Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680703317X/gw2017sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680703317X/gw2017Isup2.hkl |
CCDC reference: 657757
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.030
- wR factor = 0.071
- Data-to-parameter ratio = 20.0
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT063_ALERT_3_C Crystal Probably too Large for Beam Size ....... 0.61 mm
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.88 From the CIF: _reflns_number_total 2743 Count of symmetry unique reflns 1499 Completeness (_total/calc) 182.99% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1244 Fraction of Friedel pairs measured 0.830 Are heavy atom types Z>Si present yes PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The synthesis of the title compound was realised according to the literature method (Akhmedov et al., 1991) with some modifications as given in the reaction sequence. The crystals which is suitable for X-ray analysis was obtained by the crystallization from n-hexane (yield 72%; m.p. 326 K). IR (ν, cm-1): 1724 (C═O), 732 (–CH2—Cl), 3049–3024 (Aromatics), 2980–2864 (Aliphatics); 1H NMR (CDCl3, p.p.m.): δ 1.54 (s, 3H, CH3 on cyclobutane), 2.37 (m, 2H, –CH2– in cyclobutane), 2.62 (m, 2H, –CH2– in cyclobutane), 3.67 (q, j = 9.1 Hz, 1H, >CH–), 4.09 (s, 2H, –CH2–), 7.13–7.34 (m, 5H, aromatics); 13C NMR (CDCl6, p.p.m.): δ 47.02, 203.66, 37.51, 37.05, 38.83, 30.56, 151.03, 124.78, 128.58, 125.94.
H atoms were positioned geometrically and treated using a riding model, fixing the bond lengths at 0.93, 0.96, 0.97 and 0.98 Å for aromatic, methyl, methylene and methine H atoms, respectively. The displacement parameters of the H atoms were constrained to be Uiso(H)= 1.2Ueq(1.5Ueq for methyl) of the carrier atom. Refinement of the absolute structure parameter (Flack, 1983) yielded a value of -0.01 (5).
It has been shown that 3-substituted cyclobutane carboxylic acid deriatives have antidepressant activities and liquid crystal properties (Roger et al., 1977; Dehmlow & Schmidt, 1990;). Substituted α-haloketones, like title compound, are used for different purposes, especially in the synthesis of heterocyclic compounds (Gompper & Christmann, 1959; Çukurovalı et al., 2002). The extensive synthetic possibilies of this compound, due to the presence of active reaction sites, hold promise for the preparation of new heterocyclic chemicals. As a continuation of our investigations on the cyclobutane derivatives, a crystal structure determination of the title compound, (I), has been undertaken and the results are presented here.
In the crystal structure, the phenyl ring and chloroacetaldehyde group are in cis position with respect to the cyclobutane ring. Although close to being planar, the cyclobutane ring in (I) is more puckered than those in the literature [11.55 (3)°,Özdemir et al., 2004; 19.8 (3)°, Dinçer et al., 2004]. The C4/C3/C6 plane forms a dihedral angle of 26.81 (13)° with the C4/C5/C6 plane. However, the bond lengths and angles in the four-membered ring are normal (Allen et al., 1987). The C—Cl and C═O bond distances are 1.7692 (17) and 1.211 (2) Å, repectively, and these values are significantly shorter than those in the literature [1.807 (12) and 1.187 (16) Å, respectively; Demir et al., 2006].
In the crystal structure of (I), atom C1 in the molecule at (x, y, z) acts as hydrogen-bond donor to the O atom in the molecule at (-x + 1/2, y, z + 1/2), forming a C(4) (Bernstein et al., 1995) chain running parallel to the [001] direction and generated by the c-glide plane at x = 1/4 (Fig. 2). There are no other significant interactions in the crystal structure of (I).
For related literature, see: Akhmedov et al. (1991); Allen et al. (1987); Bernstein et al. (1995); Dehmlow & Schmidt (1990); Demir et al. (2006); Dinçer et al. (2004); Farrugia (1997); Flack (1983); Gompper & Christmann (1959); Roger et al. (1977); Özdemir et al. (2004); Çukurovalı et al. (2002).
Data collection: X-AREA (Stoe & Cie, 2002); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2003).
C13H15ClO | F(000) = 472 |
Mr = 222.70 | Dx = 1.267 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 6312 reflections |
a = 9.4980 (9) Å | θ = 2.5–28.0° |
b = 15.6393 (11) Å | µ = 0.30 mm−1 |
c = 7.8578 (7) Å | T = 100 K |
V = 1167.21 (17) Å3 | Prism, colorless |
Z = 4 | 0.61 × 0.40 × 0.22 mm |
Stoe IPDS II diffractometer | 2743 independent reflections |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 2435 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.035 |
Detector resolution: 6.67 pixels mm-1 | θmax = 27.9°, θmin = 2.5° |
ω scans | h = −12→10 |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −20→20 |
Tmin = 0.885, Tmax = 0.944 | l = −10→10 |
6736 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.030 | w = 1/[σ2(Fo2) + (0.038P)2 + 0.0689P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.071 | (Δ/σ)max = 0.001 |
S = 1.05 | Δρmax = 0.20 e Å−3 |
2743 reflections | Δρmin = −0.19 e Å−3 |
137 parameters | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.0052 (14) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1251 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.01 (5) |
C13H15ClO | V = 1167.21 (17) Å3 |
Mr = 222.70 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 9.4980 (9) Å | µ = 0.30 mm−1 |
b = 15.6393 (11) Å | T = 100 K |
c = 7.8578 (7) Å | 0.61 × 0.40 × 0.22 mm |
Stoe IPDS II diffractometer | 2743 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 2435 reflections with I > 2σ(I) |
Tmin = 0.885, Tmax = 0.944 | Rint = 0.035 |
6736 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.071 | Δρmax = 0.20 e Å−3 |
S = 1.05 | Δρmin = −0.19 e Å−3 |
2743 reflections | Absolute structure: Flack (1983), 1251 Friedel pairs |
137 parameters | Absolute structure parameter: −0.01 (5) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.41536 (4) | 0.37951 (2) | 0.10882 (5) | 0.03443 (11) | |
O1 | 0.27620 (14) | 0.54032 (7) | 0.00821 (18) | 0.0385 (3) | |
C1 | 0.43719 (18) | 0.47994 (10) | 0.2090 (2) | 0.0304 (3) | |
H1A | 0.4059 | 0.4754 | 0.3262 | 0.036* | |
H1B | 0.5366 | 0.4940 | 0.2106 | 0.036* | |
C2 | 0.35801 (15) | 0.55188 (9) | 0.1242 (2) | 0.0243 (3) | |
C3 | 0.39456 (16) | 0.63806 (9) | 0.19372 (19) | 0.0234 (3) | |
H3 | 0.4005 | 0.6363 | 0.3182 | 0.028* | |
C4 | 0.52987 (14) | 0.67903 (9) | 0.1165 (2) | 0.0253 (3) | |
H4A | 0.6116 | 0.6759 | 0.1903 | 0.030* | |
H4B | 0.5521 | 0.6591 | 0.0027 | 0.030* | |
C5 | 0.45381 (14) | 0.76651 (9) | 0.1207 (2) | 0.0228 (3) | |
C6 | 0.31190 (15) | 0.71696 (9) | 0.13509 (19) | 0.0227 (3) | |
H6A | 0.2485 | 0.7397 | 0.2207 | 0.027* | |
H6B | 0.2639 | 0.7093 | 0.0272 | 0.027* | |
C7 | 0.48815 (19) | 0.81500 (11) | 0.2856 (2) | 0.0278 (4) | |
H7A | 0.4785 | 0.7771 | 0.3810 | 0.042* | |
H7B | 0.4244 | 0.8622 | 0.2984 | 0.042* | |
H7C | 0.5830 | 0.8360 | 0.2806 | 0.042* | |
C8 | 0.46899 (18) | 0.82486 (10) | −0.03045 (19) | 0.0231 (3) | |
C9 | 0.58479 (18) | 0.82191 (11) | −0.1395 (2) | 0.0285 (3) | |
H9 | 0.6562 | 0.7825 | −0.1200 | 0.034* | |
C10 | 0.5941 (2) | 0.87746 (12) | −0.2769 (2) | 0.0346 (4) | |
H10 | 0.6713 | 0.8743 | −0.3494 | 0.041* | |
C11 | 0.4903 (2) | 0.93721 (11) | −0.3071 (2) | 0.0356 (4) | |
H11 | 0.4973 | 0.9743 | −0.3992 | 0.043* | |
C12 | 0.3753 (2) | 0.94139 (11) | −0.1987 (2) | 0.0330 (4) | |
H12 | 0.3051 | 0.9818 | −0.2175 | 0.040* | |
C13 | 0.36494 (19) | 0.88556 (10) | −0.06253 (19) | 0.0263 (3) | |
H13 | 0.2870 | 0.8886 | 0.0089 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0380 (2) | 0.02533 (17) | 0.0400 (2) | 0.00003 (15) | 0.0113 (2) | −0.0010 (2) |
O1 | 0.0412 (7) | 0.0304 (6) | 0.0439 (7) | −0.0022 (5) | −0.0176 (6) | −0.0011 (5) |
C1 | 0.0332 (8) | 0.0289 (8) | 0.0290 (7) | 0.0035 (7) | 0.0012 (7) | −0.0001 (7) |
C2 | 0.0226 (6) | 0.0268 (7) | 0.0234 (6) | −0.0009 (5) | 0.0016 (6) | 0.0011 (7) |
C3 | 0.0235 (7) | 0.0248 (8) | 0.0219 (7) | −0.0003 (6) | −0.0007 (6) | 0.0025 (6) |
C4 | 0.0211 (6) | 0.0280 (7) | 0.0269 (6) | 0.0002 (5) | 0.0015 (8) | 0.0038 (8) |
C5 | 0.0214 (6) | 0.0259 (7) | 0.0210 (6) | −0.0012 (5) | 0.0005 (7) | 0.0010 (7) |
C6 | 0.0215 (6) | 0.0258 (7) | 0.0208 (7) | 0.0004 (5) | −0.0001 (6) | 0.0006 (6) |
C7 | 0.0314 (9) | 0.0302 (9) | 0.0218 (7) | −0.0007 (7) | −0.0012 (7) | −0.0009 (6) |
C8 | 0.0240 (8) | 0.0239 (7) | 0.0213 (7) | −0.0054 (6) | −0.0012 (6) | −0.0032 (6) |
C9 | 0.0270 (8) | 0.0316 (8) | 0.0269 (7) | −0.0060 (7) | 0.0016 (6) | −0.0037 (7) |
C10 | 0.0377 (10) | 0.0407 (9) | 0.0253 (7) | −0.0155 (8) | 0.0036 (7) | −0.0003 (7) |
C11 | 0.0491 (11) | 0.0310 (9) | 0.0268 (8) | −0.0157 (8) | −0.0050 (8) | 0.0043 (7) |
C12 | 0.0428 (10) | 0.0271 (8) | 0.0290 (8) | −0.0048 (7) | −0.0109 (7) | 0.0009 (7) |
C13 | 0.0298 (8) | 0.0245 (8) | 0.0246 (7) | −0.0029 (6) | −0.0014 (6) | −0.0003 (6) |
Cl1—C1 | 1.7692 (17) | C6—H6B | 0.9700 |
O1—C2 | 1.211 (2) | C7—H7A | 0.9600 |
C1—C2 | 1.509 (2) | C7—H7B | 0.9600 |
C1—H1A | 0.9700 | C7—H7C | 0.9600 |
C1—H1B | 0.9700 | C8—C13 | 1.393 (2) |
C2—C3 | 1.495 (2) | C8—C9 | 1.395 (2) |
C3—C6 | 1.5334 (19) | C9—C10 | 1.388 (2) |
C3—C4 | 1.559 (2) | C9—H9 | 0.9300 |
C3—H3 | 0.9800 | C10—C11 | 1.379 (3) |
C4—C5 | 1.5475 (19) | C10—H10 | 0.9300 |
C4—H4A | 0.9700 | C11—C12 | 1.386 (3) |
C4—H4B | 0.9700 | C11—H11 | 0.9300 |
C5—C8 | 1.505 (2) | C12—C13 | 1.385 (2) |
C5—C7 | 1.536 (2) | C12—H12 | 0.9300 |
C5—C6 | 1.5589 (19) | C13—H13 | 0.9300 |
C6—H6A | 0.9700 | ||
C2—C1—Cl1 | 114.01 (12) | C5—C6—H6A | 113.8 |
C2—C1—H1A | 108.7 | C3—C6—H6B | 113.8 |
Cl1—C1—H1A | 108.7 | C5—C6—H6B | 113.8 |
C2—C1—H1B | 108.7 | H6A—C6—H6B | 111.1 |
Cl1—C1—H1B | 108.7 | C5—C7—H7A | 109.5 |
H1A—C1—H1B | 107.6 | C5—C7—H7B | 109.5 |
O1—C2—C3 | 123.96 (13) | H7A—C7—H7B | 109.5 |
O1—C2—C1 | 122.75 (14) | C5—C7—H7C | 109.5 |
C3—C2—C1 | 113.26 (14) | H7A—C7—H7C | 109.5 |
C2—C3—C6 | 119.78 (13) | H7B—C7—H7C | 109.5 |
C2—C3—C4 | 114.81 (13) | C13—C8—C9 | 118.07 (15) |
C6—C3—C4 | 88.53 (11) | C13—C8—C5 | 119.21 (14) |
C2—C3—H3 | 110.6 | C9—C8—C5 | 122.71 (15) |
C6—C3—H3 | 110.6 | C10—C9—C8 | 120.48 (17) |
C4—C3—H3 | 110.6 | C10—C9—H9 | 119.8 |
C5—C4—C3 | 88.29 (10) | C8—C9—H9 | 119.8 |
C5—C4—H4A | 113.9 | C11—C10—C9 | 120.80 (17) |
C3—C4—H4A | 113.9 | C11—C10—H10 | 119.6 |
C5—C4—H4B | 113.9 | C9—C10—H10 | 119.6 |
C3—C4—H4B | 113.9 | C10—C11—C12 | 119.31 (16) |
H4A—C4—H4B | 111.1 | C10—C11—H11 | 120.3 |
C8—C5—C7 | 110.25 (11) | C12—C11—H11 | 120.3 |
C8—C5—C4 | 118.32 (15) | C13—C12—C11 | 120.08 (18) |
C7—C5—C4 | 110.82 (14) | C13—C12—H12 | 120.0 |
C8—C5—C6 | 116.20 (13) | C11—C12—H12 | 120.0 |
C7—C5—C6 | 111.58 (13) | C12—C13—C8 | 121.26 (16) |
C4—C5—C6 | 88.04 (10) | C12—C13—H13 | 119.4 |
C3—C6—C5 | 88.80 (10) | C8—C13—H13 | 119.4 |
C3—C6—H6A | 113.8 | ||
Cl1—C1—C2—O1 | 6.8 (2) | C4—C5—C6—C3 | 19.01 (13) |
Cl1—C1—C2—C3 | −171.24 (11) | C7—C5—C8—C13 | −75.72 (17) |
O1—C2—C3—C6 | 8.6 (2) | C4—C5—C8—C13 | 155.30 (13) |
C1—C2—C3—C6 | −173.33 (13) | C6—C5—C8—C13 | 52.5 (2) |
O1—C2—C3—C4 | −94.80 (19) | C7—C5—C8—C9 | 103.18 (17) |
C1—C2—C3—C4 | 83.25 (17) | C4—C5—C8—C9 | −25.8 (2) |
C2—C3—C4—C5 | 141.38 (13) | C6—C5—C8—C9 | −128.62 (16) |
C6—C3—C4—C5 | 19.00 (12) | C13—C8—C9—C10 | −0.8 (2) |
C3—C4—C5—C8 | −137.59 (13) | C5—C8—C9—C10 | −179.69 (15) |
C3—C4—C5—C7 | 93.69 (14) | C8—C9—C10—C11 | 0.8 (3) |
C3—C4—C5—C6 | −18.69 (12) | C9—C10—C11—C12 | −0.1 (3) |
C2—C3—C6—C5 | −136.82 (14) | C10—C11—C12—C13 | −0.5 (3) |
C4—C3—C6—C5 | −18.86 (12) | C11—C12—C13—C8 | 0.5 (2) |
C8—C5—C6—C3 | 139.81 (13) | C9—C8—C13—C12 | 0.2 (2) |
C7—C5—C6—C3 | −92.64 (13) | C5—C8—C13—C12 | 179.10 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1A···O1i | 0.97 | 2.46 | 3.244 (2) | 137 |
Symmetry code: (i) −x+1/2, y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H15ClO |
Mr | 222.70 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 100 |
a, b, c (Å) | 9.4980 (9), 15.6393 (11), 7.8578 (7) |
V (Å3) | 1167.21 (17) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.30 |
Crystal size (mm) | 0.61 × 0.40 × 0.22 |
Data collection | |
Diffractometer | Stoe IPDS II |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.885, 0.944 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6736, 2743, 2435 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.071, 1.05 |
No. of reflections | 2743 |
No. of parameters | 137 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Absolute structure | Flack (1983), 1251 Friedel pairs |
Absolute structure parameter | −0.01 (5) |
Computer programs: X-AREA (Stoe & Cie, 2002), X-AREA, X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and PLATON (Spek, 2003).
Cl1—C1 | 1.7692 (17) | C3—C4 | 1.559 (2) |
O1—C2 | 1.211 (2) | C4—C5 | 1.5475 (19) |
C3—C6 | 1.5334 (19) | C5—C6 | 1.5589 (19) |
C2—C1—Cl1 | 114.01 (12) | C5—C4—C3 | 88.29 (10) |
O1—C2—C3 | 123.96 (13) | C4—C5—C6 | 88.04 (10) |
O1—C2—C1 | 122.75 (14) | C3—C6—C5 | 88.80 (10) |
C6—C3—C4 | 88.53 (11) | ||
Cl1—C1—C2—O1 | 6.8 (2) | Cl1—C1—C2—C3 | −171.24 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1A···O1i | 0.97 | 2.46 | 3.244 (2) | 137.4 |
Symmetry code: (i) −x+1/2, y, z+1/2. |
It has been shown that 3-substituted cyclobutane carboxylic acid deriatives have antidepressant activities and liquid crystal properties (Roger et al., 1977; Dehmlow & Schmidt, 1990;). Substituted α-haloketones, like title compound, are used for different purposes, especially in the synthesis of heterocyclic compounds (Gompper & Christmann, 1959; Çukurovalı et al., 2002). The extensive synthetic possibilies of this compound, due to the presence of active reaction sites, hold promise for the preparation of new heterocyclic chemicals. As a continuation of our investigations on the cyclobutane derivatives, a crystal structure determination of the title compound, (I), has been undertaken and the results are presented here.
In the crystal structure, the phenyl ring and chloroacetaldehyde group are in cis position with respect to the cyclobutane ring. Although close to being planar, the cyclobutane ring in (I) is more puckered than those in the literature [11.55 (3)°,Özdemir et al., 2004; 19.8 (3)°, Dinçer et al., 2004]. The C4/C3/C6 plane forms a dihedral angle of 26.81 (13)° with the C4/C5/C6 plane. However, the bond lengths and angles in the four-membered ring are normal (Allen et al., 1987). The C—Cl and C═O bond distances are 1.7692 (17) and 1.211 (2) Å, repectively, and these values are significantly shorter than those in the literature [1.807 (12) and 1.187 (16) Å, respectively; Demir et al., 2006].
In the crystal structure of (I), atom C1 in the molecule at (x, y, z) acts as hydrogen-bond donor to the O atom in the molecule at (-x + 1/2, y, z + 1/2), forming a C(4) (Bernstein et al., 1995) chain running parallel to the [001] direction and generated by the c-glide plane at x = 1/4 (Fig. 2). There are no other significant interactions in the crystal structure of (I).