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In the title compound, C12H21N2O2P, the P—N bond lengths of 1.617 (2) and 1.645 (3) Å are shorter than a normal P—N single bond. The sum of the bond angles around the phospho­ramide N atoms of 353° indicates their sp2-hybridization. Mol­ecules are linked via N—H...O=P hydrogen bonds into a one-dimensional chain parallel to the c axis.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807045679/gk2098sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536807045679/gk2098Isup2.hkl
Contains datablock I

CCDC reference: 663792

Key indicators

  • Single-crystal X-ray study
  • T = 100 K
  • Mean [sigma](C-C) = 0.005 Å
  • R factor = 0.057
  • wR factor = 0.093
  • Data-to-parameter ratio = 18.0

checkCIF/PLATON results

No syntax errors found



Alert level C RINTA01_ALERT_3_C The value of Rint is greater than 0.10 Rint given 0.107 PLAT020_ALERT_3_C The value of Rint is greater than 0.10 ......... 0.11 PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 5
Alert level G PLAT793_ALERT_1_G Check the Absolute Configuration of P1 = ... R
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 3 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check

Comment top

Acetylcholinesterase (AChE) enzyme inhibition by organophosphorus (OPs) compounds is well known (Ekstrom et al., 2006). It is generally governed by intramolecular properties (lipophilicity, electronic, steric) and three-dimensional structure of OPs (Singh, 1999). The range of herbicides which can be derived from OPs is very large indeed. For example, Amiprofos-methyl [O-methyl O-(4-methyl-2-nitrophenyl) N-isopropyl phosphoramidothioate] is a herbicidal organophosphate (Fest & Schmidt, 1982). In our previous work, we reported on the structure of N,N-dimethyl O-p-tolyl phosphoramidocyanidate (Ghadimi et al., 2007). Here, we report the synthesis and crystal structure of the title compound. The four different groups linked to P atom give rise to a distorted tetrahedral configuration (Figure 1). The bond angles around P atom are in the range of 102.76 (14)° [for O2—P1—N2 amgle] to 114.77 (14)° [for the O1—P1—N2 angle]. The P1—O2 bond length [1.607 (2) Å] is shorter than the P—O single bond length (1.64 Å; Corbridge, 1995). Also, the P—N bond lengths [P1—N1 = 1.645 (3) Å and P1—N2 = 1.617 (2) Å] are shorter than the P—N single bond length (1.77 Å; Corbridge, 1995). The sum of the surrounding angles around N1 nad N2 (about 353°) points to sp2 hybridization for the nitrogen atoms. Molecules are linked via N—H···O=P hydrogen bonds (Table 1, Fig. 2|) into one-dimensional chains parallel to the c axis.

Related literature top

For related literature, see: Corbridge (1995); Ekstrom et al. (2006); Fest & Schmidt (1982); Ghadimi et al. (2007); Singh (1999).

Experimental top

To a solution of N,N-dimethyl phosphoramidochloridic acid 4-methyl phenyl ester (0.82 g, 3.51 mmol) in 30 ml dry chloroform, isoprophylamine (0.41 g, 7.02 mmol) was added slowly and solution stirred at 273 K for 5 h. The solvent was evaporated in vacuum. Then the product was washed with water to remove [(CH3)2CHNH3]Cl. After drying, the product was crystallized from chloroform at room temperature.

Refinement top

The H atom of the NH group was found in a difference Fourier map and the remaining H atoms were placed in calculated positions. They were refined in riding model approximation with Uiso(H) = 1.2Ueq(N,C) or 1.5Ueq(C) for methyl groups.

Structure description top

Acetylcholinesterase (AChE) enzyme inhibition by organophosphorus (OPs) compounds is well known (Ekstrom et al., 2006). It is generally governed by intramolecular properties (lipophilicity, electronic, steric) and three-dimensional structure of OPs (Singh, 1999). The range of herbicides which can be derived from OPs is very large indeed. For example, Amiprofos-methyl [O-methyl O-(4-methyl-2-nitrophenyl) N-isopropyl phosphoramidothioate] is a herbicidal organophosphate (Fest & Schmidt, 1982). In our previous work, we reported on the structure of N,N-dimethyl O-p-tolyl phosphoramidocyanidate (Ghadimi et al., 2007). Here, we report the synthesis and crystal structure of the title compound. The four different groups linked to P atom give rise to a distorted tetrahedral configuration (Figure 1). The bond angles around P atom are in the range of 102.76 (14)° [for O2—P1—N2 amgle] to 114.77 (14)° [for the O1—P1—N2 angle]. The P1—O2 bond length [1.607 (2) Å] is shorter than the P—O single bond length (1.64 Å; Corbridge, 1995). Also, the P—N bond lengths [P1—N1 = 1.645 (3) Å and P1—N2 = 1.617 (2) Å] are shorter than the P—N single bond length (1.77 Å; Corbridge, 1995). The sum of the surrounding angles around N1 nad N2 (about 353°) points to sp2 hybridization for the nitrogen atoms. Molecules are linked via N—H···O=P hydrogen bonds (Table 1, Fig. 2|) into one-dimensional chains parallel to the c axis.

For related literature, see: Corbridge (1995); Ekstrom et al. (2006); Fest & Schmidt (1982); Ghadimi et al. (2007); Singh (1999).

Computing details top

Data collection: APEX2 (Bruker, 2005); cell refinement: APEX2 (Bruker, 2005; data reduction: APEX2 (Bruker, 2005; program(s) used to solve structure: SHELXTL (Bruker, 1998); program(s) used to refine structure: SHELXTL (Bruker, 1998); molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL (Bruker, 1998).

Figures top
[Figure 1] Fig. 1. The molecular structure of title compound showing the atom-numbering scheme. All non-H atoms are represented by 40% probability displacement ellipsoids.
[Figure 2] Fig. 2. A view of crystal packing of the title compound
4-Methylphenyl (dimethylamido)(isopropylamido)phosphate top
Crystal data top
C12H21N2O2PF(000) = 552
Mr = 256.28Dx = 1.203 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 16.711 (5) ÅCell parameters from 498 reflections
b = 8.306 (2) Åθ = 3–20°
c = 10.425 (3) ŵ = 0.19 mm1
β = 101.963 (9)°T = 100 K
V = 1415.6 (7) Å3Needle, colorless
Z = 40.21 × 0.09 × 0.08 mm
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
2779 independent reflections
Radiation source: fine-focus sealed tube1418 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.107
Detector resolution: 0 pixels mm-1θmax = 26.0°, θmin = 1.3°
π and ω scansh = 2019
Absorption correction: multi-scan
(APEX2; Bruker, 2005)
k = 108
Tmin = 0.963, Tmax = 0.987l = 1212
6264 measured reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: mixed
wR(F2) = 0.093H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.01P)2 + 0.01P]
where P = (Fo2 + 2Fc2)/3
2779 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = 0.28 e Å3
Crystal data top
C12H21N2O2PV = 1415.6 (7) Å3
Mr = 256.28Z = 4
Monoclinic, P21/cMo Kα radiation
a = 16.711 (5) ŵ = 0.19 mm1
b = 8.306 (2) ÅT = 100 K
c = 10.425 (3) Å0.21 × 0.09 × 0.08 mm
β = 101.963 (9)°
Data collection top
Bruker SMART APEXII CCD area-detector
diffractometer
2779 independent reflections
Absorption correction: multi-scan
(APEX2; Bruker, 2005)
1418 reflections with I > 2σ(I)
Tmin = 0.963, Tmax = 0.987Rint = 0.107
6264 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0570 restraints
wR(F2) = 0.093H-atom parameters constrained
S = 1.00Δρmax = 0.27 e Å3
2779 reflectionsΔρmin = 0.28 e Å3
154 parameters
Special details top

Experimental. 1H NMR (CDCl3, p.p.m.): 1.12 (d, 3H, 3JH—H = 6.5 Hz, isopropylamine-CH3), 1.15 (d, 3H, 3JH—H = 6.4 Hz, isopropylamine-CH3), 2.25 (s, 3 H, p-CH3), 2.33 (b, 1H, NH), 2.68 (d, 3JPNCH = 10.1 Hz, 6H, N(CH3)2), 3.38–3.39 (m, 1H, isopropylamine-CH), 7.03 (m, 4 H, Ar—H); 13C NMR (CDCl3, p.p.m.): 20.64 (s, 1 C, p-CH3), 25.27 (d, 3JP—C = 5.9 Hz, 1 C, isopropylamine-CH3), 25.52 (d, 3JP—C = 5.3 Hz, 1 C, isopropylamine-CH3), 36.96 (d, 2JP—C = 3.8 Hz, 2 C, N(CH3)2), 43.38 (s, 1 C, isopropylamine-CH), 119.92 (d, 3JP—C = 4.8 Hz, 2 C, Cortho), 129.96 (s, 2 C, Cmeta), 133.50 (s, 1 C, Cpara), 149.12 (d, 2JP—C = 6.1 Hz, 1 C, Cipso); 31P{1H} NMR (CDCl3, p.p.m.): 13.70 (s); 31P NMR (CDCl3, p.p.m.): 13.70 (m). IR (KBr, cm-1): 3210, 2949, 2940, 1599, 1499, 1455, 1297, 1227 (P=O), 1198, 1162, 1040, 985, 906, 816, 794, 705.

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
P10.21748 (6)0.33403 (11)0.82100 (9)0.0181 (2)
O10.20364 (14)0.3011 (2)0.6793 (2)0.0226 (6)
O20.30994 (14)0.3037 (2)0.8981 (2)0.0179 (6)
N10.20238 (18)0.5259 (3)0.8471 (3)0.0209 (7)
N20.16505 (16)0.2225 (3)0.9006 (3)0.0178 (7)
H20.18380.21900.98850.021*
C10.2200 (2)0.6460 (4)0.7554 (4)0.0310 (10)
H1A0.18380.73890.75520.047*
H1B0.21090.59950.66710.047*
H1C0.27710.68070.78190.047*
C20.2109 (2)0.5839 (4)0.9817 (4)0.0295 (10)
H2A0.17540.67760.98270.044*
H2B0.26790.61471.01630.044*
H2C0.19510.49831.03620.044*
C30.0771 (2)0.1973 (4)0.8552 (3)0.0226 (9)
H3A0.06210.22660.76020.027*
C40.0277 (2)0.3017 (4)0.9294 (3)0.0318 (10)
H4A0.03070.27860.89890.048*
H4B0.03800.41550.91390.048*
H4C0.04370.27861.02350.048*
C50.0583 (2)0.0194 (4)0.8689 (4)0.0374 (12)
H5A0.08790.04460.81490.056*
H5B0.00060.00130.83980.056*
H5C0.07550.01300.96090.056*
C60.3447 (2)0.1490 (4)0.9015 (3)0.0175 (8)
C70.3480 (2)0.0556 (4)1.0113 (3)0.0205 (9)
H7A0.32500.09341.08180.025*
C80.3849 (2)0.0936 (4)1.0182 (4)0.0232 (9)
H8A0.38650.15871.09360.028*
C90.4196 (2)0.1501 (4)0.9174 (3)0.0207 (8)
C100.4153 (2)0.0534 (4)0.8082 (4)0.0234 (9)
H10A0.43840.09050.73780.028*
C110.3777 (2)0.0973 (4)0.7989 (4)0.0216 (9)
H11A0.37510.16250.72320.026*
C120.4589 (2)0.3151 (4)0.9248 (4)0.0292 (9)
H12A0.48160.33300.84660.044*
H12B0.41760.39750.92950.044*
H12C0.50280.32151.00320.044*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
P10.0254 (6)0.0142 (4)0.0153 (5)0.0006 (5)0.0058 (4)0.0004 (5)
O10.0359 (16)0.0207 (13)0.0121 (13)0.0013 (11)0.0068 (12)0.0009 (11)
O20.0202 (14)0.0117 (11)0.0206 (14)0.0012 (10)0.0014 (11)0.0038 (11)
N10.033 (2)0.0132 (14)0.0159 (18)0.0009 (14)0.0048 (16)0.0028 (14)
N20.0220 (18)0.0200 (14)0.0118 (16)0.0046 (13)0.0039 (14)0.0012 (13)
C10.043 (3)0.0160 (17)0.034 (2)0.0009 (19)0.007 (2)0.0012 (19)
C20.039 (3)0.0219 (18)0.029 (2)0.0020 (18)0.010 (2)0.0100 (18)
C30.023 (2)0.028 (2)0.017 (2)0.0006 (18)0.0033 (18)0.0026 (17)
C40.030 (2)0.036 (2)0.030 (2)0.000 (2)0.008 (2)0.001 (2)
C50.037 (3)0.027 (2)0.050 (3)0.0136 (19)0.014 (3)0.013 (2)
C60.017 (2)0.0136 (17)0.023 (2)0.0033 (16)0.0056 (17)0.0037 (18)
C70.027 (2)0.0175 (18)0.018 (2)0.0015 (17)0.0075 (18)0.0054 (17)
C80.026 (2)0.0178 (18)0.025 (2)0.0033 (17)0.0036 (19)0.0023 (17)
C90.020 (2)0.0163 (17)0.026 (2)0.0027 (17)0.0057 (18)0.0023 (18)
C100.025 (2)0.028 (2)0.019 (2)0.0005 (17)0.0089 (19)0.0066 (18)
C110.030 (2)0.0151 (17)0.022 (2)0.0002 (17)0.0086 (19)0.0010 (17)
C120.030 (2)0.0192 (19)0.039 (2)0.0032 (18)0.007 (2)0.0010 (19)
Geometric parameters (Å, º) top
P1—O11.473 (2)C4—H4B0.9800
P1—O21.607 (2)C4—H4C0.9800
P1—N21.617 (2)C5—H5A0.9800
P1—N11.645 (3)C5—H5B0.9800
O2—C61.408 (3)C5—H5C0.9800
N1—C11.454 (4)C6—C111.370 (4)
N1—C21.463 (4)C6—C71.375 (4)
N2—C31.462 (4)C7—C81.379 (4)
N2—H20.9055C7—H7A0.9500
C1—H1A0.9800C8—C91.384 (4)
C1—H1B0.9800C8—H8A0.9500
C1—H1C0.9800C9—C101.383 (4)
C2—H2A0.9800C9—C121.514 (4)
C2—H2B0.9800C10—C111.394 (4)
C2—H2C0.9800C10—H10A0.9500
C3—C41.517 (4)C11—H11A0.9500
C3—C51.524 (4)C12—H12A0.9800
C3—H3A1.0000C12—H12B0.9800
C4—H4A0.9800C12—H12C0.9800
O1—P1—O2114.03 (13)C3—C4—H4C109.5
O1—P1—N2114.77 (14)H4A—C4—H4C109.5
O2—P1—N2102.76 (14)H4B—C4—H4C109.5
O1—P1—N1110.38 (14)C3—C5—H5A109.5
O2—P1—N1103.52 (14)C3—C5—H5B109.5
N2—P1—N1110.63 (13)H5A—C5—H5B109.5
C6—O2—P1120.3 (2)C3—C5—H5C109.5
C1—N1—C2114.3 (3)H5A—C5—H5C109.5
C1—N1—P1119.8 (2)H5B—C5—H5C109.5
C2—N1—P1119.4 (2)C11—C6—C7121.4 (3)
C3—N2—P1122.1 (2)C11—C6—O2119.8 (3)
C3—N2—H2115.9C7—C6—O2118.8 (3)
P1—N2—H2115.2C6—C7—C8119.4 (3)
N1—C1—H1A109.5C6—C7—H7A120.3
N1—C1—H1B109.5C8—C7—H7A120.3
H1A—C1—H1B109.5C7—C8—C9121.3 (3)
N1—C1—H1C109.5C7—C8—H8A119.4
H1A—C1—H1C109.5C9—C8—H8A119.4
H1B—C1—H1C109.5C10—C9—C8118.0 (3)
N1—C2—H2A109.5C10—C9—C12121.1 (3)
N1—C2—H2B109.5C8—C9—C12120.9 (3)
H2A—C2—H2B109.5C9—C10—C11121.7 (3)
N1—C2—H2C109.5C9—C10—H10A119.2
H2A—C2—H2C109.5C11—C10—H10A119.2
H2B—C2—H2C109.5C6—C11—C10118.3 (3)
N2—C3—C4111.7 (3)C6—C11—H11A120.8
N2—C3—C5108.8 (3)C10—C11—H11A120.8
C4—C3—C5111.2 (3)C9—C12—H12A109.5
N2—C3—H3A108.3C9—C12—H12B109.5
C4—C3—H3A108.3H12A—C12—H12B109.5
C5—C3—H3A108.3C9—C12—H12C109.5
C3—C4—H4A109.5H12A—C12—H12C109.5
C3—C4—H4B109.5H12B—C12—H12C109.5
H4A—C4—H4B109.5
O1—P1—O2—C661.9 (2)P1—N2—C3—C5136.0 (2)
N2—P1—O2—C662.9 (2)P1—O2—C6—C1183.0 (3)
N1—P1—O2—C6178.1 (2)P1—O2—C6—C799.9 (3)
O1—P1—N1—C131.4 (3)C11—C6—C7—C80.3 (5)
O2—P1—N1—C191.1 (3)O2—C6—C7—C8177.3 (3)
N2—P1—N1—C1159.5 (3)C6—C7—C8—C90.9 (5)
O1—P1—N1—C2178.5 (2)C7—C8—C9—C100.9 (5)
O2—P1—N1—C259.1 (3)C7—C8—C9—C12179.0 (3)
N2—P1—N1—C250.3 (3)C8—C9—C10—C110.4 (5)
O1—P1—N2—C348.3 (3)C12—C9—C10—C11178.6 (3)
O2—P1—N2—C3172.7 (2)C7—C6—C11—C100.1 (5)
N1—P1—N2—C377.4 (3)O2—C6—C11—C10176.9 (3)
P1—N2—C3—C4100.8 (3)C9—C10—C11—C60.1 (5)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.911.962.849 (4)169
Symmetry code: (i) x, y+1/2, z+1/2.

Experimental details

Crystal data
Chemical formulaC12H21N2O2P
Mr256.28
Crystal system, space groupMonoclinic, P21/c
Temperature (K)100
a, b, c (Å)16.711 (5), 8.306 (2), 10.425 (3)
β (°) 101.963 (9)
V3)1415.6 (7)
Z4
Radiation typeMo Kα
µ (mm1)0.19
Crystal size (mm)0.21 × 0.09 × 0.08
Data collection
DiffractometerBruker SMART APEXII CCD area-detector
Absorption correctionMulti-scan
(APEX2; Bruker, 2005)
Tmin, Tmax0.963, 0.987
No. of measured, independent and
observed [I > 2σ(I)] reflections
6264, 2779, 1418
Rint0.107
(sin θ/λ)max1)0.617
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.057, 0.093, 1.00
No. of reflections2779
No. of parameters154
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.27, 0.28

Computer programs: APEX2 (Bruker, 2005), APEX2 (Bruker, 2005, SHELXTL (Bruker, 1998).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.911.9552.849 (4)169
Symmetry code: (i) x, y+1/2, z+1/2.
 

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