Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680705060X/bt2538sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680705060X/bt2538Isup2.hkl |
CCDC reference: 662942
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.002 Å
- R factor = 0.051
- wR factor = 0.132
- Data-to-parameter ratio = 18.4
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT230_ALERT_2_C Hirshfeld Test Diff for C7 - C9 .. 5.49 su PLAT371_ALERT_2_C Long C(sp2)-C(sp1) Bond C7 - C8 ... 1.43 Ang. PLAT371_ALERT_2_C Long C(sp2)-C(sp1) Bond C7 - C9 ... 1.43 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H5 .. N1 .. 2.65 Ang.
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 5 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The preparation of (3) was achieved by Knoevenagel condensation of 4,4-dimethylcyclohexa-2,5-dione (1) (Yaganita et al., 1951) with malonodinitrile (2). 10 mg β-alanine and 0.2 ml glacial acetic acid were added to a mixture of 0.49 g (4.0 mmol) 1 and 0.26 g (4.0 mmol) of freshly distilled 2 in 8 ml anhydrous ethanol. After stirring for several days (TLC monitoring), 40 ml dichloromethane were added and the reaction mixture filtered through a short silica gel column. The solvent was removed by rotary evaporation and the remaining solid purified by plate chromatography (silica gel, dichloromethane): 0.20 g (30%) 3, colourless needles, m.p. 94°C. Single crystals were obtained from dichloromethane.
1H-NMR: δ = 1.25 (s, 6H, CH3), 6.67 (d, J = 9.9 Hz, 2H, 1- and 5-H), 6.82 (d, J = 9.9 Hz, 2- and 4-H); 13C-NMR: δ = 26.6 (CH3), 39.8 (C6), 76.5 (C7), 112.9 (C≡N), 120.5 (C2,C4), 154.5 (C1,C5), 157.0 (C3); IR (KBr): ¯ν = 1972 (m), 2935 (m), 2219 (s), 1650 (s), 1641 (s), 1525 (s), 1474 (m), 924 (w), 825 (s), 690 (w) cm-1; UV (acetonitrile): λmax (log ε) = 322 nm (4.40); MS (EI, 70 eV): m/z = 170 (31) [M+], 156 (11), 155 (100), 143 (15), 128 (35), 115 (12), 105 (23), 101 (19), 91 (14); elemental analysis: C11H10N2 (170.23): calcd C 77.62, H 5.92, N 16.46; found C 77.31, H 5.94, N 16.40.
Methyl H atoms were identified in difference syntheses, idealized and then refined using rigid methyl groups (C—H 0.98 Å, H—C—H 109.5°) allowed to rotate but not tip. Other H atoms were included using a riding model with C—H 0.95 Å. U(H) values were fixed at n × U(eq) of the parent atom, with n = 1.5 for methyl H, 1.2 for other H.
In our studies of the preparation and properties of novel cross-conjugated π-electron systems (Hopf, 1984, 2001; Hopf et al., 2002), we needed the structure of the title compound 3 for comparison; see Fig. 1.
The molecular dimensions (Table 1) accord with expectation. The six-membered ring is planar (r.m.s. deviation 0.013 Å), with the dicyanomethylidene group bent out of the plane by up to 0.179 (3) Å for N2.
The packing involves chains of molecules parallel to (201), linked via the weak hydrogen bond H5···N1 (Table 2). This interaction might be better considered as an H···π interaction to the midpoint of C8≡N1, which is slightly more linear (H···midpoint 2.76 Å, angle 148°). The chains lie in planes parallel to 102 (Fig. 2).
For related literature, see: Hopf (1984, 2001); Hopf et al. (2002); Yanagita et al. (1951).
Data collection: XSCANS (Fait, 1991); cell refinement: XSCANS (Fait, 1991); data reduction: XSCANS (Fait, 1991); program(s) used to solve structure: SHELXS97 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: XP5 (Siemens, 1994); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
C11H10N2 | F(000) = 360 |
Mr = 170.21 | Dx = 1.159 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 7.8978 (8) Å | Cell parameters from 62 reflections |
b = 18.534 (2) Å | θ = 5–12.5° |
c = 6.8486 (6) Å | µ = 0.07 mm−1 |
β = 103.232 (8)° | T = 173 K |
V = 975.88 (17) Å3 | Block, colourless |
Z = 4 | 0.6 × 0.6 × 0.6 mm |
Siemens P4 diffractometer | Rint = 0.013 |
Radiation source: fine-focus sealed tube | θmax = 27.5°, θmin = 3.3° |
Graphite monochromator | h = −10→9 |
ω scans | k = −6→24 |
3180 measured reflections | l = 0→8 |
2226 independent reflections | 3 standard reflections every 247 reflections |
1716 reflections with I > 2σ(I) | intensity decay: none |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.051 | H-atom parameters constrained |
wR(F2) = 0.132 | w = 1/[σ2(Fo2) + (0.0892P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
2226 reflections | Δρmax = 0.50 e Å−3 |
121 parameters | Δρmin = −0.41 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.34 (3) |
C11H10N2 | V = 975.88 (17) Å3 |
Mr = 170.21 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.8978 (8) Å | µ = 0.07 mm−1 |
b = 18.534 (2) Å | T = 173 K |
c = 6.8486 (6) Å | 0.6 × 0.6 × 0.6 mm |
β = 103.232 (8)° |
Siemens P4 diffractometer | Rint = 0.013 |
3180 measured reflections | 3 standard reflections every 247 reflections |
2226 independent reflections | intensity decay: none |
1716 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.50 e Å−3 |
2226 reflections | Δρmin = −0.41 e Å−3 |
121 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane) - 4.0384 (0.0036) x + 0.2071 (0.0092) y + 6.5304 (0.0014) z = 0.0741 (0.0061) * 0.0103 (0.0009) C1 * 0.0083 (0.0008) C2 * -0.0187 (0.0008) C3 * 0.0093 (0.0009) C4 * 0.0093 (0.0010) C5 * -0.0185 (0.0009) C6 - 0.0826 (0.0017) C7 - 0.1204 (0.0022) C8 - 0.1269 (0.0022) C9 - 0.1396 (0.0028) N1 - 0.1789 (0.0026) N2 Rms deviation of fitted atoms = 0.0132 |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 1.01120 (16) | 0.68467 (7) | 0.5936 (2) | 0.0572 (4) | |
N2 | 0.68155 (18) | 0.86921 (6) | 0.37784 (19) | 0.0547 (4) | |
C1 | 0.46171 (16) | 0.56316 (6) | 0.28058 (18) | 0.0369 (3) | |
H1 | 0.4818 | 0.5128 | 0.2978 | 0.044* | |
C2 | 0.59169 (15) | 0.60762 (6) | 0.35924 (17) | 0.0343 (3) | |
H2 | 0.6999 | 0.5882 | 0.4293 | 0.041* | |
C3 | 0.57112 (15) | 0.68519 (6) | 0.33993 (16) | 0.0320 (3) | |
C4 | 0.40267 (16) | 0.71260 (6) | 0.23917 (18) | 0.0396 (3) | |
H4 | 0.3838 | 0.7632 | 0.2287 | 0.048* | |
C5 | 0.27336 (17) | 0.66755 (7) | 0.1606 (2) | 0.0460 (4) | |
H5 | 0.1648 | 0.6881 | 0.0958 | 0.055* | |
C6 | 0.28664 (15) | 0.58718 (7) | 0.1671 (2) | 0.0418 (3) | |
C7 | 0.70796 (15) | 0.73089 (6) | 0.41331 (16) | 0.0338 (3) | |
C8 | 0.87590 (16) | 0.70475 (7) | 0.51221 (18) | 0.0398 (3) | |
C9 | 0.69184 (17) | 0.80778 (7) | 0.39413 (18) | 0.0391 (3) | |
C10 | 0.2557 (2) | 0.55870 (7) | −0.0502 (2) | 0.0539 (4) | |
H10A | 0.1400 | 0.5735 | −0.1254 | 0.081* | |
H10B | 0.2634 | 0.5059 | −0.0484 | 0.081* | |
H10C | 0.3442 | 0.5786 | −0.1146 | 0.081* | |
C11 | 0.14710 (19) | 0.55525 (9) | 0.2676 (3) | 0.0624 (5) | |
H11A | 0.0315 | 0.5708 | 0.1938 | 0.094* | |
H11B | 0.1675 | 0.5723 | 0.4065 | 0.094* | |
H11C | 0.1537 | 0.5025 | 0.2663 | 0.094* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0466 (7) | 0.0505 (7) | 0.0686 (8) | −0.0086 (5) | 0.0015 (6) | 0.0017 (6) |
N2 | 0.0815 (9) | 0.0309 (6) | 0.0557 (7) | −0.0078 (5) | 0.0242 (6) | −0.0056 (5) |
C1 | 0.0433 (7) | 0.0250 (5) | 0.0409 (6) | 0.0024 (4) | 0.0068 (5) | 0.0015 (5) |
C2 | 0.0383 (6) | 0.0269 (6) | 0.0358 (6) | 0.0040 (4) | 0.0047 (5) | 0.0030 (4) |
C3 | 0.0422 (6) | 0.0260 (5) | 0.0280 (5) | 0.0003 (4) | 0.0086 (4) | −0.0009 (4) |
C4 | 0.0472 (7) | 0.0241 (5) | 0.0447 (6) | 0.0064 (5) | 0.0045 (5) | −0.0019 (5) |
C5 | 0.0408 (7) | 0.0318 (6) | 0.0593 (8) | 0.0091 (5) | −0.0013 (6) | −0.0033 (6) |
C6 | 0.0389 (7) | 0.0291 (6) | 0.0531 (7) | 0.0001 (5) | 0.0018 (5) | −0.0038 (5) |
C7 | 0.0451 (6) | 0.0281 (6) | 0.0292 (5) | −0.0028 (4) | 0.0103 (4) | −0.0011 (4) |
C8 | 0.0436 (7) | 0.0352 (6) | 0.0399 (6) | −0.0100 (5) | 0.0083 (5) | −0.0017 (5) |
C9 | 0.0529 (7) | 0.0314 (6) | 0.0350 (6) | −0.0066 (5) | 0.0146 (5) | −0.0045 (5) |
C10 | 0.0612 (9) | 0.0363 (7) | 0.0545 (8) | −0.0005 (6) | −0.0070 (7) | −0.0055 (6) |
C11 | 0.0453 (8) | 0.0536 (9) | 0.0890 (12) | −0.0061 (7) | 0.0170 (8) | −0.0039 (8) |
N1—C8 | 1.1481 (17) | C5—H5 | 0.9500 |
N2—C9 | 1.1451 (17) | C6—C11 | 1.544 (2) |
C1—C2 | 1.3303 (17) | C6—C10 | 1.5451 (19) |
C1—C6 | 1.4905 (17) | C7—C8 | 1.4288 (18) |
C1—H1 | 0.9500 | C7—C9 | 1.4341 (16) |
C2—C3 | 1.4495 (15) | C10—H10A | 0.9800 |
C2—H2 | 0.9500 | C10—H10B | 0.9800 |
C3—C7 | 1.3745 (16) | C10—H10C | 0.9800 |
C3—C4 | 1.4436 (16) | C11—H11A | 0.9800 |
C4—C5 | 1.3334 (18) | C11—H11B | 0.9800 |
C4—H4 | 0.9500 | C11—H11C | 0.9800 |
C5—C6 | 1.4933 (17) | ||
C2—C1—C6 | 124.33 (10) | C5—C6—C10 | 108.51 (11) |
C2—C1—H1 | 117.8 | C11—C6—C10 | 109.07 (12) |
C6—C1—H1 | 117.8 | C3—C7—C8 | 122.10 (10) |
C1—C2—C3 | 121.16 (10) | C3—C7—C9 | 122.20 (11) |
C1—C2—H2 | 119.4 | C8—C7—C9 | 115.70 (10) |
C3—C2—H2 | 119.4 | N1—C8—C7 | 178.94 (14) |
C7—C3—C4 | 121.29 (10) | N2—C9—C7 | 178.86 (14) |
C7—C3—C2 | 121.03 (10) | C6—C10—H10A | 109.5 |
C4—C3—C2 | 117.67 (10) | C6—C10—H10B | 109.5 |
C5—C4—C3 | 120.62 (11) | H10A—C10—H10B | 109.5 |
C5—C4—H4 | 119.7 | C6—C10—H10C | 109.5 |
C3—C4—H4 | 119.7 | H10A—C10—H10C | 109.5 |
C4—C5—C6 | 124.79 (11) | H10B—C10—H10C | 109.5 |
C4—C5—H5 | 117.6 | C6—C11—H11A | 109.5 |
C6—C5—H5 | 117.6 | C6—C11—H11B | 109.5 |
C1—C6—C5 | 111.34 (10) | H11A—C11—H11B | 109.5 |
C1—C6—C11 | 108.95 (12) | C6—C11—H11C | 109.5 |
C5—C6—C11 | 110.07 (11) | H11A—C11—H11C | 109.5 |
C1—C6—C10 | 108.86 (11) | H11B—C11—H11C | 109.5 |
C6—C1—C2—C3 | 0.20 (19) | C2—C1—C6—C10 | 117.14 (14) |
C1—C2—C3—C7 | −176.99 (11) | C4—C5—C6—C1 | 2.35 (19) |
C1—C2—C3—C4 | 2.36 (16) | C4—C5—C6—C11 | 123.28 (15) |
C7—C3—C4—C5 | 176.90 (12) | C4—C5—C6—C10 | −117.44 (15) |
C2—C3—C4—C5 | −2.44 (17) | C4—C3—C7—C8 | −179.56 (11) |
C3—C4—C5—C6 | 0.0 (2) | C2—C3—C7—C8 | −0.24 (16) |
C2—C1—C6—C5 | −2.44 (18) | C4—C3—C7—C9 | −0.09 (16) |
C2—C1—C6—C11 | −124.02 (14) | C2—C3—C7—C9 | 179.23 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···N1i | 0.95 | 2.65 | 3.4007 (17) | 136 |
Symmetry code: (i) x−1, −y+3/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C11H10N2 |
Mr | 170.21 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 7.8978 (8), 18.534 (2), 6.8486 (6) |
β (°) | 103.232 (8) |
V (Å3) | 975.88 (17) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.6 × 0.6 × 0.6 |
Data collection | |
Diffractometer | Siemens P4 |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3180, 2226, 1716 |
Rint | 0.013 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.132, 1.05 |
No. of reflections | 2226 |
No. of parameters | 121 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.50, −0.41 |
Computer programs: XSCANS (Fait, 1991), SHELXS97 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), XP5 (Siemens, 1994).
C1—C2 | 1.3303 (17) | C3—C4 | 1.4436 (16) |
C1—C6 | 1.4905 (17) | C4—C5 | 1.3334 (18) |
C2—C3 | 1.4495 (15) | C5—C6 | 1.4933 (17) |
C3—C7 | 1.3745 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···N1i | 0.95 | 2.65 | 3.4007 (17) | 136.2 |
Symmetry code: (i) x−1, −y+3/2, z−1/2. |
In our studies of the preparation and properties of novel cross-conjugated π-electron systems (Hopf, 1984, 2001; Hopf et al., 2002), we needed the structure of the title compound 3 for comparison; see Fig. 1.
The molecular dimensions (Table 1) accord with expectation. The six-membered ring is planar (r.m.s. deviation 0.013 Å), with the dicyanomethylidene group bent out of the plane by up to 0.179 (3) Å for N2.
The packing involves chains of molecules parallel to (201), linked via the weak hydrogen bond H5···N1 (Table 2). This interaction might be better considered as an H···π interaction to the midpoint of C8≡N1, which is slightly more linear (H···midpoint 2.76 Å, angle 148°). The chains lie in planes parallel to 102 (Fig. 2).