Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807033764/pr2011sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807033764/pr2011Isup2.hkl |
CCDC reference: 657781
Key indicators
- Single-crystal X-ray study
- T = 300 K
- Mean (C-C) = 0.003 Å
- R factor = 0.047
- wR factor = 0.134
- Data-to-parameter ratio = 17.5
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT093_ALERT_1_A No su's on H-atoms, but refinement reported as . mixed
Alert level C PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.99 PLAT322_ALERT_2_C Check Hybridisation of S1 in Main Residue . ? PLAT322_ALERT_2_C Check Hybridisation of S3 in Main Residue . ?
Alert level G PLAT793_ALERT_1_G Check the Absolute Configuration of C7 = ... R
1 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
A solution of 1-(4-(4-chlorophenyl)-6-methyl-2-thioxo-1,2,3,4- tetrahydropyrimidin-5-yl)ethanone(2 mmol),2-chloro-5-chloromethyl-thiazole (4 mmol) and potassium carbonate powder (2 mmol) in anhydrous Dimethyl Formamide (10 ml)was stirred vigorously at room temperature until the reaction was complete (monitored by thin-layer chromatography), the solid filtered off and the filtrate concentrated under vacuum.The residue was purified by column chromatography on silica gel using (2:1 v/v) petroleum ether/ethyl acetate as the eluent, giving a green solid (yield 88%, m.p.412 - 414 K). A yellow crystal grown from dichloromethane and hexane (2:1 v/v) was selected for X-ray structure analysis.
The H atoms were placed in calculated positions, with C—H = 0.93–0.97 Å, and included in the final cycles of refinement using a riding-model approximation, with Uiso(H) = 1.2–1.5Ueq(carrier atom). A rotating group model was used for the methyl groups.
Biginelli reaction is one of the most powerful synthetic methodologies for the heterocyclic six-membered rings. 3,4-Dihydropyrimidin-2(1H)-ones (DHPMs) and their derivatives have attracted considerable interest due to their wide range of therapeutic and pharmacological properties, such as antiviral, antitumor, antibacterial and antiinflammatory properties.(Kappe,1993).
We report here the crystal structure of (I) (Fig. 1), which was synthesized by introducing thiazole rings into a Biginelli Dihydropyrimidine molecular framework. The crystal packing shows that the intermolecular C12—H12A···N3i [symmetry code (i) -x + 1,y + 1/2,-z + 3/2] hydrogen bonds link molecules into rows along the c axis,while weak, inversion related C18—H18B···O1ii [symmetry code (ii) x - 1,y,z] hydrogen bonds join parallel rows forming a network, Fig, 2, Table 1.
For general background, see: Kappe (1993).
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
C21H18Cl2N4OS3 | F(000) = 1048 |
Mr = 509.47 | Dx = 1.492 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5976 reflections |
a = 10.6123 (5) Å | θ = 2.4–27.5° |
b = 18.7414 (6) Å | µ = 0.59 mm−1 |
c = 12.4631 (9) Å | T = 300 K |
β = 113.820 (1)° | Block, yellow |
V = 2267.6 (2) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 4 |
Bruker SMART 1000 CCD area-detector diffractometer | 4937 independent reflections |
Radiation source: fine-focus sealed tube | 3980 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
φ and ω scans | θmax = 27.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2000 or Sheldrick, 2001) | h = −13→13 |
Tmin = 0.844, Tmax = 0.892 | k = −23→23 |
15492 measured reflections | l = −10→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0801P)2 + 0.0525P] where P = (Fo2 + 2Fc2)/3 |
4937 reflections | (Δ/σ)max = 0.001 |
282 parameters | Δρmax = 0.76 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C21H18Cl2N4OS3 | V = 2267.6 (2) Å3 |
Mr = 509.47 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.6123 (5) Å | µ = 0.59 mm−1 |
b = 18.7414 (6) Å | T = 300 K |
c = 12.4631 (9) Å | 0.30 × 0.20 × 0.20 mm |
β = 113.820 (1)° |
Bruker SMART 1000 CCD area-detector diffractometer | 4937 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000 or Sheldrick, 2001) | 3980 reflections with I > 2σ(I) |
Tmin = 0.844, Tmax = 0.892 | Rint = 0.043 |
15492 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.76 e Å−3 |
4937 reflections | Δρmin = −0.26 e Å−3 |
282 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.30256 (19) | 0.89461 (10) | 0.60611 (17) | 0.0352 (4) | |
C2 | 0.3048 (2) | 0.82610 (11) | 0.5661 (2) | 0.0465 (5) | |
H2 | 0.3766 | 0.7956 | 0.6091 | 0.056* | |
C3 | 0.2016 (3) | 0.80212 (13) | 0.4627 (2) | 0.0585 (6) | |
H3 | 0.2047 | 0.7559 | 0.4368 | 0.070* | |
C4 | 0.0950 (3) | 0.84651 (14) | 0.3985 (2) | 0.0559 (6) | |
H4 | 0.0253 | 0.8303 | 0.3295 | 0.067* | |
C5 | 0.0913 (2) | 0.91513 (13) | 0.4365 (2) | 0.0513 (5) | |
H5 | 0.0194 | 0.9454 | 0.3928 | 0.062* | |
C6 | 0.1943 (2) | 0.93915 (11) | 0.53947 (19) | 0.0436 (5) | |
H6 | 0.1912 | 0.9856 | 0.5645 | 0.052* | |
C7 | 0.41613 (19) | 0.92033 (10) | 0.71977 (17) | 0.0341 (4) | |
H7 | 0.4727 | 0.8789 | 0.7580 | 0.041* | |
C8 | 0.36497 (19) | 0.95276 (10) | 0.80526 (16) | 0.0330 (4) | |
C9 | 0.34482 (19) | 1.02505 (10) | 0.80124 (17) | 0.0346 (4) | |
C10 | 0.48273 (19) | 1.04236 (10) | 0.70042 (16) | 0.0351 (4) | |
C11 | 0.3459 (2) | 0.90123 (11) | 0.88574 (18) | 0.0396 (5) | |
C12 | 0.3194 (3) | 0.92329 (14) | 0.9906 (2) | 0.0549 (6) | |
H12A | 0.2251 | 0.9378 | 0.9656 | 0.082* | |
H12B | 0.3788 | 0.9624 | 1.0293 | 0.082* | |
H12C | 0.3375 | 0.8838 | 1.0438 | 0.082* | |
C13 | 0.2709 (3) | 1.06632 (12) | 0.8610 (2) | 0.0512 (6) | |
H13A | 0.2031 | 1.0363 | 0.8711 | 0.077* | |
H13B | 0.2263 | 1.1069 | 0.8140 | 0.077* | |
H13C | 0.3358 | 1.0822 | 0.9363 | 0.077* | |
C14 | 0.6133 (2) | 0.94307 (12) | 0.66158 (19) | 0.0425 (5) | |
H14A | 0.6286 | 0.9759 | 0.6078 | 0.051* | |
H14B | 0.5808 | 0.8984 | 0.6205 | 0.051* | |
C15 | 0.7465 (2) | 0.93043 (11) | 0.76409 (19) | 0.0429 (5) | |
C16 | 0.8646 (2) | 0.96685 (15) | 0.7921 (2) | 0.0635 (7) | |
H16 | 0.8723 | 1.0041 | 0.7458 | 0.076* | |
C17 | 0.9358 (2) | 0.89425 (14) | 0.9401 (2) | 0.0561 (6) | |
C18 | 0.4988 (2) | 1.18515 (11) | 0.6571 (2) | 0.0504 (6) | |
H18A | 0.4788 | 1.1865 | 0.7265 | 0.061* | |
H18B | 0.5626 | 1.2236 | 0.6635 | 0.061* | |
C19 | 0.3691 (2) | 1.19778 (10) | 0.5523 (2) | 0.0444 (5) | |
C20 | 0.3491 (3) | 1.24214 (12) | 0.4621 (2) | 0.0522 (6) | |
H20 | 0.4199 | 1.2709 | 0.4608 | 0.063* | |
C21 | 0.1427 (3) | 1.19993 (12) | 0.3961 (2) | 0.0510 (6) | |
Cl1 | 1.04156 (7) | 0.85525 (5) | 1.06951 (7) | 0.0834 (3) | |
Cl2 | −0.02682 (7) | 1.18481 (4) | 0.30615 (7) | 0.0712 (2) | |
N1 | 0.39481 (17) | 1.06949 (8) | 0.73819 (15) | 0.0377 (4) | |
N2 | 0.50686 (16) | 0.97250 (8) | 0.69595 (14) | 0.0356 (4) | |
N3 | 0.9741 (2) | 0.94605 (14) | 0.8934 (2) | 0.0749 (7) | |
N4 | 0.2201 (2) | 1.24354 (10) | 0.37161 (18) | 0.0582 (5) | |
O1 | 0.35742 (19) | 0.83736 (9) | 0.86936 (16) | 0.0620 (5) | |
S1 | 0.76960 (6) | 0.86607 (3) | 0.86811 (6) | 0.05590 (19) | |
S2 | 0.58141 (5) | 1.10075 (3) | 0.65412 (5) | 0.04610 (17) | |
S3 | 0.21580 (6) | 1.15434 (3) | 0.52678 (6) | 0.05366 (19) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0362 (10) | 0.0342 (10) | 0.0367 (11) | −0.0047 (7) | 0.0164 (8) | −0.0023 (8) |
C2 | 0.0535 (13) | 0.0363 (11) | 0.0498 (13) | 0.0007 (9) | 0.0211 (11) | −0.0046 (9) |
C3 | 0.0711 (16) | 0.0476 (13) | 0.0580 (16) | −0.0150 (12) | 0.0272 (13) | −0.0215 (12) |
C4 | 0.0561 (14) | 0.0641 (15) | 0.0430 (14) | −0.0151 (12) | 0.0153 (11) | −0.0146 (11) |
C5 | 0.0451 (12) | 0.0593 (14) | 0.0423 (13) | −0.0012 (10) | 0.0100 (10) | 0.0003 (11) |
C6 | 0.0421 (11) | 0.0376 (11) | 0.0459 (13) | 0.0001 (8) | 0.0122 (10) | −0.0056 (9) |
C7 | 0.0332 (9) | 0.0299 (9) | 0.0367 (10) | 0.0015 (7) | 0.0115 (8) | 0.0007 (8) |
C8 | 0.0303 (9) | 0.0353 (10) | 0.0306 (10) | −0.0006 (7) | 0.0094 (8) | −0.0009 (8) |
C9 | 0.0315 (9) | 0.0368 (10) | 0.0317 (10) | −0.0006 (7) | 0.0090 (8) | −0.0025 (8) |
C10 | 0.0330 (9) | 0.0386 (10) | 0.0284 (10) | −0.0053 (7) | 0.0069 (8) | 0.0019 (8) |
C11 | 0.0310 (10) | 0.0444 (12) | 0.0389 (11) | 0.0000 (8) | 0.0093 (8) | 0.0055 (9) |
C12 | 0.0532 (13) | 0.0699 (16) | 0.0433 (13) | 0.0006 (11) | 0.0213 (11) | 0.0117 (11) |
C13 | 0.0591 (14) | 0.0440 (12) | 0.0570 (15) | 0.0039 (10) | 0.0302 (12) | −0.0050 (10) |
C14 | 0.0415 (11) | 0.0483 (12) | 0.0407 (12) | −0.0017 (9) | 0.0198 (9) | −0.0052 (9) |
C15 | 0.0399 (11) | 0.0490 (12) | 0.0439 (12) | 0.0029 (9) | 0.0211 (10) | −0.0003 (9) |
C16 | 0.0407 (12) | 0.0721 (17) | 0.0715 (17) | −0.0041 (11) | 0.0160 (12) | 0.0236 (14) |
C17 | 0.0439 (12) | 0.0660 (16) | 0.0560 (15) | 0.0077 (11) | 0.0177 (11) | 0.0118 (12) |
C18 | 0.0590 (14) | 0.0349 (11) | 0.0551 (14) | −0.0140 (9) | 0.0206 (11) | −0.0030 (10) |
C19 | 0.0520 (12) | 0.0313 (10) | 0.0520 (13) | −0.0038 (8) | 0.0231 (10) | 0.0000 (9) |
C20 | 0.0624 (15) | 0.0351 (11) | 0.0632 (16) | −0.0009 (10) | 0.0296 (13) | 0.0074 (10) |
C21 | 0.0603 (14) | 0.0382 (11) | 0.0506 (14) | 0.0060 (10) | 0.0184 (11) | 0.0074 (10) |
Cl1 | 0.0588 (4) | 0.1075 (6) | 0.0750 (5) | 0.0151 (4) | 0.0177 (4) | 0.0418 (4) |
Cl2 | 0.0631 (4) | 0.0636 (4) | 0.0670 (4) | 0.0024 (3) | 0.0057 (3) | 0.0088 (3) |
N1 | 0.0402 (9) | 0.0326 (8) | 0.0374 (9) | 0.0000 (7) | 0.0126 (7) | 0.0006 (7) |
N2 | 0.0346 (9) | 0.0352 (8) | 0.0381 (9) | −0.0030 (6) | 0.0158 (7) | −0.0025 (7) |
N3 | 0.0450 (12) | 0.0864 (17) | 0.0816 (17) | −0.0085 (11) | 0.0135 (12) | 0.0285 (14) |
N4 | 0.0705 (14) | 0.0437 (11) | 0.0603 (14) | 0.0076 (10) | 0.0264 (11) | 0.0142 (9) |
O1 | 0.0827 (12) | 0.0392 (9) | 0.0756 (13) | 0.0039 (8) | 0.0438 (10) | 0.0130 (8) |
S1 | 0.0509 (3) | 0.0574 (4) | 0.0604 (4) | −0.0046 (3) | 0.0236 (3) | 0.0117 (3) |
S2 | 0.0416 (3) | 0.0460 (3) | 0.0490 (3) | −0.0067 (2) | 0.0164 (2) | 0.0080 (2) |
S3 | 0.0523 (3) | 0.0485 (3) | 0.0548 (4) | −0.0068 (2) | 0.0160 (3) | 0.0128 (3) |
C1—C2 | 1.381 (3) | C12—H12C | 0.9600 |
C1—C6 | 1.391 (3) | C13—H13A | 0.9600 |
C1—C7 | 1.521 (3) | C13—H13B | 0.9600 |
C2—C3 | 1.387 (3) | C13—H13C | 0.9600 |
C2—H2 | 0.9300 | C14—N2 | 1.468 (3) |
C3—C4 | 1.372 (4) | C14—C15 | 1.492 (3) |
C3—H3 | 0.9300 | C14—H14A | 0.9700 |
C4—C5 | 1.376 (3) | C14—H14B | 0.9700 |
C4—H4 | 0.9300 | C15—C16 | 1.344 (3) |
C5—C6 | 1.382 (3) | C15—S1 | 1.714 (2) |
C5—H5 | 0.9300 | C16—N3 | 1.382 (3) |
C6—H6 | 0.9300 | C16—H16 | 0.9300 |
C7—N2 | 1.484 (2) | C17—N3 | 1.280 (3) |
C7—C8 | 1.506 (3) | C17—S1 | 1.708 (3) |
C7—H7 | 0.9800 | C17—Cl1 | 1.712 (3) |
C8—C9 | 1.369 (3) | C18—C19 | 1.485 (3) |
C8—C11 | 1.464 (3) | C18—S2 | 1.816 (2) |
C9—N1 | 1.389 (2) | C18—H18A | 0.9700 |
C9—C13 | 1.497 (3) | C18—H18B | 0.9700 |
C10—N1 | 1.306 (3) | C19—C20 | 1.344 (3) |
C10—N2 | 1.340 (3) | C19—S3 | 1.730 (2) |
C10—S2 | 1.7649 (19) | C20—N4 | 1.378 (3) |
C11—O1 | 1.229 (3) | C20—H20 | 0.9300 |
C11—C12 | 1.501 (3) | C21—N4 | 1.280 (3) |
C12—H12A | 0.9600 | C21—Cl2 | 1.716 (3) |
C12—H12B | 0.9600 | C21—S3 | 1.722 (2) |
C2—C1—C6 | 118.21 (19) | H13A—C13—H13B | 109.5 |
C2—C1—C7 | 120.55 (18) | C9—C13—H13C | 109.5 |
C6—C1—C7 | 121.24 (17) | H13A—C13—H13C | 109.5 |
C1—C2—C3 | 121.0 (2) | H13B—C13—H13C | 109.5 |
C1—C2—H2 | 119.5 | N2—C14—C15 | 112.58 (17) |
C3—C2—H2 | 119.5 | N2—C14—H14A | 109.1 |
C4—C3—C2 | 120.1 (2) | C15—C14—H14A | 109.1 |
C4—C3—H3 | 120.0 | N2—C14—H14B | 109.1 |
C2—C3—H3 | 120.0 | C15—C14—H14B | 109.1 |
C3—C4—C5 | 119.8 (2) | H14A—C14—H14B | 107.8 |
C3—C4—H4 | 120.1 | C16—C15—C14 | 127.1 (2) |
C5—C4—H4 | 120.1 | C16—C15—S1 | 109.09 (18) |
C4—C5—C6 | 120.1 (2) | C14—C15—S1 | 123.79 (16) |
C4—C5—H5 | 119.9 | C15—C16—N3 | 116.5 (2) |
C6—C5—H5 | 119.9 | C15—C16—H16 | 121.8 |
C5—C6—C1 | 120.8 (2) | N3—C16—H16 | 121.8 |
C5—C6—H6 | 119.6 | N3—C17—S1 | 116.4 (2) |
C1—C6—H6 | 119.6 | N3—C17—Cl1 | 123.0 (2) |
N2—C7—C8 | 108.91 (15) | S1—C17—Cl1 | 120.53 (15) |
N2—C7—C1 | 110.90 (15) | C19—C18—S2 | 113.85 (16) |
C8—C7—C1 | 114.23 (15) | C19—C18—H18A | 108.8 |
N2—C7—H7 | 107.5 | S2—C18—H18A | 108.8 |
C8—C7—H7 | 107.5 | C19—C18—H18B | 108.8 |
C1—C7—H7 | 107.5 | S2—C18—H18B | 108.8 |
C9—C8—C11 | 127.94 (18) | H18A—C18—H18B | 107.7 |
C9—C8—C7 | 117.97 (17) | C20—C19—C18 | 127.7 (2) |
C11—C8—C7 | 114.07 (16) | C20—C19—S3 | 108.54 (18) |
C8—C9—N1 | 121.62 (17) | C18—C19—S3 | 123.73 (16) |
C8—C9—C13 | 126.75 (19) | C19—C20—N4 | 117.7 (2) |
N1—C9—C13 | 111.63 (17) | C19—C20—H20 | 121.1 |
N1—C10—N2 | 124.88 (17) | N4—C20—H20 | 121.1 |
N1—C10—S2 | 118.76 (15) | N4—C21—Cl2 | 123.68 (19) |
N2—C10—S2 | 116.34 (15) | N4—C21—S3 | 117.07 (19) |
O1—C11—C8 | 118.55 (19) | Cl2—C21—S3 | 119.25 (14) |
O1—C11—C12 | 118.6 (2) | C10—N1—C9 | 117.53 (16) |
C8—C11—C12 | 122.74 (19) | C10—N2—C14 | 124.19 (17) |
C11—C12—H12A | 109.5 | C10—N2—C7 | 119.04 (15) |
C11—C12—H12B | 109.5 | C14—N2—C7 | 116.66 (16) |
H12A—C12—H12B | 109.5 | C17—N3—C16 | 109.0 (2) |
C11—C12—H12C | 109.5 | C21—N4—C20 | 108.3 (2) |
H12A—C12—H12C | 109.5 | C17—S1—C15 | 88.97 (11) |
H12B—C12—H12C | 109.5 | C10—S2—C18 | 100.26 (10) |
C9—C13—H13A | 109.5 | C21—S3—C19 | 88.34 (12) |
C9—C13—H13B | 109.5 | ||
C6—C1—C2—C3 | −0.4 (3) | N2—C10—N1—C9 | 14.7 (3) |
C7—C1—C2—C3 | 179.9 (2) | S2—C10—N1—C9 | −163.91 (14) |
C1—C2—C3—C4 | −0.1 (4) | C8—C9—N1—C10 | −12.2 (3) |
C2—C3—C4—C5 | 0.6 (4) | C13—C9—N1—C10 | 167.42 (18) |
C3—C4—C5—C6 | −0.4 (4) | N1—C10—N2—C14 | −175.22 (18) |
C4—C5—C6—C1 | −0.1 (4) | S2—C10—N2—C14 | 3.4 (2) |
C2—C1—C6—C5 | 0.5 (3) | N1—C10—N2—C7 | 8.7 (3) |
C7—C1—C6—C5 | −179.7 (2) | S2—C10—N2—C7 | −172.67 (13) |
C2—C1—C7—N2 | 108.2 (2) | C15—C14—N2—C10 | 92.6 (2) |
C6—C1—C7—N2 | −71.5 (2) | C15—C14—N2—C7 | −91.3 (2) |
C2—C1—C7—C8 | −128.2 (2) | C8—C7—N2—C10 | −30.7 (2) |
C6—C1—C7—C8 | 52.1 (2) | C1—C7—N2—C10 | 95.8 (2) |
N2—C7—C8—C9 | 32.2 (2) | C8—C7—N2—C14 | 152.93 (16) |
C1—C7—C8—C9 | −92.4 (2) | C1—C7—N2—C14 | −80.5 (2) |
N2—C7—C8—C11 | −146.46 (16) | S1—C17—N3—C16 | 0.4 (3) |
C1—C7—C8—C11 | 88.9 (2) | Cl1—C17—N3—C16 | −178.2 (2) |
C11—C8—C9—N1 | 165.72 (18) | C15—C16—N3—C17 | −0.2 (4) |
C7—C8—C9—N1 | −12.7 (3) | Cl2—C21—N4—C20 | −179.69 (18) |
C11—C8—C9—C13 | −13.8 (3) | S3—C21—N4—C20 | 0.0 (3) |
C7—C8—C9—C13 | 167.71 (19) | C19—C20—N4—C21 | 0.8 (3) |
C9—C8—C11—O1 | 173.7 (2) | N3—C17—S1—C15 | −0.4 (2) |
C7—C8—C11—O1 | −7.8 (3) | Cl1—C17—S1—C15 | 178.23 (18) |
C9—C8—C11—C12 | −9.3 (3) | C16—C15—S1—C17 | 0.2 (2) |
C7—C8—C11—C12 | 169.16 (18) | C14—C15—S1—C17 | −178.51 (19) |
N2—C14—C15—C16 | −109.7 (3) | N1—C10—S2—C18 | −8.43 (18) |
N2—C14—C15—S1 | 68.8 (2) | N2—C10—S2—C18 | 172.88 (16) |
C14—C15—C16—N3 | 178.6 (2) | C19—C18—S2—C10 | −80.61 (18) |
S1—C15—C16—N3 | −0.1 (3) | N4—C21—S3—C19 | −0.6 (2) |
S2—C18—C19—C20 | −105.1 (2) | Cl2—C21—S3—C19 | 179.16 (15) |
S2—C18—C19—S3 | 73.8 (2) | C20—C19—S3—C21 | 0.92 (18) |
C18—C19—C20—N4 | 177.9 (2) | C18—C19—S3—C21 | −178.2 (2) |
S3—C19—C20—N4 | −1.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C18—H18A···N1 | 0.97 | 2.39 | 2.799 (3) | 105 |
C14—H14A···S2 | 0.97 | 2.51 | 2.972 (2) | 109 |
C7—H7···O1 | 0.98 | 2.32 | 2.687 (3) | 101 |
C18—H18B···O1i | 0.97 | 2.39 | 3.314 (3) | 159 |
C12—H12A···N3ii | 0.96 | 2.45 | 3.390 (3) | 167 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C21H18Cl2N4OS3 |
Mr | 509.47 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 300 |
a, b, c (Å) | 10.6123 (5), 18.7414 (6), 12.4631 (9) |
β (°) | 113.820 (1) |
V (Å3) | 2267.6 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.59 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2000 or Sheldrick, 2001) |
Tmin, Tmax | 0.844, 0.892 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15492, 4937, 3980 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.134, 1.07 |
No. of reflections | 4937 |
No. of parameters | 282 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.76, −0.26 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
C18—H18A···N1 | 0.97 | 2.39 | 2.799 (3) | 104.5 |
C14—H14A···S2 | 0.97 | 2.51 | 2.972 (2) | 109.1 |
C7—H7···O1 | 0.98 | 2.32 | 2.687 (3) | 100.9 |
C18—H18B···O1i | 0.97 | 2.39 | 3.314 (3) | 158.9 |
C12—H12A···N3ii | 0.96 | 2.45 | 3.390 (3) | 167.1 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) x−1, y, z. |
Biginelli reaction is one of the most powerful synthetic methodologies for the heterocyclic six-membered rings. 3,4-Dihydropyrimidin-2(1H)-ones (DHPMs) and their derivatives have attracted considerable interest due to their wide range of therapeutic and pharmacological properties, such as antiviral, antitumor, antibacterial and antiinflammatory properties.(Kappe,1993).
We report here the crystal structure of (I) (Fig. 1), which was synthesized by introducing thiazole rings into a Biginelli Dihydropyrimidine molecular framework. The crystal packing shows that the intermolecular C12—H12A···N3i [symmetry code (i) -x + 1,y + 1/2,-z + 3/2] hydrogen bonds link molecules into rows along the c axis,while weak, inversion related C18—H18B···O1ii [symmetry code (ii) x - 1,y,z] hydrogen bonds join parallel rows forming a network, Fig, 2, Table 1.