10—O7—C16—O8 | 8.42 (18) |
C2—O3—C7—O2 | −33.02 (16) | C10—O7—C16—C18 | 124.73 (17) |
C2—O3—C7—C9 | −149.18 (14) | C10—O7—C16—C17 | −111.03 (16) |
C2—O3—C7—C8 | 85.58 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O10i | 0.82 | 1.94 | 2.7249 (18) | 159 |
O5—H5O···O3i | 0.82 | 1.99 | 2.8055 (18) | 176 |
O9—H9O···O5ii | 0.82 | 2.05 | 2.8338 (17) | 159 |
O10—H10O···O9iii | 0.82 | 2.04 | 2.8305 (18) | 163 |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z; (iii) x+1/2, −y+3/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C18H30O10S2 |
Mr | 470.54 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 8.7266 (1), 14.4778 (4), 17.8606 (5) |
V (Å3) | 2256.54 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.29 |
Crystal size (mm) | 0.4 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Nonius KappaCCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22012, 5134, 4969 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.066, 1.09 |
No. of reflections | 5134 |
No. of parameters | 279 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.21 |
Absolute structure | Flack (1983), 2211 Freidel pairs |
Absolute structure parameter | 0.02 (5) |
Computer programs: COLLECT (Nonius, 1997), DENZO and SCALEPACK (Otwinowski & Minor, 1997), DENZO and SCALEPACK, SHELXS97 (Sheldrick, 1997), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 1997) and PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4O···O10i | 0.82 | 1.94 | 2.7249 (18) | 158.9 |
O5—H5O···O3i | 0.82 | 1.99 | 2.8055 (18) | 176.0 |
O9—H9O···O5ii | 0.82 | 2.05 | 2.8338 (17) | 159.1 |
O10—H10O···O9iii | 0.82 | 2.04 | 2.8305 (18) | 162.9 |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z; (iii) x+1/2, −y+3/2, −z+1. |
The title compound, (I), was prepared as a part of a project aimed at the synthesis of potential gelators of organic solvents (Luboradzki et al., 2005). The class of saccharide-based gelators having free OH groups and the glucofuranose fragment are able to form gels with huge spectrum of organic solvents. According to the driving forces responsible for molecular aggregation they may be classified as hydrogen-bond-based gelators (Terech & Weiss 1997).
The crystal structure of (I) (Fig. 1) contains one independent molecule of the title compound per asymmetric unit. The molecules are bound into one dimensional hydrogen bond-based chains (generated by the screw axis along the a axis) utilizing all hydroxy H atoms (Fig. 2). Each molecule is involved in four hydrogen bonds as proton donor and in four as acceptor.