Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807034198/fl2142sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807034198/fl2142Isup2.hkl |
CCDC reference: 657789
Key indicators
- Single-crystal X-ray study
- T = 150 K
- Mean (C-C)= 0.002 Å
- R factor = 0.036
- wR factor = 0.092
- Data-to-parameter ratio = 12.0
checkCIF/PLATON results
No syntax errors found No errors found in this datablock
1,10-phenanthroline-5,6-dione was prepared as previously reported. Urea was purchased from Aldrich and used as received. Toluene and glacial acetic acid were purchased from Fisher Scientific Company and used as received. 200 proof ethanol was purchased from AAPER alcohol and used without further purification.
Physical Measurements: Fluorescence measurements were obtained with a Spex Fluorolog 2:1:2 spectrophotometer. The crystals were placed between two glass slides and then lined up within the excitation chamber using a mount. The slit widths were maintained at 1.4 mm and the light intensity collected with a Hamamatsu R928 photomultiplier tube with a 900 V bias. Data was gathered at intervals of 0.1 nanometers and integrated for 0.1 s. The data was processed using the Origin 6.1 suite of software and massaged to give smoother spectra without loss of spectral features.
The title molecule was prepared and purified as previously reported. Crystals were obtained by refluxing the title molecule in glacial acetic acid and then allowing the solution to cool. Crystals suitable for X-Ray analysis formed on the bottom of the flask. Elemental Anyalysis: Anal. for C14H10N6O2.2H2O: %C, 50.90; %H, 4.24; %N, 25.45; Found. %C, 50.90; %H, 3.60; %N, 24.77.
All non-H atoms were refined using anisotropic displacement parameters. Hydrogen atoms on the solvate water molecule and urea N atoms were refined using isotropic displacement parameters. All other H atoms were included at idealized positions and not refined.
The title compound (Scheme 1) has been snythesized before and included in many different metal systems as a ligand. Crystal structures of some of the complexes have been reported. (Deshpande et al., 2006; Elemans et al., 1998; Elemans et al., 2002; Kurth et al., 2001). To date the structure of the unbound ligand has not been solved. According to the crystal structure (Figure 1), each molecule forms three hydrogen bonds; one with another molecule and two with two different water molecules. Each water molecule forms four hydrogen bonds; two to urea NH groups, one to a urea ketone and one to a bipyridine nitrogen atom. The bipyridine rings are twisted out of plane which causes the urea groups to also twist. The hydrogen bonds of interest occur between H12—O1, H3—O2s, and H10—O2s, Table 1; these three bonds form a ring that gives stability to the molecule in the packing arrangement.
Photophysical Processes: The emission spectra and excitation spectra were determined in the solid state. The excitation spectra shows one major transition at 375 nm and is assigned to a π→ π* transition within the bipyridine moiety. The emission spectra and excitation spectra have good overlap. The emission spectra reveals very nice vibrational structure. The three major peaks are located at 405, 426, and 453 nm. The vibrational band spacing was found to be 1300 cm-1.
Synthesis: Deshpande et al. (2006); Elemans et al. (1998); Elemans et al. (2002); Kurth et al. (2001).
For related literature, see: Farrugia (1997).
Data collection: SMART (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Bruker, 2006); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2006); software used to prepare material for publication: SHELXTL.
Fig. 1. View of (1) (50% probability displacement ellipsoids) H atoms have been added for clarity of hydrogen bonding (Farrugia, 1997). |
C14H10N6O2·H2O | F(000) = 1296 |
Mr = 312.30 | Dx = 1.502 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P2ybc | Cell parameters from 9312 reflections |
a = 18.5164 (18) Å | θ = 2.9–27.1° |
b = 12.3920 (12) Å | µ = 0.11 mm−1 |
c = 12.6929 (13) Å | T = 150 K |
β = 108.528 (5)° | Block, lusterous grey |
V = 2761.5 (5) Å3 | 0.49 × 0.30 × 0.25 mm |
Z = 8 |
Bruker SMART CCD area-detector diffractometer | 5422 independent reflections |
Radiation source: fine-focus sealed tube | 4600 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
φ and ω scans | θmax = 26.0°, θmin = 3.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −22→22 |
Tmin = 0.938, Tmax = 0.973 | k = −15→15 |
68322 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.092 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0397P)2 + 1.7397P] where P = (Fo2 + 2Fc2)/3 |
5422 reflections | (Δ/σ)max = 0.001 |
451 parameters | Δρmax = 0.51 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C14H10N6O2·H2O | V = 2761.5 (5) Å3 |
Mr = 312.30 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 18.5164 (18) Å | µ = 0.11 mm−1 |
b = 12.3920 (12) Å | T = 150 K |
c = 12.6929 (13) Å | 0.49 × 0.30 × 0.25 mm |
β = 108.528 (5)° |
Bruker SMART CCD area-detector diffractometer | 5422 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4600 reflections with I > 2σ(I) |
Tmin = 0.938, Tmax = 0.973 | Rint = 0.032 |
68322 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.092 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.51 e Å−3 |
5422 reflections | Δρmin = −0.27 e Å−3 |
451 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.57536 (9) | 0.51053 (14) | 0.23035 (13) | 0.0250 (3) | |
H1 | 0.6246 | 0.5105 | 0.2261 | 0.030* | |
C2 | 0.52109 (9) | 0.44802 (14) | 0.15553 (14) | 0.0269 (4) | |
H2 | 0.5337 | 0.4060 | 0.1032 | 0.032* | |
C3 | 0.44753 (9) | 0.44943 (13) | 0.16025 (13) | 0.0235 (3) | |
H3A | 0.4095 | 0.4093 | 0.1100 | 0.028* | |
C4 | 0.43105 (8) | 0.51152 (11) | 0.24095 (12) | 0.0169 (3) | |
C5 | 0.48988 (8) | 0.57012 (12) | 0.31489 (12) | 0.0165 (3) | |
C6 | 0.47687 (8) | 0.63485 (11) | 0.40588 (11) | 0.0168 (3) | |
C7 | 0.40602 (8) | 0.63639 (11) | 0.42213 (11) | 0.0163 (3) | |
C8 | 0.39791 (9) | 0.69468 (13) | 0.51159 (13) | 0.0233 (3) | |
H8 | 0.3512 | 0.6975 | 0.5245 | 0.028* | |
C9 | 0.46028 (9) | 0.74809 (13) | 0.58058 (13) | 0.0262 (4) | |
H9A | 0.4568 | 0.7866 | 0.6416 | 0.031* | |
C10 | 0.52840 (9) | 0.74329 (13) | 0.55719 (13) | 0.0244 (3) | |
H10A | 0.5702 | 0.7800 | 0.6039 | 0.029* | |
C11 | 0.34995 (8) | 0.51796 (11) | 0.24373 (11) | 0.0153 (3) | |
C12 | 0.33911 (8) | 0.57274 (11) | 0.34914 (11) | 0.0156 (3) | |
C13 | 0.30689 (8) | 0.39172 (12) | 0.34652 (12) | 0.0178 (3) | |
C14 | 0.25196 (8) | 0.64364 (12) | 0.18811 (12) | 0.0183 (3) | |
C15 | −0.10575 (9) | −0.01787 (15) | 0.16880 (14) | 0.0300 (4) | |
H15 | −0.1562 | −0.0171 | 0.1679 | 0.036* | |
C16 | −0.06494 (9) | −0.11252 (14) | 0.19842 (14) | 0.0291 (4) | |
H16 | −0.0884 | −0.1752 | 0.2115 | 0.035* | |
C17 | 0.01127 (9) | −0.11196 (13) | 0.20813 (13) | 0.0241 (3) | |
H17 | 0.0410 | −0.1732 | 0.2323 | 0.029* | |
C18 | 0.04323 (8) | −0.01847 (12) | 0.18134 (12) | 0.0182 (3) | |
C19 | −0.00374 (8) | 0.07056 (12) | 0.14324 (12) | 0.0194 (3) | |
C20 | 0.02424 (8) | 0.16725 (12) | 0.09892 (12) | 0.0191 (3) | |
C21 | 0.10197 (8) | 0.18120 (12) | 0.11607 (12) | 0.0176 (3) | |
C22 | 0.12512 (9) | 0.27078 (12) | 0.06906 (13) | 0.0226 (3) | |
H22 | 0.1764 | 0.2821 | 0.0785 | 0.027* | |
C23 | 0.07080 (9) | 0.34281 (13) | 0.00801 (14) | 0.0276 (4) | |
H23 | 0.0849 | 0.4038 | −0.0235 | 0.033* | |
C24 | −0.00518 (9) | 0.32203 (13) | −0.00505 (14) | 0.0274 (4) | |
H24 | −0.0416 | 0.3704 | −0.0464 | 0.033* | |
C25 | 0.12815 (8) | −0.01245 (11) | 0.19996 (12) | 0.0168 (3) | |
C26 | 0.15898 (8) | 0.10310 (12) | 0.18926 (12) | 0.0169 (3) | |
C27 | 0.21494 (8) | −0.02458 (12) | 0.10467 (12) | 0.0197 (3) | |
C28 | 0.20351 (8) | 0.05141 (12) | 0.37338 (12) | 0.0208 (3) | |
H3 | 0.3210 (10) | 0.3610 (15) | 0.2068 (15) | 0.024 (5)* | |
H4 | 0.3084 (11) | 0.4909 (16) | 0.4657 (17) | 0.034 (5)* | |
H5 | 0.2869 (11) | 0.5538 (15) | 0.0913 (17) | 0.029 (5)* | |
H9 | 0.1498 (11) | −0.1433 (17) | 0.1173 (16) | 0.033 (5)* | |
H12 | 0.2169 (10) | 0.1955 (16) | 0.3208 (15) | 0.030 (5)* | |
H1S | 0.1442 (12) | 0.7076 (18) | 0.3928 (17) | 0.042 (6)* | |
H2S | 0.1900 (13) | 0.7700 (18) | 0.475 (2) | 0.052 (7)* | |
H3S | 0.3089 (13) | 0.2631 (19) | 0.538 (2) | 0.052 (7)* | |
H4S | 0.3637 (13) | 0.3118 (18) | 0.6218 (18) | 0.047 (6)* | |
N1 | 0.56110 (7) | 0.57086 (11) | 0.30836 (10) | 0.0212 (3) | |
N2 | 0.53740 (7) | 0.68914 (10) | 0.47175 (10) | 0.0219 (3) | |
N3 | 0.31824 (7) | 0.41111 (10) | 0.24826 (11) | 0.0188 (3) | |
N4 | 0.32376 (7) | 0.48165 (10) | 0.40966 (10) | 0.0196 (3) | |
N5 | 0.30309 (7) | 0.58453 (10) | 0.15337 (10) | 0.0185 (3) | |
N6 | 0.27320 (7) | 0.64070 (11) | 0.30005 (10) | 0.0204 (3) | |
H6 | 0.2500 | 0.6755 | 0.3384 | 0.024* | |
N7 | −0.07688 (7) | 0.07247 (11) | 0.14138 (11) | 0.0254 (3) | |
N8 | −0.02873 (7) | 0.23627 (11) | 0.03853 (11) | 0.0256 (3) | |
N9 | 0.15350 (7) | −0.07390 (11) | 0.12206 (11) | 0.0203 (3) | |
N10 | 0.22032 (7) | 0.07727 (10) | 0.14546 (11) | 0.0200 (3) | |
H10 | 0.2561 | 0.1215 | 0.1454 | 0.024* | |
N11 | 0.17069 (7) | −0.03684 (10) | 0.31552 (10) | 0.0206 (3) | |
H11 | 0.1744 | −0.1005 | 0.3437 | 0.025* | |
N12 | 0.18480 (7) | 0.13935 (10) | 0.30379 (10) | 0.0202 (3) | |
O1 | 0.28503 (6) | 0.30545 (9) | 0.37483 (9) | 0.0255 (3) | |
O2 | 0.19669 (6) | 0.69224 (9) | 0.12627 (9) | 0.0242 (2) | |
O3 | 0.25792 (6) | −0.06517 (9) | 0.05968 (9) | 0.0267 (3) | |
O4 | 0.24213 (7) | 0.05573 (9) | 0.47204 (9) | 0.0297 (3) | |
O1S | 0.17949 (6) | 0.75357 (9) | 0.40465 (10) | 0.0208 (2) | |
O2S | 0.32338 (6) | 0.27096 (9) | 0.60645 (10) | 0.0197 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0189 (8) | 0.0316 (9) | 0.0270 (8) | 0.0013 (7) | 0.0110 (6) | −0.0040 (7) |
C2 | 0.0283 (8) | 0.0293 (9) | 0.0277 (8) | −0.0016 (7) | 0.0154 (7) | −0.0090 (7) |
C3 | 0.0241 (8) | 0.0244 (8) | 0.0235 (8) | −0.0058 (6) | 0.0095 (6) | −0.0075 (6) |
C4 | 0.0193 (7) | 0.0151 (7) | 0.0170 (7) | −0.0002 (6) | 0.0070 (6) | 0.0016 (6) |
C5 | 0.0168 (7) | 0.0162 (7) | 0.0163 (7) | 0.0010 (6) | 0.0048 (6) | 0.0028 (6) |
C6 | 0.0182 (7) | 0.0147 (7) | 0.0161 (7) | 0.0008 (6) | 0.0033 (6) | 0.0018 (6) |
C7 | 0.0181 (7) | 0.0150 (7) | 0.0149 (7) | 0.0002 (6) | 0.0040 (6) | 0.0011 (6) |
C8 | 0.0232 (8) | 0.0251 (8) | 0.0243 (8) | −0.0026 (6) | 0.0113 (6) | −0.0050 (6) |
C9 | 0.0293 (9) | 0.0277 (9) | 0.0216 (8) | −0.0017 (7) | 0.0081 (7) | −0.0100 (7) |
C10 | 0.0215 (8) | 0.0238 (8) | 0.0239 (8) | −0.0027 (6) | 0.0016 (6) | −0.0076 (6) |
C11 | 0.0169 (7) | 0.0148 (7) | 0.0137 (7) | −0.0023 (5) | 0.0041 (5) | −0.0017 (5) |
C12 | 0.0150 (7) | 0.0170 (7) | 0.0156 (7) | −0.0002 (6) | 0.0059 (6) | 0.0004 (6) |
C13 | 0.0131 (7) | 0.0207 (8) | 0.0176 (7) | −0.0014 (6) | 0.0020 (6) | 0.0020 (6) |
C14 | 0.0180 (7) | 0.0163 (7) | 0.0199 (7) | −0.0014 (6) | 0.0049 (6) | 0.0004 (6) |
C15 | 0.0176 (8) | 0.0381 (10) | 0.0353 (9) | −0.0022 (7) | 0.0098 (7) | 0.0106 (8) |
C16 | 0.0235 (8) | 0.0294 (9) | 0.0346 (9) | −0.0058 (7) | 0.0094 (7) | 0.0100 (7) |
C17 | 0.0226 (8) | 0.0224 (8) | 0.0264 (8) | −0.0003 (6) | 0.0065 (6) | 0.0060 (7) |
C18 | 0.0175 (7) | 0.0208 (7) | 0.0162 (7) | −0.0016 (6) | 0.0053 (6) | 0.0000 (6) |
C19 | 0.0170 (7) | 0.0233 (8) | 0.0174 (7) | −0.0013 (6) | 0.0050 (6) | 0.0014 (6) |
C20 | 0.0185 (7) | 0.0196 (7) | 0.0188 (7) | 0.0008 (6) | 0.0053 (6) | 0.0001 (6) |
C21 | 0.0193 (7) | 0.0169 (7) | 0.0168 (7) | 0.0000 (6) | 0.0059 (6) | −0.0011 (6) |
C22 | 0.0195 (7) | 0.0219 (8) | 0.0270 (8) | −0.0012 (6) | 0.0082 (6) | 0.0025 (6) |
C23 | 0.0282 (8) | 0.0228 (8) | 0.0330 (9) | 0.0016 (7) | 0.0116 (7) | 0.0088 (7) |
C24 | 0.0235 (8) | 0.0232 (8) | 0.0334 (9) | 0.0048 (7) | 0.0062 (7) | 0.0105 (7) |
C25 | 0.0181 (7) | 0.0147 (7) | 0.0168 (7) | 0.0002 (6) | 0.0044 (6) | 0.0009 (6) |
C26 | 0.0149 (7) | 0.0166 (7) | 0.0189 (7) | −0.0014 (6) | 0.0052 (6) | −0.0009 (6) |
C27 | 0.0191 (7) | 0.0208 (8) | 0.0188 (7) | 0.0006 (6) | 0.0055 (6) | 0.0011 (6) |
C28 | 0.0204 (7) | 0.0212 (8) | 0.0200 (8) | 0.0008 (6) | 0.0051 (6) | 0.0003 (6) |
N1 | 0.0167 (6) | 0.0243 (7) | 0.0227 (7) | 0.0004 (5) | 0.0063 (5) | −0.0017 (5) |
N2 | 0.0185 (6) | 0.0227 (7) | 0.0223 (7) | −0.0014 (5) | 0.0036 (5) | −0.0042 (5) |
N3 | 0.0219 (7) | 0.0158 (6) | 0.0195 (6) | −0.0040 (5) | 0.0078 (5) | −0.0043 (5) |
N4 | 0.0241 (7) | 0.0210 (7) | 0.0160 (6) | −0.0051 (5) | 0.0095 (5) | −0.0003 (5) |
N5 | 0.0199 (6) | 0.0215 (7) | 0.0129 (6) | 0.0017 (5) | 0.0037 (5) | −0.0004 (5) |
N6 | 0.0179 (6) | 0.0258 (7) | 0.0173 (6) | 0.0067 (5) | 0.0052 (5) | −0.0024 (5) |
N7 | 0.0172 (6) | 0.0297 (7) | 0.0294 (7) | 0.0008 (5) | 0.0077 (6) | 0.0072 (6) |
N8 | 0.0198 (7) | 0.0236 (7) | 0.0317 (7) | 0.0033 (5) | 0.0059 (6) | 0.0074 (6) |
N9 | 0.0220 (7) | 0.0166 (7) | 0.0250 (7) | −0.0026 (5) | 0.0113 (5) | −0.0040 (5) |
N10 | 0.0155 (6) | 0.0175 (6) | 0.0289 (7) | −0.0023 (5) | 0.0099 (5) | 0.0000 (5) |
N11 | 0.0224 (7) | 0.0166 (6) | 0.0194 (6) | −0.0005 (5) | 0.0019 (5) | 0.0039 (5) |
N12 | 0.0230 (7) | 0.0162 (6) | 0.0182 (6) | −0.0031 (5) | 0.0020 (5) | −0.0011 (5) |
O1 | 0.0283 (6) | 0.0230 (6) | 0.0234 (6) | −0.0104 (5) | 0.0056 (5) | 0.0023 (5) |
O2 | 0.0227 (6) | 0.0239 (6) | 0.0224 (6) | 0.0061 (5) | 0.0020 (5) | 0.0036 (5) |
O3 | 0.0278 (6) | 0.0256 (6) | 0.0324 (6) | 0.0000 (5) | 0.0178 (5) | −0.0029 (5) |
O4 | 0.0353 (7) | 0.0282 (6) | 0.0179 (6) | −0.0016 (5) | −0.0022 (5) | 0.0011 (5) |
O1S | 0.0223 (6) | 0.0195 (6) | 0.0216 (6) | −0.0005 (5) | 0.0086 (5) | 0.0013 (5) |
O2S | 0.0185 (6) | 0.0214 (6) | 0.0200 (6) | −0.0015 (4) | 0.0072 (4) | 0.0011 (4) |
C1—N1 | 1.332 (2) | C17—H17 | 0.9300 |
C1—C2 | 1.380 (2) | C18—C19 | 1.393 (2) |
C1—H1 | 0.9300 | C18—C25 | 1.516 (2) |
C2—C3 | 1.382 (2) | C19—N7 | 1.3471 (19) |
C2—H2 | 0.9300 | C19—C20 | 1.485 (2) |
C3—C4 | 1.390 (2) | C20—N8 | 1.3428 (19) |
C3—H3A | 0.9300 | C20—C21 | 1.396 (2) |
C4—C5 | 1.395 (2) | C21—C22 | 1.391 (2) |
C4—C11 | 1.515 (2) | C21—C26 | 1.513 (2) |
C5—N1 | 1.3474 (19) | C22—C23 | 1.383 (2) |
C5—C6 | 1.487 (2) | C22—H22 | 0.9300 |
C6—N2 | 1.3462 (19) | C23—C24 | 1.387 (2) |
C6—C7 | 1.391 (2) | C23—H23 | 0.9300 |
C7—C8 | 1.394 (2) | C24—N8 | 1.334 (2) |
C7—C12 | 1.5120 (19) | C24—H24 | 0.9300 |
C8—C9 | 1.377 (2) | C25—N9 | 1.4397 (19) |
C8—H8 | 0.9300 | C25—N11 | 1.4591 (18) |
C9—C10 | 1.386 (2) | C25—C26 | 1.563 (2) |
C9—H9A | 0.9300 | C26—N12 | 1.4498 (19) |
C10—N2 | 1.330 (2) | C26—N10 | 1.4500 (19) |
C10—H10A | 0.9300 | C27—O3 | 1.2253 (18) |
C11—N5 | 1.4548 (18) | C27—N10 | 1.356 (2) |
C11—N3 | 1.4569 (19) | C27—N9 | 1.370 (2) |
C11—C12 | 1.5691 (19) | C28—O4 | 1.2302 (18) |
C12—N4 | 1.4435 (19) | C28—N11 | 1.349 (2) |
C12—N6 | 1.4502 (18) | C28—N12 | 1.376 (2) |
C13—O1 | 1.2362 (18) | N3—H3 | 0.826 (19) |
C13—N4 | 1.350 (2) | N4—H4 | 0.85 (2) |
C13—N3 | 1.3506 (19) | N5—H5 | 0.84 (2) |
C14—O2 | 1.2312 (18) | N6—H6 | 0.8600 |
C14—N6 | 1.3490 (19) | N9—H9 | 0.86 (2) |
C14—N5 | 1.3756 (19) | N10—H10 | 0.8600 |
C15—N7 | 1.334 (2) | N11—H11 | 0.8600 |
C15—C16 | 1.381 (2) | N12—H12 | 0.90 (2) |
C15—H15 | 0.9300 | O1S—H1S | 0.84 (2) |
C16—C17 | 1.377 (2) | O1S—H2S | 0.87 (2) |
C16—H16 | 0.9300 | O2S—H3S | 0.83 (3) |
C17—C18 | 1.391 (2) | O2S—H4S | 0.87 (2) |
N1—C1—C2 | 123.60 (14) | N8—C20—C21 | 122.67 (14) |
N1—C1—H1 | 118.2 | N8—C20—C19 | 116.78 (13) |
C2—C1—H1 | 118.2 | C21—C20—C19 | 120.48 (13) |
C1—C2—C3 | 118.36 (14) | C22—C21—C20 | 118.35 (13) |
C1—C2—H2 | 120.8 | C22—C21—C26 | 121.59 (13) |
C3—C2—H2 | 120.8 | C20—C21—C26 | 119.99 (13) |
C2—C3—C4 | 119.27 (14) | C23—C22—C21 | 119.15 (14) |
C2—C3—H3A | 120.4 | C23—C22—H22 | 120.4 |
C4—C3—H3A | 120.4 | C21—C22—H22 | 120.4 |
C3—C4—C5 | 118.46 (13) | C22—C23—C24 | 118.45 (15) |
C3—C4—C11 | 119.83 (13) | C22—C23—H23 | 120.8 |
C5—C4—C11 | 121.66 (13) | C24—C23—H23 | 120.8 |
N1—C5—C4 | 122.18 (13) | N8—C24—C23 | 123.45 (15) |
N1—C5—C6 | 116.57 (12) | N8—C24—H24 | 118.3 |
C4—C5—C6 | 121.25 (13) | C23—C24—H24 | 118.3 |
N2—C6—C7 | 122.63 (13) | N9—C25—N11 | 113.03 (12) |
N2—C6—C5 | 116.33 (13) | N9—C25—C18 | 114.54 (12) |
C7—C6—C5 | 121.03 (13) | N11—C25—C18 | 110.39 (12) |
C6—C7—C8 | 118.60 (13) | N9—C25—C26 | 102.53 (11) |
C6—C7—C12 | 121.99 (13) | N11—C25—C26 | 100.47 (11) |
C8—C7—C12 | 119.35 (13) | C18—C25—C26 | 114.90 (12) |
C9—C8—C7 | 118.79 (14) | N12—C26—N10 | 113.83 (12) |
C9—C8—H8 | 120.6 | N12—C26—C21 | 111.15 (12) |
C7—C8—H8 | 120.6 | N10—C26—C21 | 112.60 (12) |
C8—C9—C10 | 118.66 (14) | N12—C26—C25 | 102.11 (11) |
C8—C9—H9A | 120.7 | N10—C26—C25 | 100.56 (11) |
C10—C9—H9A | 120.7 | C21—C26—C25 | 115.86 (11) |
N2—C10—C9 | 123.69 (14) | O3—C27—N10 | 125.48 (14) |
N2—C10—H10A | 118.2 | O3—C27—N9 | 125.99 (14) |
C9—C10—H10A | 118.2 | N10—C27—N9 | 108.53 (13) |
N5—C11—N3 | 113.56 (11) | O4—C28—N11 | 127.22 (14) |
N5—C11—C4 | 111.02 (11) | O4—C28—N12 | 124.43 (14) |
N3—C11—C4 | 111.58 (12) | N11—C28—N12 | 108.33 (12) |
N5—C11—C12 | 102.77 (11) | C1—N1—C5 | 118.09 (13) |
N3—C11—C12 | 101.37 (11) | C10—N2—C6 | 117.59 (13) |
C4—C11—C12 | 116.03 (11) | C13—N3—C11 | 112.40 (12) |
N4—C12—N6 | 113.68 (12) | C13—N3—H3 | 121.0 (12) |
N4—C12—C7 | 110.09 (11) | C11—N3—H3 | 123.4 (12) |
N6—C12—C7 | 111.97 (12) | C13—N4—C12 | 112.16 (12) |
N4—C12—C11 | 102.45 (11) | C13—N4—H4 | 122.0 (13) |
N6—C12—C11 | 101.72 (11) | C12—N4—H4 | 120.8 (13) |
C7—C12—C11 | 116.50 (11) | C14—N5—C11 | 110.37 (12) |
O1—C13—N4 | 125.22 (14) | C14—N5—H5 | 117.7 (13) |
O1—C13—N3 | 125.71 (14) | C11—N5—H5 | 115.4 (13) |
N4—C13—N3 | 109.07 (13) | C14—N6—C12 | 113.08 (12) |
O2—C14—N6 | 126.14 (14) | C14—N6—H6 | 123.5 |
O2—C14—N5 | 124.99 (14) | C12—N6—H6 | 123.5 |
N6—C14—N5 | 108.86 (12) | C15—N7—C19 | 117.70 (14) |
N7—C15—C16 | 123.63 (15) | C24—N8—C20 | 117.93 (13) |
N7—C15—H15 | 118.2 | C27—N9—C25 | 110.09 (12) |
C16—C15—H15 | 118.2 | C27—N9—H9 | 119.0 (13) |
C17—C16—C15 | 118.47 (15) | C25—N9—H9 | 122.6 (13) |
C17—C16—H16 | 120.8 | C27—N10—C26 | 112.37 (12) |
C15—C16—H16 | 120.8 | C27—N10—H10 | 123.8 |
C16—C17—C18 | 119.06 (15) | C26—N10—H10 | 123.8 |
C16—C17—H17 | 120.5 | C28—N11—C25 | 112.65 (12) |
C18—C17—H17 | 120.5 | C28—N11—H11 | 123.7 |
C17—C18—C19 | 118.50 (13) | C25—N11—H11 | 123.7 |
C17—C18—C25 | 120.24 (13) | C28—N12—C26 | 109.51 (12) |
C19—C18—C25 | 121.16 (13) | C28—N12—H12 | 116.7 (12) |
N7—C19—C18 | 122.23 (14) | C26—N12—H12 | 117.7 (12) |
N7—C19—C20 | 116.68 (13) | H1S—O1S—H2S | 104 (2) |
C18—C19—C20 | 121.06 (13) | H3S—O2S—H4S | 106 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N12—H12···O1 | 0.90 (2) | 1.835 (2) | 2.726 (2) | 172.5 (1) |
N3—H3···O2S | 0.826 (19) | 2.082 (2) | 2.907 (2) | 176.3 (1) |
N10—H10···O2S | 0.86 | 1.99 | 2.833 (2) | 166 |
Experimental details
Crystal data | |
Chemical formula | C14H10N6O2·H2O |
Mr | 312.30 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 18.5164 (18), 12.3920 (12), 12.6929 (13) |
β (°) | 108.528 (5) |
V (Å3) | 2761.5 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.49 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.938, 0.973 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 68322, 5422, 4600 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.092, 1.03 |
No. of reflections | 5422 |
No. of parameters | 451 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.51, −0.27 |
Computer programs: SMART (Bruker, 2006), SAINT (Bruker, 2006), SAINT, SHELXTL (Bruker, 2006), SHELXL97 (Sheldrick, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N12—H12···O1 | 0.90 (2) | 1.835 (2) | 2.726 (2) | 172.5 (1) |
N3—H3···O2S | 0.826 (19) | 2.082 (2) | 2.907 (2) | 176.3 (1) |
N10—H10···O2S | 0.86 | 1.99 | 2.833 (2) | 166 |
The title compound (Scheme 1) has been snythesized before and included in many different metal systems as a ligand. Crystal structures of some of the complexes have been reported. (Deshpande et al., 2006; Elemans et al., 1998; Elemans et al., 2002; Kurth et al., 2001). To date the structure of the unbound ligand has not been solved. According to the crystal structure (Figure 1), each molecule forms three hydrogen bonds; one with another molecule and two with two different water molecules. Each water molecule forms four hydrogen bonds; two to urea NH groups, one to a urea ketone and one to a bipyridine nitrogen atom. The bipyridine rings are twisted out of plane which causes the urea groups to also twist. The hydrogen bonds of interest occur between H12—O1, H3—O2s, and H10—O2s, Table 1; these three bonds form a ring that gives stability to the molecule in the packing arrangement.
Photophysical Processes: The emission spectra and excitation spectra were determined in the solid state. The excitation spectra shows one major transition at 375 nm and is assigned to a π→ π* transition within the bipyridine moiety. The emission spectra and excitation spectra have good overlap. The emission spectra reveals very nice vibrational structure. The three major peaks are located at 405, 426, and 453 nm. The vibrational band spacing was found to be 1300 cm-1.