Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807034174/fb2056sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807034174/fb2056Isup2.hkl |
CCDC reference: 299591
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.003 Å
- R factor = 0.048
- wR factor = 0.107
- Data-to-parameter ratio = 12.0
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
Alert level G PLAT793_ALERT_1_G Check the Absolute Configuration of C3 = ... S
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The title compound was prepared by the reaction of isatin (1 mmol), malononitrile (1 mmol) and 4-hydroxycoumarin (1 mmol) in water (5 ml). The reaction was catalyzed by TEBA (triethylbenzylammonium chloride, 1 mmol). After stirring at 333 K for 2 h, the reaction mixture was cooled and washed with small amount of ethanol. The crude product was filtered and single crystals of the title compound were obtained from 95% aqueous ethanol solution by slow evaporation at room temperature (yield 80%; m.p. 563–564 K). Spectroscopic analysis: IR (KBr, n, cm-1): 3357, 3303, 3195, 2955, 2199, 1721, 1667, 1613, 1523, 1474, 1366, 1227, 1132, 1072, 972, 864, 748, 563 1H NMR (400 MHz, DMSO-d6): 7.95 (d, 1H, J = 8.0 Hz, ArH), 7.77 (t, 1H, J = 7.6 Hz, ArH), 7.67 (br s, 2H, NH2), 7.57 (t, 1H, J = 7.6 Hz, ArH), 7.50 (d, 1H, J = 8.4 Hz, ArH), 7.22 (t, 2H, J = 7.6 Hz, ArH), 6.93 (t, 1H, J = 7.6 Hz, ArH), 6.85 (d, 1H, J = 8.0 Hz, ArH).
Despite the fact that all the H atoms were discernible in the difference Fourier maps all the C-aryl H atoms were situated into the idealized positions and allowed to ride on their parent atoms, with C–H = 0.95 and Uiso(H) = 1.2Ueq(C). As to the H atoms attached to the N atoms their coordinates were freely refined since these atoms are involved in the hydrogen bonds
while Uiso(H) = 1.2Ueq(C) or 1.2 Ueq(N).
The indole nucleus is a well known heterocycle (da Silva et al., 2001). Compounds carrying the indole moiety exhibit antibacterial and fungicidal activities (Joshi & Chand, 1982). Spirooxindole ring systems are found in a number of alkaloids like horsifiline, spirotryprostatin and elacomine (Abdel-Rahman et al., 2004). As a part of our program devoted to the preparation of heterocyclic compounds involving indole derivatives (Wang et al., 2006), we have synthesized a series of spirooxindoles via reactions of substituted isatins together with malononitrile and 4-hydroxycoumarin in water. Herein we report the crystal structure of the title compound, (I) (Fig. 1).
In (I), the atoms of the pyran ring (C1/C2/C3/C4/C5/O1) are almost coplanar with the largest deviation of O1 being 0.067 (1) Å from the mean plane (Spek, 2003).
The angle between the pyran plane and the indole ring with a common spiro atom C3 is 88.23 (8)°.
The molecules are linked into a three-dimensional framework structure by the formation of the moderate N—H···O and N—H···N hydrogen bonds. The atom N3 donates a hydrogen H3B to the atom O4i [Symmetry code: (i) -x + 1/2, y + 1/2, -z + 1/2.] forming thus a graph set C(7) - (Fig. 2) (Bernstein et al., 1995). The adjacent chains are connected by the pairs of N1—H1···O2ii hydrogen bonds forming a sheet with a cyclic motif R22(14) (Fig. 3). [Symmetry code: (ii) -x + 1, -y, -z + 1.] The sheet is parallel to (001).
The sheets also interact via N3—H3A···N2iii with a graph set R22(12), forming thus a three-dimensional network structure. [Symmetry code: (iii) -x + 1/2, -y + 1/2, -z + 1.]
For general background, see: Abdel-Rahman et al. (2004); da Silva et al. (2001); Joshi & Chand, (1982); Wang & Ji (2006).
For related literature, see: Bernstein et al. (1995); Spek (2003).
Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2001); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
C20H11N3O4 | F(000) = 1472 |
Mr = 357.32 | Dx = 1.416 Mg m−3 |
Monoclinic, C2/c | Melting point = 563–564 K |
Hall symbol: -C 2yc | Mo Kα radiation, λ = 0.71073 Å |
a = 25.265 (4) Å | Cell parameters from 5284 reflections |
b = 11.0076 (12) Å | θ = 3.0–25.3° |
c = 14.864 (2) Å | µ = 0.10 mm−1 |
β = 125.820 (3)° | T = 173 K |
V = 3351.9 (8) Å3 | Block, colourless |
Z = 8 | 0.31 × 0.30 × 0.20 mm |
Rigaku Mercury diffractometer | 3068 independent reflections |
Radiation source: fine-focus sealed tube | 2674 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
Detector resolution: 7.31 pixels mm-1 | θmax = 25.4°, θmin = 3.0° |
ω scans | h = −30→30 |
Absorption correction: multi-scan (Jacobson, 1998) | k = −13→12 |
Tmin = 0.969, Tmax = 0.980 | l = −17→17 |
16029 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.107 | w = 1/[σ2(Fo2) + (0.0419P)2 + 2.3453P] where P = (Fo2 + 2Fc2)/3 |
S = 1.15 | (Δ/σ)max < 0.001 |
3068 reflections | Δρmax = 0.20 e Å−3 |
255 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
35 constraints | Extinction coefficient: 0.0011 (2) |
Primary atom site location: structure-invariant direct methods |
C20H11N3O4 | V = 3351.9 (8) Å3 |
Mr = 357.32 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 25.265 (4) Å | µ = 0.10 mm−1 |
b = 11.0076 (12) Å | T = 173 K |
c = 14.864 (2) Å | 0.31 × 0.30 × 0.20 mm |
β = 125.820 (3)° |
Rigaku Mercury diffractometer | 3068 independent reflections |
Absorption correction: multi-scan (Jacobson, 1998) | 2674 reflections with I > 2σ(I) |
Tmin = 0.969, Tmax = 0.980 | Rint = 0.035 |
16029 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | Δρmax = 0.20 e Å−3 |
3068 reflections | Δρmin = −0.22 e Å−3 |
255 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.27661 (6) | 0.34373 (11) | 0.22134 (10) | 0.0312 (3) | |
O2 | 0.48118 (6) | 0.16044 (12) | 0.36788 (11) | 0.0377 (4) | |
O3 | 0.42608 (6) | 0.24176 (13) | 0.20112 (11) | 0.0383 (3) | |
O4 | 0.37375 (6) | −0.00143 (12) | 0.37643 (11) | 0.0392 (4) | |
N1 | 0.46001 (7) | 0.07244 (14) | 0.54446 (12) | 0.0292 (4) | |
H1 | 0.4763 (9) | 0.0014 (19) | 0.5746 (17) | 0.035* | |
N2 | 0.31587 (8) | 0.17282 (17) | 0.55027 (14) | 0.0411 (4) | |
N3 | 0.21451 (7) | 0.32125 (16) | 0.28103 (14) | 0.0337 (4) | |
H3A | 0.2087 (10) | 0.3088 (19) | 0.3354 (19) | 0.040* | |
H3B | 0.1874 (10) | 0.369 (2) | 0.2224 (18) | 0.040* | |
C1 | 0.32893 (8) | 0.31103 (16) | 0.22205 (15) | 0.0274 (4) | |
C2 | 0.38132 (8) | 0.25213 (16) | 0.30683 (14) | 0.0267 (4) | |
C3 | 0.38915 (8) | 0.21902 (15) | 0.41237 (14) | 0.0254 (4) | |
C4 | 0.32491 (8) | 0.24481 (16) | 0.39560 (14) | 0.0267 (4) | |
C5 | 0.27354 (8) | 0.30078 (16) | 0.30509 (14) | 0.0275 (4) | |
C6 | 0.43259 (9) | 0.21535 (16) | 0.29663 (15) | 0.0302 (4) | |
C7 | 0.37258 (9) | 0.30335 (17) | 0.11484 (15) | 0.0331 (4) | |
C8 | 0.37033 (10) | 0.32238 (19) | 0.02064 (17) | 0.0407 (5) | |
H8 | 0.4044 | 0.2945 | 0.0165 | 0.049* | |
C9 | 0.31716 (11) | 0.38302 (19) | −0.06707 (17) | 0.0433 (5) | |
H9 | 0.3148 | 0.3971 | −0.1324 | 0.052* | |
C10 | 0.26699 (10) | 0.42402 (19) | −0.06187 (17) | 0.0423 (5) | |
H10 | 0.2308 | 0.4657 | −0.1233 | 0.051* | |
C11 | 0.26960 (9) | 0.40437 (18) | 0.03233 (15) | 0.0365 (5) | |
H11 | 0.2354 | 0.4326 | 0.0360 | 0.044* | |
C12 | 0.32293 (9) | 0.34260 (16) | 0.12260 (14) | 0.0301 (4) | |
C13 | 0.40581 (8) | 0.08170 (16) | 0.43953 (15) | 0.0281 (4) | |
C14 | 0.48718 (8) | 0.18667 (16) | 0.59080 (15) | 0.0287 (4) | |
C15 | 0.54420 (9) | 0.21274 (19) | 0.69336 (16) | 0.0370 (5) | |
H15 | 0.5713 | 0.1499 | 0.7432 | 0.044* | |
C16 | 0.56031 (10) | 0.3339 (2) | 0.72057 (17) | 0.0435 (5) | |
H16 | 0.5991 | 0.3547 | 0.7905 | 0.052* | |
C17 | 0.52090 (10) | 0.42502 (19) | 0.64776 (17) | 0.0428 (5) | |
H17 | 0.5328 | 0.5075 | 0.6687 | 0.051* | |
C18 | 0.46399 (9) | 0.39779 (17) | 0.54424 (16) | 0.0342 (4) | |
H18 | 0.4371 | 0.4605 | 0.4940 | 0.041* | |
C19 | 0.44769 (8) | 0.27733 (16) | 0.51654 (14) | 0.0258 (4) | |
C20 | 0.31907 (8) | 0.20584 (17) | 0.47984 (15) | 0.0299 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0286 (7) | 0.0382 (8) | 0.0272 (6) | 0.0093 (5) | 0.0166 (6) | 0.0074 (6) |
O2 | 0.0327 (7) | 0.0409 (8) | 0.0439 (8) | 0.0105 (6) | 0.0248 (7) | 0.0131 (6) |
O3 | 0.0372 (8) | 0.0490 (8) | 0.0364 (8) | 0.0095 (6) | 0.0259 (7) | 0.0107 (6) |
O4 | 0.0398 (8) | 0.0314 (7) | 0.0386 (8) | −0.0057 (6) | 0.0185 (7) | −0.0072 (6) |
N1 | 0.0286 (8) | 0.0256 (8) | 0.0289 (8) | 0.0044 (6) | 0.0142 (7) | 0.0056 (7) |
N2 | 0.0298 (9) | 0.0597 (12) | 0.0331 (9) | 0.0053 (8) | 0.0181 (8) | 0.0090 (8) |
N3 | 0.0268 (8) | 0.0467 (10) | 0.0262 (8) | 0.0111 (7) | 0.0147 (7) | 0.0074 (8) |
C1 | 0.0262 (9) | 0.0274 (9) | 0.0278 (9) | 0.0010 (7) | 0.0154 (8) | 0.0003 (8) |
C2 | 0.0267 (9) | 0.0258 (9) | 0.0268 (9) | −0.0001 (7) | 0.0152 (8) | 0.0011 (7) |
C3 | 0.0225 (9) | 0.0266 (9) | 0.0252 (9) | 0.0020 (7) | 0.0129 (7) | 0.0018 (7) |
C4 | 0.0242 (9) | 0.0303 (10) | 0.0241 (9) | 0.0023 (7) | 0.0133 (8) | 0.0011 (7) |
C5 | 0.0271 (9) | 0.0310 (10) | 0.0239 (9) | 0.0011 (7) | 0.0146 (8) | −0.0023 (7) |
C6 | 0.0310 (10) | 0.0296 (10) | 0.0330 (10) | 0.0011 (8) | 0.0203 (9) | 0.0032 (8) |
C7 | 0.0343 (10) | 0.0341 (10) | 0.0302 (10) | −0.0011 (8) | 0.0184 (8) | 0.0021 (8) |
C8 | 0.0469 (12) | 0.0455 (12) | 0.0393 (11) | −0.0030 (10) | 0.0306 (10) | 0.0017 (10) |
C9 | 0.0580 (13) | 0.0429 (12) | 0.0324 (11) | −0.0093 (10) | 0.0283 (10) | 0.0014 (9) |
C10 | 0.0499 (12) | 0.0372 (12) | 0.0320 (11) | −0.0015 (9) | 0.0196 (10) | 0.0082 (9) |
C11 | 0.0382 (11) | 0.0341 (11) | 0.0329 (10) | 0.0003 (8) | 0.0184 (9) | 0.0039 (9) |
C12 | 0.0334 (10) | 0.0292 (10) | 0.0265 (9) | −0.0015 (8) | 0.0169 (8) | 0.0022 (8) |
C13 | 0.0280 (9) | 0.0299 (10) | 0.0294 (9) | −0.0008 (8) | 0.0186 (8) | −0.0004 (8) |
C14 | 0.0244 (9) | 0.0333 (10) | 0.0287 (9) | 0.0023 (7) | 0.0156 (8) | 0.0012 (8) |
C15 | 0.0258 (10) | 0.0473 (12) | 0.0291 (10) | 0.0026 (8) | 0.0112 (8) | 0.0022 (9) |
C16 | 0.0314 (11) | 0.0545 (14) | 0.0329 (11) | −0.0094 (9) | 0.0122 (9) | −0.0074 (10) |
C17 | 0.0438 (12) | 0.0385 (12) | 0.0433 (12) | −0.0128 (9) | 0.0238 (10) | −0.0089 (10) |
C18 | 0.0352 (10) | 0.0308 (10) | 0.0367 (10) | −0.0016 (8) | 0.0210 (9) | 0.0005 (9) |
C19 | 0.0244 (9) | 0.0288 (9) | 0.0252 (9) | 0.0002 (7) | 0.0151 (8) | 0.0008 (7) |
C20 | 0.0197 (9) | 0.0376 (11) | 0.0281 (10) | 0.0023 (7) | 0.0116 (8) | 0.0016 (8) |
O1—C1 | 1.364 (2) | C4—C20 | 1.411 (3) |
O1—C5 | 1.375 (2) | C7—C8 | 1.384 (3) |
O2—C6 | 1.213 (2) | C7—C12 | 1.394 (3) |
O3—C6 | 1.361 (2) | C8—C9 | 1.378 (3) |
O3—C7 | 1.379 (2) | C8—H8 | 0.9500 |
O4—C13 | 1.218 (2) | C9—C10 | 1.390 (3) |
N1—C13 | 1.348 (2) | C9—H9 | 0.9500 |
N1—C14 | 1.405 (2) | C10—C11 | 1.380 (3) |
N1—H1 | 0.88 (2) | C10—H10 | 0.9500 |
N2—C20 | 1.155 (2) | C11—C12 | 1.401 (3) |
N3—C5 | 1.334 (2) | C11—H11 | 0.9500 |
N3—H3A | 0.91 (2) | C14—C15 | 1.382 (3) |
N3—H3B | 0.90 (2) | C14—C19 | 1.386 (2) |
C1—C2 | 1.345 (2) | C15—C16 | 1.384 (3) |
C1—C12 | 1.438 (2) | C15—H15 | 0.9500 |
C2—C6 | 1.447 (2) | C16—C17 | 1.381 (3) |
C2—C3 | 1.507 (2) | C16—H16 | 0.9500 |
C3—C4 | 1.518 (2) | C17—C18 | 1.391 (3) |
C3—C19 | 1.522 (2) | C17—H17 | 0.9500 |
C3—C13 | 1.558 (2) | C18—C19 | 1.378 (3) |
C4—C5 | 1.353 (2) | C18—H18 | 0.9500 |
C1—O1—C5 | 118.03 (13) | C8—C9—C10 | 121.36 (19) |
C6—O3—C7 | 121.95 (14) | C8—C9—H9 | 119.3 |
C13—N1—C14 | 111.93 (15) | C10—C9—H9 | 119.3 |
C13—N1—H1 | 120.9 (13) | C11—C10—C9 | 120.14 (19) |
C14—N1—H1 | 126.9 (13) | C11—C10—H10 | 119.9 |
C5—N3—H3A | 118.2 (13) | C9—C10—H10 | 119.9 |
C5—N3—H3B | 117.1 (13) | C10—C11—C12 | 119.74 (19) |
H3A—N3—H3B | 121.4 (19) | C10—C11—H11 | 120.1 |
C2—C1—O1 | 123.54 (16) | C12—C11—H11 | 120.1 |
C2—C1—C12 | 122.25 (16) | C7—C12—C11 | 118.61 (17) |
O1—C1—C12 | 114.19 (15) | C7—C12—C1 | 116.86 (16) |
C1—C2—C6 | 119.16 (16) | C11—C12—C1 | 124.45 (17) |
C1—C2—C3 | 123.35 (16) | O4—C13—N1 | 126.97 (17) |
C6—C2—C3 | 117.47 (15) | O4—C13—C3 | 124.92 (16) |
C2—C3—C4 | 107.92 (14) | N1—C13—C3 | 108.10 (15) |
C2—C3—C19 | 114.49 (14) | C15—C14—C19 | 121.91 (18) |
C4—C3—C19 | 113.41 (14) | C15—C14—N1 | 128.42 (17) |
C2—C3—C13 | 110.83 (14) | C19—C14—N1 | 109.67 (15) |
C4—C3—C13 | 108.96 (14) | C14—C15—C16 | 117.44 (18) |
C19—C3—C13 | 101.03 (13) | C14—C15—H15 | 121.3 |
C5—C4—C20 | 118.91 (16) | C16—C15—H15 | 121.3 |
C5—C4—C3 | 124.04 (16) | C17—C16—C15 | 121.13 (18) |
C20—C4—C3 | 117.04 (15) | C17—C16—H16 | 119.4 |
N3—C5—C4 | 127.95 (17) | C15—C16—H16 | 119.4 |
N3—C5—O1 | 110.22 (15) | C16—C17—C18 | 120.98 (19) |
C4—C5—O1 | 121.82 (15) | C16—C17—H17 | 119.5 |
O2—C6—O3 | 117.36 (16) | C18—C17—H17 | 119.5 |
O2—C6—C2 | 123.94 (17) | C19—C18—C17 | 118.20 (18) |
O3—C6—C2 | 118.69 (15) | C19—C18—H18 | 120.9 |
O3—C7—C8 | 116.93 (17) | C17—C18—H18 | 120.9 |
O3—C7—C12 | 121.00 (16) | C18—C19—C14 | 120.33 (17) |
C8—C7—C12 | 122.07 (18) | C18—C19—C3 | 130.72 (16) |
C9—C8—C7 | 118.07 (19) | C14—C19—C3 | 108.94 (15) |
C9—C8—H8 | 121.0 | N2—C20—C4 | 178.28 (19) |
C7—C8—H8 | 121.0 | ||
C5—O1—C1—C2 | −8.6 (2) | O3—C7—C12—C11 | −179.78 (17) |
C5—O1—C1—C12 | 170.11 (15) | C8—C7—C12—C11 | −0.7 (3) |
O1—C1—C2—C6 | 176.44 (16) | O3—C7—C12—C1 | −2.7 (3) |
C12—C1—C2—C6 | −2.1 (3) | C8—C7—C12—C1 | 176.34 (18) |
O1—C1—C2—C3 | −2.0 (3) | C10—C11—C12—C7 | 0.6 (3) |
C12—C1—C2—C3 | 179.40 (16) | C10—C11—C12—C1 | −176.26 (18) |
C1—C2—C3—C4 | 9.1 (2) | C2—C1—C12—C7 | 3.5 (3) |
C6—C2—C3—C4 | −169.42 (15) | O1—C1—C12—C7 | −175.24 (15) |
C1—C2—C3—C19 | −118.24 (19) | C2—C1—C12—C11 | −179.66 (18) |
C6—C2—C3—C19 | 63.3 (2) | O1—C1—C12—C11 | 1.6 (3) |
C1—C2—C3—C13 | 128.30 (18) | C14—N1—C13—O4 | 175.88 (18) |
C6—C2—C3—C13 | −50.2 (2) | C14—N1—C13—C3 | −5.80 (19) |
C2—C3—C4—C5 | −6.8 (2) | C2—C3—C13—O4 | −54.4 (2) |
C19—C3—C4—C5 | 121.10 (19) | C4—C3—C13—O4 | 64.2 (2) |
C13—C3—C4—C5 | −127.24 (18) | C19—C3—C13—O4 | −176.12 (17) |
C2—C3—C4—C20 | 172.28 (16) | C2—C3—C13—N1 | 127.26 (15) |
C19—C3—C4—C20 | −59.8 (2) | C4—C3—C13—N1 | −114.14 (15) |
C13—C3—C4—C20 | 51.9 (2) | C19—C3—C13—N1 | 5.52 (18) |
C20—C4—C5—N3 | −2.9 (3) | C13—N1—C14—C15 | −176.13 (18) |
C3—C4—C5—N3 | 176.17 (17) | C13—N1—C14—C19 | 3.6 (2) |
C20—C4—C5—O1 | 178.32 (16) | C19—C14—C15—C16 | 1.0 (3) |
C3—C4—C5—O1 | −2.6 (3) | N1—C14—C15—C16 | −179.36 (18) |
C1—O1—C5—N3 | −168.19 (15) | C14—C15—C16—C17 | −0.1 (3) |
C1—O1—C5—C4 | 10.8 (2) | C15—C16—C17—C18 | −0.6 (3) |
C7—O3—C6—O2 | 179.72 (16) | C16—C17—C18—C19 | 0.5 (3) |
C7—O3—C6—C2 | 0.7 (3) | C17—C18—C19—C14 | 0.3 (3) |
C1—C2—C6—O2 | −178.94 (18) | C17—C18—C19—C3 | 178.86 (18) |
C3—C2—C6—O2 | −0.4 (3) | C15—C14—C19—C18 | −1.1 (3) |
C1—C2—C6—O3 | 0.0 (3) | N1—C14—C19—C18 | 179.20 (16) |
C3—C2—C6—O3 | 178.58 (15) | C15—C14—C19—C3 | −179.91 (16) |
C6—O3—C7—C8 | −178.35 (17) | N1—C14—C19—C3 | 0.4 (2) |
C6—O3—C7—C12 | 0.8 (3) | C2—C3—C19—C18 | 58.7 (2) |
O3—C7—C8—C9 | 179.59 (17) | C4—C3—C19—C18 | −65.7 (2) |
C12—C7—C8—C9 | 0.5 (3) | C13—C3—C19—C18 | 177.87 (18) |
C7—C8—C9—C10 | −0.1 (3) | C2—C3—C19—C14 | −122.58 (16) |
C8—C9—C10—C11 | 0.0 (3) | C4—C3—C19—C14 | 112.97 (17) |
C9—C10—C11—C12 | −0.2 (3) | C13—C3—C19—C14 | −3.45 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O4i | 0.90 (2) | 1.98 (2) | 2.855 (2) | 164.2 (19) |
N1—H1···O2ii | 0.88 (2) | 2.00 (2) | 2.865 (2) | 172.2 (19) |
N3—H3A···N2iii | 0.91 (2) | 2.13 (2) | 3.022 (2) | 164.7 (18) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x+1, −y, −z+1; (iii) −x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C20H11N3O4 |
Mr | 357.32 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 173 |
a, b, c (Å) | 25.265 (4), 11.0076 (12), 14.864 (2) |
β (°) | 125.820 (3) |
V (Å3) | 3351.9 (8) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.31 × 0.30 × 0.20 |
Data collection | |
Diffractometer | Rigaku Mercury |
Absorption correction | Multi-scan (Jacobson, 1998) |
Tmin, Tmax | 0.969, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16029, 3068, 2674 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.107, 1.15 |
No. of reflections | 3068 |
No. of parameters | 255 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.22 |
Computer programs: CrystalClear (Molecular Structure Corporation & Rigaku, 2001), CrystalClear, CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEPII (Johnson, 1976), SHELXL97.
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O4i | 0.90 (2) | 1.98 (2) | 2.855 (2) | 164.2 (19) |
N1—H1···O2ii | 0.88 (2) | 2.00 (2) | 2.865 (2) | 172.2 (19) |
N3—H3A···N2iii | 0.91 (2) | 2.13 (2) | 3.022 (2) | 164.7 (18) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x+1, −y, −z+1; (iii) −x+1/2, −y+1/2, −z+1. |
The indole nucleus is a well known heterocycle (da Silva et al., 2001). Compounds carrying the indole moiety exhibit antibacterial and fungicidal activities (Joshi & Chand, 1982). Spirooxindole ring systems are found in a number of alkaloids like horsifiline, spirotryprostatin and elacomine (Abdel-Rahman et al., 2004). As a part of our program devoted to the preparation of heterocyclic compounds involving indole derivatives (Wang et al., 2006), we have synthesized a series of spirooxindoles via reactions of substituted isatins together with malononitrile and 4-hydroxycoumarin in water. Herein we report the crystal structure of the title compound, (I) (Fig. 1).
In (I), the atoms of the pyran ring (C1/C2/C3/C4/C5/O1) are almost coplanar with the largest deviation of O1 being 0.067 (1) Å from the mean plane (Spek, 2003).
The angle between the pyran plane and the indole ring with a common spiro atom C3 is 88.23 (8)°.
The molecules are linked into a three-dimensional framework structure by the formation of the moderate N—H···O and N—H···N hydrogen bonds. The atom N3 donates a hydrogen H3B to the atom O4i [Symmetry code: (i) -x + 1/2, y + 1/2, -z + 1/2.] forming thus a graph set C(7) - (Fig. 2) (Bernstein et al., 1995). The adjacent chains are connected by the pairs of N1—H1···O2ii hydrogen bonds forming a sheet with a cyclic motif R22(14) (Fig. 3). [Symmetry code: (ii) -x + 1, -y, -z + 1.] The sheet is parallel to (001).
The sheets also interact via N3—H3A···N2iii with a graph set R22(12), forming thus a three-dimensional network structure. [Symmetry code: (iii) -x + 1/2, -y + 1/2, -z + 1.]