Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807042353/hb2519sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807042353/hb2519Isup2.hkl |
CCDC reference: 663685
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.004 Å
- R factor = 0.064
- wR factor = 0.179
- Data-to-parameter ratio = 16.2
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
Alert level G PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Genistein (0.27 g, 1 mmol), iodomethane (0.26 ml, 2 mmol) and potassium carbonate (0.14 g, 1 mmol) in 50 ml of dry acetone were sonicated. After the completion of reaction, the mixture was cooled to room temperature followed by filtration. The filtrate was distilled to give a yellow solid and the solid was dissolved in 15 ml dry pyridine, then acetic anhydride (0.22 ml, 11 mmol) was added, and the mixed solution was stirred at room temperature for 24 h. After that the solution was poured into a 10% solution of aqueous hydrochloric acid (50 ml). The white deposits that precipitated were separated from the solvents by filtration. They were washed with aqueous saturated sodium bicarbonate twice. The solid was dissolved in acetone (15 ml) and stirred for about 10 min to give a clear solution. After keeping the solution in air for 10 d, colorless blocks of (I) were formed at the bottom of the vesssl on slow evaporation of the solvent. They were collected, washed three times with acetone and dried in a vacuum desiccator using CaCl2. The compound was isolated in 90% yield.
All H atoms were positioned geometrically (C—H = 0.93–0.96 Å) and refined as riding with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
Genistein derivatives play an important role in organic chemistry (Kim et al., 2004; Li et al., 2006). In the genistein derived title compound, (I) (Fig. 1), the bond lengths and angles are within their normal ranges (Allen et al., 1987). The dihedral angle between the least-squares planes of the two benzene rings (C1—C6 and C9—C14) is 52.81 (9) °. The crystal packing for (I) is stabilized by van der Waals forces.
For background literature, see: Kim et al. (2004); Li et al. (2006). For reference structural data, see: Allen et al. (1987).
Data collection: SMART (Bruker, 2001); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2001); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
Fig. 1. The molecular structure of (I) showing 30% probability displacement ellipsoids for the non-hydrogen atoms. |
C19H16O6 | F(000) = 712 |
Mr = 340.32 | Dx = 1.384 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1520 reflections |
a = 14.2159 (16) Å | θ = 2.3–26.6° |
b = 12.7207 (15) Å | µ = 0.10 mm−1 |
c = 9.2200 (11) Å | T = 293 K |
β = 101.668 (2)° | Block, colourless |
V = 1632.9 (3) Å3 | 0.30 × 0.20 × 0.14 mm |
Z = 4 |
Bruker SMART CCD diffractometer | 3720 independent reflections |
Radiation source: fine-focus sealed tube | 2142 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.075 |
ω scans | θmax = 27.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −15→18 |
Tmin = 0.970, Tmax = 0.986 | k = −16→16 |
11970 measured reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.064 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.180 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0811P)2] where P = (Fo2 + 2Fc2)/3 |
3720 reflections | (Δ/σ)max < 0.001 |
229 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C19H16O6 | V = 1632.9 (3) Å3 |
Mr = 340.32 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.2159 (16) Å | µ = 0.10 mm−1 |
b = 12.7207 (15) Å | T = 293 K |
c = 9.2200 (11) Å | 0.30 × 0.20 × 0.14 mm |
β = 101.668 (2)° |
Bruker SMART CCD diffractometer | 3720 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 2142 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.986 | Rint = 0.075 |
11970 measured reflections |
R[F2 > 2σ(F2)] = 0.064 | 0 restraints |
wR(F2) = 0.180 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.31 e Å−3 |
3720 reflections | Δρmin = −0.19 e Å−3 |
229 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.46623 (14) | 0.37820 (16) | 0.9119 (2) | 0.0650 (6) | |
O2 | 0.30929 (12) | 0.56268 (14) | 0.2772 (2) | 0.0565 (5) | |
O3 | 0.10811 (12) | 0.33410 (13) | 0.15629 (19) | 0.0507 (5) | |
O4 | 0.00398 (13) | 0.47929 (15) | −0.32341 (19) | 0.0602 (5) | |
O5 | 0.25889 (13) | 0.64147 (14) | −0.00261 (19) | 0.0552 (5) | |
O6 | 0.17240 (16) | 0.73789 (15) | 0.1245 (2) | 0.0708 (6) | |
C1 | 0.40595 (19) | 0.38621 (19) | 0.7774 (3) | 0.0489 (7) | |
C2 | 0.44923 (19) | 0.3960 (2) | 0.6551 (3) | 0.0535 (7) | |
H2 | 0.5159 | 0.3969 | 0.6689 | 0.064* | |
C3 | 0.39525 (17) | 0.4043 (2) | 0.5159 (3) | 0.0498 (7) | |
H3 | 0.4257 | 0.4115 | 0.4362 | 0.060* | |
C4 | 0.29485 (17) | 0.40231 (18) | 0.4904 (3) | 0.0431 (6) | |
C5 | 0.25296 (19) | 0.3930 (2) | 0.6119 (3) | 0.0500 (7) | |
H5 | 0.1863 | 0.3914 | 0.5976 | 0.060* | |
C6 | 0.30669 (19) | 0.3859 (2) | 0.7548 (3) | 0.0529 (7) | |
H6 | 0.2763 | 0.3810 | 0.8349 | 0.063* | |
C7 | 0.23594 (17) | 0.40769 (19) | 0.3372 (3) | 0.0432 (6) | |
C8 | 0.25006 (16) | 0.49320 (18) | 0.2385 (3) | 0.0417 (6) | |
C9 | 0.18639 (16) | 0.49020 (18) | 0.0908 (3) | 0.0403 (6) | |
C10 | 0.18742 (17) | 0.56427 (18) | −0.0231 (3) | 0.0441 (6) | |
C11 | 0.12689 (18) | 0.5588 (2) | −0.1573 (3) | 0.0483 (6) | |
H11 | 0.1296 | 0.6096 | −0.2289 | 0.058* | |
C12 | 0.06065 (17) | 0.4767 (2) | −0.1873 (3) | 0.0462 (6) | |
C13 | 0.05577 (17) | 0.40139 (19) | −0.0815 (3) | 0.0448 (6) | |
H13 | 0.0121 | 0.3462 | −0.1008 | 0.054* | |
C14 | 0.11834 (17) | 0.41057 (18) | 0.0554 (3) | 0.0412 (6) | |
C15 | 0.16718 (18) | 0.3364 (2) | 0.2905 (3) | 0.0496 (7) | |
H15 | 0.1595 | 0.2835 | 0.3568 | 0.060* | |
C16 | 0.4267 (2) | 0.3860 (3) | 1.0399 (3) | 0.0706 (9) | |
H16A | 0.3935 | 0.4518 | 1.0391 | 0.106* | |
H16B | 0.4772 | 0.3823 | 1.1263 | 0.106* | |
H16C | 0.3824 | 0.3292 | 1.0416 | 0.106* | |
C17 | −0.0563 (2) | 0.3907 (2) | −0.3728 (3) | 0.0623 (8) | |
H17A | −0.0173 | 0.3291 | −0.3727 | 0.094* | |
H17B | −0.0918 | 0.4036 | −0.4714 | 0.094* | |
H17C | −0.1002 | 0.3802 | −0.3075 | 0.094* | |
C18 | 0.2461 (2) | 0.7245 (2) | 0.0823 (3) | 0.0543 (7) | |
C19 | 0.3320 (2) | 0.7942 (2) | 0.1069 (4) | 0.0750 (10) | |
H19A | 0.3287 | 0.8400 | 0.0233 | 0.113* | |
H19B | 0.3891 | 0.7520 | 0.1186 | 0.113* | |
H19C | 0.3337 | 0.8354 | 0.1946 | 0.113* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0571 (12) | 0.0754 (14) | 0.0582 (12) | 0.0086 (10) | 0.0014 (10) | 0.0018 (10) |
O2 | 0.0502 (11) | 0.0498 (11) | 0.0642 (12) | −0.0153 (9) | −0.0011 (9) | 0.0073 (9) |
O3 | 0.0487 (11) | 0.0431 (10) | 0.0573 (11) | −0.0097 (8) | 0.0033 (9) | 0.0003 (8) |
O4 | 0.0613 (12) | 0.0660 (12) | 0.0482 (10) | −0.0073 (10) | −0.0010 (9) | −0.0054 (9) |
O5 | 0.0584 (12) | 0.0506 (11) | 0.0569 (11) | −0.0114 (9) | 0.0121 (9) | 0.0011 (9) |
O6 | 0.0667 (14) | 0.0524 (12) | 0.0938 (16) | 0.0037 (10) | 0.0178 (12) | −0.0104 (10) |
C1 | 0.0451 (15) | 0.0412 (14) | 0.0562 (16) | 0.0037 (12) | 0.0007 (13) | 0.0012 (12) |
C2 | 0.0360 (14) | 0.0598 (17) | 0.0639 (18) | 0.0006 (12) | 0.0082 (13) | 0.0043 (14) |
C3 | 0.0389 (15) | 0.0543 (16) | 0.0579 (16) | 0.0031 (12) | 0.0137 (13) | 0.0056 (13) |
C4 | 0.0407 (14) | 0.0363 (13) | 0.0526 (15) | 0.0006 (10) | 0.0099 (12) | 0.0036 (11) |
C5 | 0.0354 (14) | 0.0516 (16) | 0.0620 (17) | 0.0008 (12) | 0.0073 (12) | 0.0033 (13) |
C6 | 0.0469 (16) | 0.0551 (16) | 0.0584 (17) | −0.0008 (13) | 0.0148 (13) | 0.0046 (13) |
C7 | 0.0359 (13) | 0.0419 (14) | 0.0522 (15) | 0.0026 (11) | 0.0097 (11) | 0.0023 (11) |
C8 | 0.0343 (13) | 0.0368 (13) | 0.0548 (15) | 0.0012 (11) | 0.0110 (11) | −0.0019 (11) |
C9 | 0.0340 (13) | 0.0369 (13) | 0.0502 (14) | 0.0026 (10) | 0.0089 (11) | −0.0042 (11) |
C10 | 0.0422 (14) | 0.0389 (13) | 0.0530 (15) | −0.0046 (11) | 0.0139 (12) | −0.0026 (11) |
C11 | 0.0502 (15) | 0.0496 (15) | 0.0453 (14) | −0.0018 (12) | 0.0097 (12) | 0.0015 (12) |
C12 | 0.0443 (14) | 0.0480 (15) | 0.0459 (15) | 0.0064 (12) | 0.0084 (12) | −0.0095 (12) |
C13 | 0.0385 (14) | 0.0396 (13) | 0.0557 (15) | 0.0005 (11) | 0.0084 (12) | −0.0107 (12) |
C14 | 0.0404 (14) | 0.0334 (12) | 0.0510 (14) | 0.0029 (10) | 0.0121 (11) | 0.0004 (11) |
C15 | 0.0462 (16) | 0.0431 (14) | 0.0573 (16) | −0.0011 (12) | 0.0054 (13) | 0.0084 (12) |
C16 | 0.080 (2) | 0.077 (2) | 0.0516 (17) | 0.0027 (17) | 0.0051 (16) | 0.0032 (15) |
C17 | 0.0552 (18) | 0.0654 (19) | 0.0611 (17) | −0.0015 (14) | −0.0009 (14) | −0.0127 (14) |
C18 | 0.0589 (19) | 0.0414 (15) | 0.0598 (17) | 0.0042 (14) | 0.0053 (15) | 0.0091 (13) |
C19 | 0.071 (2) | 0.0523 (17) | 0.093 (2) | −0.0193 (16) | −0.0043 (18) | 0.0041 (16) |
O1—C1 | 1.361 (3) | C7—C8 | 1.458 (3) |
O1—C16 | 1.410 (3) | C8—C9 | 1.475 (3) |
O2—C8 | 1.223 (3) | C9—C14 | 1.393 (3) |
O3—C15 | 1.348 (3) | C9—C10 | 1.413 (3) |
O3—C14 | 1.374 (3) | C10—C11 | 1.359 (3) |
O4—C12 | 1.348 (3) | C11—C12 | 1.396 (3) |
O4—C17 | 1.433 (3) | C11—H11 | 0.9300 |
O5—C18 | 1.349 (3) | C12—C13 | 1.380 (4) |
O5—C10 | 1.398 (3) | C13—C14 | 1.394 (3) |
O6—C18 | 1.201 (3) | C13—H13 | 0.9300 |
C1—C6 | 1.384 (4) | C15—H15 | 0.9300 |
C1—C2 | 1.395 (4) | C16—H16A | 0.9600 |
C2—C3 | 1.359 (3) | C16—H16B | 0.9600 |
C2—H2 | 0.9300 | C16—H16C | 0.9600 |
C3—C4 | 1.399 (3) | C17—H17A | 0.9600 |
C3—H3 | 0.9300 | C17—H17B | 0.9600 |
C4—C5 | 1.376 (4) | C17—H17C | 0.9600 |
C4—C7 | 1.491 (3) | C18—C19 | 1.489 (4) |
C5—C6 | 1.386 (3) | C19—H19A | 0.9600 |
C5—H5 | 0.9300 | C19—H19B | 0.9600 |
C6—H6 | 0.9300 | C19—H19C | 0.9600 |
C7—C15 | 1.339 (3) | ||
C1—O1—C16 | 118.3 (2) | C10—C11—H11 | 120.1 |
C15—O3—C14 | 118.33 (19) | C12—C11—H11 | 120.1 |
C12—O4—C17 | 118.9 (2) | O4—C12—C13 | 124.7 (2) |
C18—O5—C10 | 116.7 (2) | O4—C12—C11 | 114.8 (2) |
O1—C1—C6 | 124.9 (3) | C13—C12—C11 | 120.5 (2) |
O1—C1—C2 | 116.4 (2) | C12—C13—C14 | 117.9 (2) |
C6—C1—C2 | 118.8 (2) | C12—C13—H13 | 121.0 |
C3—C2—C1 | 120.9 (2) | C14—C13—H13 | 121.0 |
C3—C2—H2 | 119.6 | O3—C14—C9 | 121.3 (2) |
C1—C2—H2 | 119.6 | O3—C14—C13 | 114.7 (2) |
C2—C3—C4 | 121.3 (3) | C9—C14—C13 | 124.0 (2) |
C2—C3—H3 | 119.4 | C7—C15—O3 | 126.1 (2) |
C4—C3—H3 | 119.4 | C7—C15—H15 | 117.0 |
C5—C4—C3 | 117.4 (2) | O3—C15—H15 | 117.0 |
C5—C4—C7 | 121.5 (2) | O1—C16—H16A | 109.5 |
C3—C4—C7 | 121.1 (2) | O1—C16—H16B | 109.5 |
C4—C5—C6 | 122.2 (2) | H16A—C16—H16B | 109.5 |
C4—C5—H5 | 118.9 | O1—C16—H16C | 109.5 |
C6—C5—H5 | 118.9 | H16A—C16—H16C | 109.5 |
C1—C6—C5 | 119.5 (3) | H16B—C16—H16C | 109.5 |
C1—C6—H6 | 120.3 | O4—C17—H17A | 109.5 |
C5—C6—H6 | 120.3 | O4—C17—H17B | 109.5 |
C15—C7—C8 | 119.2 (2) | H17A—C17—H17B | 109.5 |
C15—C7—C4 | 120.5 (2) | O4—C17—H17C | 109.5 |
C8—C7—C4 | 120.3 (2) | H17A—C17—H17C | 109.5 |
O2—C8—C7 | 122.0 (2) | H17B—C17—H17C | 109.5 |
O2—C8—C9 | 123.1 (2) | O6—C18—O5 | 121.8 (3) |
C7—C8—C9 | 114.9 (2) | O6—C18—C19 | 127.5 (3) |
C14—C9—C10 | 115.0 (2) | O5—C18—C19 | 110.6 (3) |
C14—C9—C8 | 120.2 (2) | C18—C19—H19A | 109.5 |
C10—C9—C8 | 124.9 (2) | C18—C19—H19B | 109.5 |
C11—C10—O5 | 117.9 (2) | H19A—C19—H19B | 109.5 |
C11—C10—C9 | 122.9 (2) | C18—C19—H19C | 109.5 |
O5—C10—C9 | 119.0 (2) | H19A—C19—H19C | 109.5 |
C10—C11—C12 | 119.8 (2) | H19B—C19—H19C | 109.5 |
C16—O1—C1—C6 | −10.1 (4) | C14—C9—C10—C11 | 0.0 (3) |
C16—O1—C1—C2 | 169.5 (2) | C8—C9—C10—C11 | −179.5 (2) |
O1—C1—C2—C3 | 179.9 (2) | C14—C9—C10—O5 | −174.3 (2) |
C6—C1—C2—C3 | −0.5 (4) | C8—C9—C10—O5 | 6.2 (3) |
C1—C2—C3—C4 | −0.6 (4) | O5—C10—C11—C12 | 173.8 (2) |
C2—C3—C4—C5 | 0.8 (4) | C9—C10—C11—C12 | −0.6 (4) |
C2—C3—C4—C7 | −177.8 (2) | C17—O4—C12—C13 | −9.8 (3) |
C3—C4—C5—C6 | 0.1 (4) | C17—O4—C12—C11 | 170.9 (2) |
C7—C4—C5—C6 | 178.8 (2) | C10—C11—C12—O4 | 179.7 (2) |
O1—C1—C6—C5 | −179.0 (2) | C10—C11—C12—C13 | 0.4 (4) |
C2—C1—C6—C5 | 1.4 (4) | O4—C12—C13—C14 | −178.9 (2) |
C4—C5—C6—C1 | −1.2 (4) | C11—C12—C13—C14 | 0.4 (3) |
C5—C4—C7—C15 | −50.3 (3) | C15—O3—C14—C9 | −1.4 (3) |
C3—C4—C7—C15 | 128.4 (3) | C15—O3—C14—C13 | 178.8 (2) |
C5—C4—C7—C8 | 127.3 (3) | C10—C9—C14—O3 | −178.9 (2) |
C3—C4—C7—C8 | −54.1 (3) | C8—C9—C14—O3 | 0.6 (3) |
C15—C7—C8—O2 | 177.2 (2) | C10—C9—C14—C13 | 0.9 (3) |
C4—C7—C8—O2 | −0.4 (4) | C8—C9—C14—C13 | −179.6 (2) |
C15—C7—C8—C9 | −1.6 (3) | C12—C13—C14—O3 | 178.7 (2) |
C4—C7—C8—C9 | −179.2 (2) | C12—C13—C14—C9 | −1.1 (3) |
O2—C8—C9—C14 | −177.9 (2) | C8—C7—C15—O3 | 1.0 (4) |
C7—C8—C9—C14 | 0.9 (3) | C4—C7—C15—O3 | 178.5 (2) |
O2—C8—C9—C10 | 1.5 (4) | C14—O3—C15—C7 | 0.6 (4) |
C7—C8—C9—C10 | −179.7 (2) | C10—O5—C18—O6 | −8.3 (4) |
C18—O5—C10—C11 | 106.5 (3) | C10—O5—C18—C19 | 174.2 (2) |
C18—O5—C10—C9 | −79.0 (3) |
Experimental details
Crystal data | |
Chemical formula | C19H16O6 |
Mr | 340.32 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 14.2159 (16), 12.7207 (15), 9.2200 (11) |
β (°) | 101.668 (2) |
V (Å3) | 1632.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.30 × 0.20 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.970, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11970, 3720, 2142 |
Rint | 0.075 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.064, 0.180, 1.03 |
No. of reflections | 3720 |
No. of parameters | 229 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.19 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 2001).
Genistein derivatives play an important role in organic chemistry (Kim et al., 2004; Li et al., 2006). In the genistein derived title compound, (I) (Fig. 1), the bond lengths and angles are within their normal ranges (Allen et al., 1987). The dihedral angle between the least-squares planes of the two benzene rings (C1—C6 and C9—C14) is 52.81 (9) °. The crystal packing for (I) is stabilized by van der Waals forces.