Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807039785/fl2150sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807039785/fl2150Isup2.hkl |
CCDC reference: 660306
Key indicators
- Single-crystal X-ray study
- T = 90 K
- Mean (C-C) = 0.004 Å
- R factor = 0.042
- wR factor = 0.103
- Data-to-parameter ratio = 8.9
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT430_ALERT_2_B Short Inter D...A Contact O2 .. N3 .. 2.83 Ang. PLAT432_ALERT_2_B Short Inter X...Y Contact O8 .. C8 .. 2.90 Ang.
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ? PLAT432_ALERT_2_C Short Inter X...Y Contact O2 .. C14 .. 2.98 Ang.
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 27.49 From the CIF: _reflns_number_total 2724 Count of symmetry unique reflns 2722 Completeness (_total/calc) 100.07% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 2 Fraction of Friedel pairs measured 0.001 Are heavy atom types Z>Si present no PLAT791_ALERT_1_G Confirm the Absolute Configuration of C1 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C6 = . R
0 ALERT level A = In general: serious problem 2 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
n-BuLi(8.6 ml, 21.5 mmol) was added dropwise to a round-bottom flask containing tert-butyl (1R,2R)-cyclohexane-1,2-diyldicarbamate (3.14 g, 10 mmol) in 20 ml THF cooled with dry ice. After the resulted solutuion was warmed to ambient temperature, 4-nitrophenyl [1,2-diphenyl-2-(2,2,2-trifluoroacetylamino)ethyl]- carbamate (4.03 g, 20 mmol) in 20 ml THF was added dropwise. The mixture was stirred at room temperature overnight. The solution was washed with 1 N NaOH, water and brine, and then dried with anhydrous Na2SO4. After removal of the solvent, the product was recovered as a colorless solid (4.3 g, 91%). Crystals of (I) were obtained by recrystallization from ethyl acetate as colorless blocks.
H atoms were found in difference Fourier maps and subsequently placed in idealized positions with constrained C—H distances of 0.95 Å (CArH), 0.99 Å (CH2), and 1.00 Å (CH1). Uiso(H) values were set to 1.2Ueq for all H atoms. In the absence of significant anomalous scattering effects, Friedel pairs were merged prior to refinement.
The title compound, (I), a chiral C2 symmetric cyclic urea derivative, was obtained as a by-product during an attempt to synthesize a linker for the preparation of chiral oligoureas (Long, 2006). Here we report the structure of it.
The asymmetric unit of (I) (Fig. 1) contains one molecule and the bond lengths and angles are within normal ranges (Allen et al., 1987). The chirality of the C atoms (C1 R, C6 R) was assigned based on the known chirality of the starting material, with the assumption that no chirality change took place during the reaction. The cyclohexane ring has a chair conformation and the cyclic C1/C6/N2/C7/N1 urea unit has a twisted envolope conformation with no four atoms in the same plane, similar to the structure of (4R,5R)-4,5-Diphenylimidazolidin-2-one (Siegler and Long, 2006). Since the molecule has no hydrogen bonding donors, the structure is stablized by weak interactions including π stacking. The molecules stack along the a axis, and the distance between the face-to-face π stacking aromatic rings is 6.059 Å. In addition, intramolecular O···O interaction exists as indicated by the distances (O3···O1 = 2.615 Å, and O1···O6 = 2.662 Å) (Fig. 2).
For geometry, see: Allen et al. (1987). For similar structures, see: Long (2006); Siegler & Long (2006).
Data collection: COLLECT (Nonius, 2002); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP in SHELXTL (Sheldrick, 1995); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997) and local procedures.
C21H18N4O9 | Dx = 1.513 Mg m−3 |
Mr = 470.39 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 4880 reflections |
a = 6.059 (1) Å | θ = 1.0–27.5° |
b = 17.956 (3) Å | µ = 0.12 mm−1 |
c = 18.982 (3) Å | T = 90 K |
V = 2065.2 (6) Å3 | Block, colourless |
Z = 4 | 0.35 × 0.20 × 0.10 mm |
F(000) = 976 |
Nonius KappaCCD diffractometer | 2724 independent reflections |
Radiation source: fine-focus sealed tube | 2209 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
Detector resolution: 18 pixels mm-1 | θmax = 27.5°, θmin = 1.6° |
ω scans at fixed χ = 55° | h = −7→7 |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | k = −23→23 |
Tmin = 0.959, Tmax = 0.988 | l = −24→23 |
9218 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.067P)2] where P = (Fo2 + 2Fc2)/3 |
2724 reflections | (Δ/σ)max < 0.001 |
307 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C21H18N4O9 | V = 2065.2 (6) Å3 |
Mr = 470.39 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.059 (1) Å | µ = 0.12 mm−1 |
b = 17.956 (3) Å | T = 90 K |
c = 18.982 (3) Å | 0.35 × 0.20 × 0.10 mm |
Nonius KappaCCD diffractometer | 2724 independent reflections |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | 2209 reflections with I > 2σ(I) |
Tmin = 0.959, Tmax = 0.988 | Rint = 0.049 |
9218 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.21 e Å−3 |
2724 reflections | Δρmin = −0.31 e Å−3 |
307 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7327 (4) | 0.07569 (12) | 0.30668 (13) | 0.0216 (5) | |
H1 | 0.6373 | 0.0305 | 0.3025 | 0.026* | |
C2 | 0.9611 (4) | 0.05185 (14) | 0.32890 (13) | 0.0255 (6) | |
H2A | 0.9565 | 0.0284 | 0.3761 | 0.031* | |
H2B | 1.0611 | 0.0954 | 0.3309 | 0.031* | |
C3 | 1.0425 (5) | −0.00426 (14) | 0.27372 (13) | 0.0300 (6) | |
H3A | 0.9539 | −0.0504 | 0.2776 | 0.036* | |
H3B | 1.1980 | −0.0172 | 0.2841 | 0.036* | |
C4 | 1.0270 (5) | 0.02536 (14) | 0.19768 (13) | 0.0292 (6) | |
H4A | 1.1389 | 0.0649 | 0.1911 | 0.035* | |
H4B | 1.0627 | −0.0156 | 0.1647 | 0.035* | |
C5 | 0.7995 (5) | 0.05674 (13) | 0.17903 (13) | 0.0254 (6) | |
H5A | 0.8026 | 0.0802 | 0.1318 | 0.030* | |
H5B | 0.6877 | 0.0165 | 0.1788 | 0.030* | |
C6 | 0.7444 (4) | 0.11400 (13) | 0.23481 (12) | 0.0200 (5) | |
H6 | 0.8658 | 0.1517 | 0.2362 | 0.024* | |
C7 | 0.4719 (4) | 0.17341 (12) | 0.30407 (12) | 0.0204 (5) | |
C8 | 0.4582 (4) | 0.19100 (12) | 0.17450 (12) | 0.0198 (5) | |
C9 | 0.1934 (4) | 0.27412 (14) | 0.12998 (12) | 0.0230 (6) | |
C10 | 0.3021 (5) | 0.33867 (14) | 0.10993 (13) | 0.0262 (6) | |
H10 | 0.4412 | 0.3513 | 0.1297 | 0.031* | |
C11 | 0.2022 (5) | 0.38445 (13) | 0.06004 (13) | 0.0260 (6) | |
H11 | 0.2729 | 0.4286 | 0.0441 | 0.031* | |
C12 | −0.0020 (5) | 0.36406 (13) | 0.03427 (12) | 0.0225 (6) | |
C13 | −0.1070 (4) | 0.29878 (14) | 0.05265 (13) | 0.0246 (6) | |
H13 | −0.2452 | 0.2856 | 0.0326 | 0.030* | |
C14 | −0.0045 (4) | 0.25308 (13) | 0.10121 (13) | 0.0244 (6) | |
H14 | −0.0709 | 0.2073 | 0.1146 | 0.029* | |
C15 | 0.5755 (4) | 0.12054 (13) | 0.41966 (12) | 0.0235 (6) | |
C16 | 0.3959 (5) | 0.16923 (13) | 0.51801 (12) | 0.0220 (5) | |
C17 | 0.5086 (5) | 0.19901 (13) | 0.57421 (12) | 0.0232 (5) | |
H17 | 0.6464 | 0.2232 | 0.5677 | 0.028* | |
C18 | 0.4146 (4) | 0.19267 (12) | 0.64138 (13) | 0.0220 (6) | |
H18 | 0.4871 | 0.2124 | 0.6816 | 0.026* | |
C19 | 0.2146 (4) | 0.15713 (13) | 0.64735 (12) | 0.0205 (5) | |
C20 | 0.1017 (4) | 0.12713 (12) | 0.59117 (13) | 0.0220 (5) | |
H20 | −0.0354 | 0.1024 | 0.5978 | 0.026* | |
C21 | 0.1940 (5) | 0.13401 (13) | 0.52468 (13) | 0.0239 (6) | |
H21 | 0.1199 | 0.1149 | 0.4844 | 0.029* | |
N1 | 0.6143 (4) | 0.13238 (10) | 0.34801 (10) | 0.0202 (5) | |
N2 | 0.5302 (4) | 0.15399 (11) | 0.23445 (10) | 0.0207 (4) | |
N3 | −0.1138 (4) | 0.41454 (12) | −0.01561 (11) | 0.0276 (5) | |
N4 | 0.1167 (4) | 0.14975 (11) | 0.71830 (11) | 0.0244 (5) | |
O1 | 0.3305 (3) | 0.21570 (10) | 0.32218 (9) | 0.0259 (4) | |
O2 | 0.5490 (3) | 0.18582 (9) | 0.11838 (8) | 0.0239 (4) | |
O3 | 0.2732 (3) | 0.23065 (9) | 0.18638 (9) | 0.0262 (4) | |
O4 | −0.0114 (4) | 0.46898 (9) | −0.03702 (10) | 0.0365 (5) | |
O5 | −0.3052 (4) | 0.40039 (11) | −0.03286 (10) | 0.0372 (5) | |
O6 | 0.4816 (3) | 0.18046 (8) | 0.44960 (8) | 0.0248 (4) | |
O7 | 0.6268 (4) | 0.06473 (10) | 0.44975 (10) | 0.0385 (5) | |
O8 | 0.2036 (3) | 0.18496 (9) | 0.76670 (9) | 0.0290 (4) | |
O9 | −0.0414 (3) | 0.10836 (10) | 0.72600 (9) | 0.0327 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0264 (13) | 0.0189 (11) | 0.0196 (12) | 0.0002 (10) | 0.0028 (11) | 0.0005 (10) |
C2 | 0.0247 (13) | 0.0286 (12) | 0.0232 (13) | 0.0028 (12) | 0.0020 (12) | 0.0036 (11) |
C3 | 0.0289 (14) | 0.0309 (13) | 0.0302 (14) | 0.0079 (13) | 0.0015 (13) | 0.0012 (12) |
C4 | 0.0328 (15) | 0.0281 (12) | 0.0267 (14) | 0.0069 (12) | 0.0098 (13) | −0.0013 (11) |
C5 | 0.0312 (14) | 0.0237 (12) | 0.0213 (13) | 0.0017 (12) | 0.0022 (12) | −0.0008 (11) |
C6 | 0.0225 (13) | 0.0208 (12) | 0.0167 (11) | 0.0003 (10) | 0.0015 (11) | 0.0028 (10) |
C7 | 0.0218 (12) | 0.0212 (11) | 0.0183 (12) | 0.0010 (11) | 0.0024 (11) | −0.0004 (10) |
C8 | 0.0220 (12) | 0.0202 (11) | 0.0173 (12) | −0.0008 (10) | −0.0036 (11) | 0.0013 (9) |
C9 | 0.0272 (14) | 0.0286 (13) | 0.0132 (11) | 0.0076 (12) | 0.0014 (11) | 0.0022 (10) |
C10 | 0.0274 (14) | 0.0300 (13) | 0.0211 (12) | 0.0010 (12) | −0.0020 (12) | −0.0019 (11) |
C11 | 0.0338 (15) | 0.0237 (12) | 0.0204 (12) | −0.0005 (12) | 0.0016 (12) | −0.0032 (11) |
C12 | 0.0315 (15) | 0.0227 (11) | 0.0132 (11) | 0.0066 (12) | 0.0018 (11) | 0.0006 (9) |
C13 | 0.0225 (13) | 0.0324 (13) | 0.0189 (12) | 0.0001 (11) | −0.0017 (12) | 0.0012 (11) |
C14 | 0.0259 (13) | 0.0265 (12) | 0.0207 (12) | −0.0002 (11) | 0.0053 (12) | 0.0022 (10) |
C15 | 0.0292 (14) | 0.0240 (12) | 0.0174 (11) | 0.0015 (11) | 0.0019 (11) | 0.0031 (10) |
C16 | 0.0313 (14) | 0.0209 (11) | 0.0138 (11) | 0.0038 (11) | 0.0025 (11) | 0.0000 (10) |
C17 | 0.0267 (14) | 0.0223 (11) | 0.0207 (12) | −0.0006 (11) | 0.0015 (11) | 0.0012 (10) |
C18 | 0.0281 (14) | 0.0221 (12) | 0.0158 (11) | −0.0017 (11) | −0.0015 (11) | 0.0010 (10) |
C19 | 0.0263 (14) | 0.0211 (11) | 0.0141 (11) | 0.0023 (11) | 0.0010 (11) | 0.0000 (9) |
C20 | 0.0211 (12) | 0.0220 (11) | 0.0230 (12) | −0.0008 (11) | −0.0004 (11) | −0.0001 (10) |
C21 | 0.0328 (15) | 0.0203 (12) | 0.0186 (12) | 0.0010 (12) | −0.0050 (12) | −0.0017 (10) |
N1 | 0.0258 (11) | 0.0205 (9) | 0.0144 (9) | 0.0053 (9) | 0.0028 (9) | 0.0011 (8) |
N2 | 0.0239 (11) | 0.0239 (10) | 0.0143 (10) | 0.0040 (9) | 0.0008 (9) | 0.0020 (8) |
N3 | 0.0346 (14) | 0.0267 (11) | 0.0214 (11) | 0.0053 (11) | −0.0009 (11) | −0.0009 (9) |
N4 | 0.0297 (12) | 0.0228 (10) | 0.0206 (11) | 0.0008 (10) | 0.0022 (10) | 0.0004 (9) |
O1 | 0.0294 (10) | 0.0306 (9) | 0.0175 (9) | 0.0074 (9) | 0.0019 (8) | 0.0022 (8) |
O2 | 0.0292 (10) | 0.0268 (9) | 0.0156 (8) | 0.0015 (8) | 0.0025 (8) | −0.0010 (7) |
O3 | 0.0251 (9) | 0.0360 (9) | 0.0174 (8) | 0.0087 (8) | 0.0012 (8) | 0.0082 (8) |
O4 | 0.0520 (14) | 0.0241 (9) | 0.0333 (11) | −0.0013 (10) | −0.0014 (11) | 0.0062 (8) |
O5 | 0.0337 (12) | 0.0447 (12) | 0.0332 (11) | 0.0078 (10) | −0.0082 (10) | 0.0078 (9) |
O6 | 0.0363 (11) | 0.0229 (8) | 0.0150 (8) | 0.0035 (8) | 0.0055 (8) | 0.0013 (7) |
O7 | 0.0573 (14) | 0.0358 (10) | 0.0223 (9) | 0.0176 (10) | 0.0088 (10) | 0.0091 (9) |
O8 | 0.0342 (10) | 0.0347 (10) | 0.0180 (9) | −0.0028 (9) | 0.0027 (9) | −0.0059 (8) |
O9 | 0.0354 (11) | 0.0338 (10) | 0.0290 (10) | −0.0123 (9) | 0.0093 (10) | −0.0017 (8) |
C1—N1 | 1.472 (3) | C10—H10 | 0.9500 |
C1—C2 | 1.509 (4) | C11—C12 | 1.380 (4) |
C1—C6 | 1.530 (3) | C11—H11 | 0.9500 |
C1—H1 | 1.0000 | C12—C13 | 1.378 (3) |
C2—C3 | 1.535 (3) | C12—N3 | 1.476 (3) |
C2—H2A | 0.9900 | C13—C14 | 1.381 (3) |
C2—H2B | 0.9900 | C13—H13 | 0.9500 |
C3—C4 | 1.541 (3) | C14—H14 | 0.9500 |
C3—H3A | 0.9900 | C15—O7 | 1.194 (3) |
C3—H3B | 0.9900 | C15—O6 | 1.343 (3) |
C4—C5 | 1.531 (4) | C15—N1 | 1.397 (3) |
C4—H4A | 0.9900 | C16—C17 | 1.375 (4) |
C4—H4B | 0.9900 | C16—C21 | 1.383 (4) |
C5—C6 | 1.513 (3) | C16—O6 | 1.413 (3) |
C5—H5A | 0.9900 | C17—C18 | 1.401 (3) |
C5—H5B | 0.9900 | C17—H17 | 0.9500 |
C6—N2 | 1.484 (3) | C18—C19 | 1.374 (4) |
C6—H6 | 1.0000 | C18—H18 | 0.9500 |
C7—O1 | 1.195 (3) | C19—C20 | 1.377 (3) |
C7—N1 | 1.408 (3) | C19—N4 | 1.477 (3) |
C7—N2 | 1.412 (3) | C20—C21 | 1.386 (3) |
C8—O2 | 1.202 (3) | C20—H20 | 0.9500 |
C8—O3 | 1.347 (3) | C21—H21 | 0.9500 |
C8—N2 | 1.388 (3) | N3—O4 | 1.227 (3) |
C9—C14 | 1.371 (4) | N3—O5 | 1.232 (3) |
C9—C10 | 1.386 (4) | N4—O9 | 1.222 (3) |
C9—O3 | 1.410 (3) | N4—O8 | 1.233 (3) |
C10—C11 | 1.393 (4) | ||
N1—C1—C2 | 119.6 (2) | C12—C11—C10 | 118.3 (2) |
N1—C1—C6 | 100.78 (17) | C12—C11—H11 | 120.9 |
C2—C1—C6 | 109.5 (2) | C10—C11—H11 | 120.9 |
N1—C1—H1 | 108.8 | C13—C12—C11 | 123.3 (2) |
C2—C1—H1 | 108.8 | C13—C12—N3 | 118.2 (2) |
C6—C1—H1 | 108.8 | C11—C12—N3 | 118.4 (2) |
C1—C2—C3 | 106.9 (2) | C12—C13—C14 | 117.8 (2) |
C1—C2—H2A | 110.3 | C12—C13—H13 | 121.1 |
C3—C2—H2A | 110.3 | C14—C13—H13 | 121.1 |
C1—C2—H2B | 110.3 | C9—C14—C13 | 119.7 (2) |
C3—C2—H2B | 110.3 | C9—C14—H14 | 120.2 |
H2A—C2—H2B | 108.6 | C13—C14—H14 | 120.2 |
C2—C3—C4 | 113.1 (2) | O7—C15—O6 | 125.4 (2) |
C2—C3—H3A | 109.0 | O7—C15—N1 | 123.3 (2) |
C4—C3—H3A | 108.9 | O6—C15—N1 | 111.2 (2) |
C2—C3—H3B | 108.9 | C17—C16—C21 | 123.1 (2) |
C4—C3—H3B | 108.9 | C17—C16—O6 | 118.4 (2) |
H3A—C3—H3B | 107.8 | C21—C16—O6 | 118.3 (2) |
C5—C4—C3 | 113.5 (2) | C16—C17—C18 | 118.2 (2) |
C5—C4—H4A | 108.9 | C16—C17—H17 | 120.9 |
C3—C4—H4A | 108.9 | C18—C17—H17 | 120.9 |
C5—C4—H4B | 108.9 | C19—C18—C17 | 118.1 (2) |
C3—C4—H4B | 108.9 | C19—C18—H18 | 120.9 |
H4A—C4—H4B | 107.7 | C17—C18—H18 | 120.9 |
C6—C5—C4 | 106.7 (2) | C18—C19—C20 | 123.8 (2) |
C6—C5—H5A | 110.4 | C18—C19—N4 | 118.1 (2) |
C4—C5—H5A | 110.4 | C20—C19—N4 | 118.1 (2) |
C6—C5—H5B | 110.4 | C19—C20—C21 | 118.0 (2) |
C4—C5—H5B | 110.4 | C19—C20—H20 | 121.0 |
H5A—C5—H5B | 108.6 | C21—C20—H20 | 121.0 |
N2—C6—C5 | 121.2 (2) | C16—C21—C20 | 118.7 (2) |
N2—C6—C1 | 100.43 (19) | C16—C21—H21 | 120.6 |
C5—C6—C1 | 109.19 (18) | C20—C21—H21 | 120.6 |
N2—C6—H6 | 108.4 | C15—N1—C7 | 123.6 (2) |
C5—C6—H6 | 108.4 | C15—N1—C1 | 119.72 (19) |
C1—C6—H6 | 108.4 | C7—N1—C1 | 110.17 (19) |
O1—C7—N1 | 127.0 (2) | C8—N2—C7 | 124.80 (19) |
O1—C7—N2 | 127.3 (2) | C8—N2—C6 | 120.69 (19) |
N1—C7—N2 | 105.78 (19) | C7—N2—C6 | 109.51 (19) |
O2—C8—O3 | 124.8 (2) | O4—N3—O5 | 123.5 (2) |
O2—C8—N2 | 123.1 (2) | O4—N3—C12 | 118.0 (2) |
O3—C8—N2 | 112.2 (2) | O5—N3—C12 | 118.4 (2) |
C14—C9—C10 | 122.5 (2) | O9—N4—O8 | 123.9 (2) |
C14—C9—O3 | 116.7 (2) | O9—N4—C19 | 118.6 (2) |
C10—C9—O3 | 120.5 (2) | O8—N4—C19 | 117.5 (2) |
C9—C10—C11 | 118.3 (2) | C8—O3—C9 | 116.79 (19) |
C9—C10—H10 | 120.9 | C15—O6—C16 | 115.47 (17) |
C11—C10—H10 | 120.9 | ||
N1—C1—C2—C3 | −177.3 (2) | N2—C7—N1—C15 | −162.8 (2) |
C6—C1—C2—C3 | −61.9 (3) | O1—C7—N1—C1 | 168.4 (2) |
C1—C2—C3—C4 | 53.0 (3) | N2—C7—N1—C1 | −11.4 (3) |
C2—C3—C4—C5 | −51.1 (3) | C2—C1—N1—C15 | −57.4 (3) |
C3—C4—C5—C6 | 53.6 (3) | C6—C1—N1—C15 | −177.4 (2) |
C4—C5—C6—N2 | −177.9 (2) | C2—C1—N1—C7 | 149.8 (2) |
C4—C5—C6—C1 | −62.1 (3) | C6—C1—N1—C7 | 29.9 (3) |
N1—C1—C6—N2 | −34.9 (2) | O2—C8—N2—C7 | 161.2 (2) |
C2—C1—C6—N2 | −161.84 (19) | O3—C8—N2—C7 | −20.9 (3) |
N1—C1—C6—C5 | −163.4 (2) | O2—C8—N2—C6 | 8.9 (3) |
C2—C1—C6—C5 | 69.7 (3) | O3—C8—N2—C6 | −173.17 (18) |
C14—C9—C10—C11 | 1.8 (4) | O1—C7—N2—C8 | 12.1 (4) |
O3—C9—C10—C11 | −172.1 (2) | N1—C7—N2—C8 | −168.1 (2) |
C9—C10—C11—C12 | 1.4 (4) | O1—C7—N2—C6 | 167.0 (2) |
C10—C11—C12—C13 | −3.5 (4) | N1—C7—N2—C6 | −13.2 (2) |
C10—C11—C12—N3 | 176.6 (2) | C5—C6—N2—C8 | −52.9 (3) |
C11—C12—C13—C14 | 2.3 (4) | C1—C6—N2—C8 | −173.1 (2) |
N3—C12—C13—C14 | −177.8 (2) | C5—C6—N2—C7 | 151.0 (2) |
C10—C9—C14—C13 | −3.0 (4) | C1—C6—N2—C7 | 30.8 (2) |
O3—C9—C14—C13 | 171.1 (2) | C13—C12—N3—O4 | −173.2 (2) |
C12—C13—C14—C9 | 1.0 (4) | C11—C12—N3—O4 | 6.7 (3) |
C21—C16—C17—C18 | 0.6 (4) | C13—C12—N3—O5 | 7.6 (3) |
O6—C16—C17—C18 | 175.2 (2) | C11—C12—N3—O5 | −172.5 (2) |
C16—C17—C18—C19 | −0.1 (3) | C18—C19—N4—O9 | −168.4 (2) |
C17—C18—C19—C20 | 0.3 (4) | C20—C19—N4—O9 | 10.7 (3) |
C17—C18—C19—N4 | 179.4 (2) | C18—C19—N4—O8 | 10.1 (3) |
C18—C19—C20—C21 | −0.8 (4) | C20—C19—N4—O8 | −170.7 (2) |
N4—C19—C20—C21 | −179.9 (2) | O2—C8—O3—C9 | −5.8 (3) |
C17—C16—C21—C20 | −1.1 (4) | N2—C8—O3—C9 | 176.2 (2) |
O6—C16—C21—C20 | −175.8 (2) | C14—C9—O3—C8 | 113.1 (2) |
C19—C20—C21—C16 | 1.2 (3) | C10—C9—O3—C8 | −72.7 (3) |
O7—C15—N1—C7 | 146.1 (3) | O7—C15—O6—C16 | −14.2 (4) |
O6—C15—N1—C7 | −36.0 (3) | N1—C15—O6—C16 | 167.9 (2) |
O7—C15—N1—C1 | −2.8 (4) | C17—C16—O6—C15 | 106.5 (3) |
O6—C15—N1—C1 | 175.1 (2) | C21—C16—O6—C15 | −78.6 (3) |
O1—C7—N1—C15 | 16.9 (4) |
Experimental details
Crystal data | |
Chemical formula | C21H18N4O9 |
Mr | 470.39 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 90 |
a, b, c (Å) | 6.059 (1), 17.956 (3), 18.982 (3) |
V (Å3) | 2065.2 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.35 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Nonius KappaCCD |
Absorption correction | Multi-scan (SCALEPACK; Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.959, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9218, 2724, 2209 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.103, 1.04 |
No. of reflections | 2724 |
No. of parameters | 307 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.31 |
Computer programs: COLLECT (Nonius, 2002), SCALEPACK (Otwinowski & Minor, 1997), DENZO-SMN (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 1997), XP in SHELXTL (Sheldrick, 1995), SHELXL97 (Sheldrick, 1997) and local procedures.
The title compound, (I), a chiral C2 symmetric cyclic urea derivative, was obtained as a by-product during an attempt to synthesize a linker for the preparation of chiral oligoureas (Long, 2006). Here we report the structure of it.
The asymmetric unit of (I) (Fig. 1) contains one molecule and the bond lengths and angles are within normal ranges (Allen et al., 1987). The chirality of the C atoms (C1 R, C6 R) was assigned based on the known chirality of the starting material, with the assumption that no chirality change took place during the reaction. The cyclohexane ring has a chair conformation and the cyclic C1/C6/N2/C7/N1 urea unit has a twisted envolope conformation with no four atoms in the same plane, similar to the structure of (4R,5R)-4,5-Diphenylimidazolidin-2-one (Siegler and Long, 2006). Since the molecule has no hydrogen bonding donors, the structure is stablized by weak interactions including π stacking. The molecules stack along the a axis, and the distance between the face-to-face π stacking aromatic rings is 6.059 Å. In addition, intramolecular O···O interaction exists as indicated by the distances (O3···O1 = 2.615 Å, and O1···O6 = 2.662 Å) (Fig. 2).