Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807047794/fl2166sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807047794/fl2166Isup2.hkl |
CCDC reference: 667304
Key indicators
- Single-crystal X-ray study
- T = 296 K
- Mean (C-C) = 0.002 Å
- R factor = 0.041
- wR factor = 0.115
- Data-to-parameter ratio = 13.5
checkCIF/PLATON results
No syntax errors found
Alert level A PLAT707_ALERT_1_A D...A Calc 4.7419(14), Rep 2.56(4), Dev.. 1558.50 Sigma O2 -O1 1.555 1.555 PLAT707_ALERT_1_A D...A Calc 10.4392(15), Rep 2.65(4), Dev.. 5192.80 Sigma O3 -O2 1.555 4.466 PLAT725_ALERT_1_A D-H Calc 6.55000, Rep 0.82000 Dev... 5.73 Ang. O3 -H1 1.555 1.555 PLAT726_ALERT_1_A H...A Calc 5.40000, Rep 1.83900 Dev... 3.56 Ang. H2A -O1 1.555 1.555 PLAT726_ALERT_1_A H...A Calc 3.89000, Rep 1.92200 Dev... 1.97 Ang. H1 -O2 1.555 4.466 PLAT728_ALERT_1_A D-H..A Calc 34.00, Rep 146.23 Dev... 112.23 Deg. O2 -H2A -O1 1.555 1.555 1.555 PLAT728_ALERT_1_A D-H..A Calc 176.00, Rep 147.77 Dev... 28.23 Deg. O3 -H1 -O2 1.555 1.555 4.466 PLAT737_ALERT_1_A D...A Calc 4.7419(14), Rep 2.56(4) ...... 9.90 su-Ra O2 -O1 1.555 1.555 PLAT737_ALERT_1_A D...A Calc 10.4392(15), Rep 2.65(4) ...... 9.90 su-Ra O3 -O2 1.555 4.466
Alert level C PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
9 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 10 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The title compound was synthesized by refluxing 0.11 g (0.75 mmol) of 3,4-Pyridinedicarboxylic anhydride and 0.19 g (1.72 mmol) of resorcinol in 15:1 Glacial Acetic Acid:Water for 30 minutes. Added 250.7 µL of con. H2SO4 and 10 ml of water. Continued relux overnight. Allowed the solution to cool. Suitable crystals of the title compound were found on the bottom.
All non-hydrogen atoms were refined using anisotropic thermal parameters. All hydrogen atoms were included at idealized positions and not refined.
The title compound, (I, Fig. 1), was formed in a reaction mixture containing resorcinol, 3,4-pyridine dicarboxlyic acid anhydride, acetic acid and sulfuric acid where the original intent was to prepare a fluoroscein derivative containing pyridine for use as a chelating ligand which would allow for detection of metal ions at very low concentrations. The title compound is currently being used as a starting material for synthesis of new chelating ligands. There have been several derivatives of resorcinol published in the literature (Fronczek et al., 1987; Kokila et al., 1992; Liebich, 1979; Li et al., 2005; van Rooyen & Breytenbach, 1988). The compound most similiar to (I) (Kokila et al., 1992) has two acetyl groups found in the 4 and 6 positions. However, it differs from (I) in that it has two intramolecular O—H···O hydrogen bonds and no intermolecular interactions. In (I), in addition to the O3 ··· O4 intramolecular H-bond there is an intermolecular H-bod between O2 and O3 that links the molecules inttoo sheets which can be seen by viewing the unit cell down the 010 face. The distance between the sheets is 3.049 Å at its closest and 3.262 Å at its fartherest.
For related literature, see: Fronczek et al. (1987); Kokila et al. (1992); Liebich (1979); Li et al. (2005); van Rooyen & Breytenbach (1988).
Data collection: APEX2 (Bruker, 2006); cell refinement: APEX2 (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXTL (Bruker, 2006); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Bruker, 2006).
C8H8O3 | F(000) = 320 |
Mr = 152.14 | Dx = 1.417 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3391 reflections |
a = 7.1325 (3) Å | θ = 2.9–26.7° |
b = 13.7067 (5) Å | µ = 0.11 mm−1 |
c = 7.2998 (3) Å | T = 296 K |
β = 92.369 (2)° | Block, red |
V = 713.04 (5) Å3 | 0.50 × 0.32 × 0.24 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 1394 independent reflections |
Radiation source: fine-focus sealed tube | 1112 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.059 |
φ and ω scans | θmax = 26.0°, θmin = 2.9° |
Absorption correction: numerical (SADABS; Bruker, 2006) | h = −8→8 |
Tmin = 0.948, Tmax = 0.974 | k = −16→16 |
11606 measured reflections | l = −8→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.115 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0585P)2 + 0.1744P] where P = (Fo2 + 2Fc2)/3 |
1394 reflections | (Δ/σ)max < 0.001 |
103 parameters | Δρmax = 0.34 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C8H8O3 | V = 713.04 (5) Å3 |
Mr = 152.14 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.1325 (3) Å | µ = 0.11 mm−1 |
b = 13.7067 (5) Å | T = 296 K |
c = 7.2998 (3) Å | 0.50 × 0.32 × 0.24 mm |
β = 92.369 (2)° |
Bruker APEXII CCD area-detector diffractometer | 1394 independent reflections |
Absorption correction: numerical (SADABS; Bruker, 2006) | 1112 reflections with I > 2σ(I) |
Tmin = 0.948, Tmax = 0.974 | Rint = 0.059 |
11606 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.115 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.34 e Å−3 |
1394 reflections | Δρmin = −0.21 e Å−3 |
103 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C8 | 1.3101 (2) | 0.43113 (11) | 0.6235 (2) | 0.0320 (4) | |
H8A | 1.4239 | 0.4138 | 0.5657 | 0.048* | |
H8B | 1.3391 | 0.4725 | 0.7270 | 0.048* | |
H8C | 1.2285 | 0.4652 | 0.5374 | 0.048* | |
C7 | 1.2146 (2) | 0.34057 (10) | 0.68663 (18) | 0.0249 (3) | |
C4 | 1.03441 (18) | 0.34595 (9) | 0.77170 (17) | 0.0212 (3) | |
C3 | 0.94218 (19) | 0.26014 (9) | 0.82921 (17) | 0.0214 (3) | |
C2 | 0.77058 (19) | 0.26558 (10) | 0.91087 (17) | 0.0226 (3) | |
H2 | 0.7107 | 0.2090 | 0.9473 | 0.027* | |
C1 | 0.68871 (19) | 0.35572 (9) | 0.93794 (18) | 0.0235 (3) | |
C6 | 0.7743 (2) | 0.44146 (10) | 0.87870 (19) | 0.0259 (3) | |
H6 | 0.7165 | 0.5016 | 0.8941 | 0.031* | |
C5 | 0.94371 (19) | 0.43583 (9) | 0.79787 (17) | 0.0239 (3) | |
H5 | 1.0005 | 0.4929 | 0.7592 | 0.029* | |
O3 | 1.29189 (14) | 0.26013 (7) | 0.66509 (14) | 0.0320 (3) | |
O2 | 1.01829 (14) | 0.17102 (7) | 0.80826 (13) | 0.0280 (3) | |
H2A | 1.1171 | 0.1762 | 0.7555 | 0.042* | |
O1 | 0.52510 (14) | 0.36696 (7) | 1.02242 (15) | 0.0320 (3) | |
H1 | 0.4859 | 0.3134 | 1.0531 | 0.048* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C8 | 0.0231 (8) | 0.0356 (8) | 0.0378 (8) | −0.0037 (6) | 0.0075 (6) | 0.0033 (6) |
C7 | 0.0216 (8) | 0.0291 (8) | 0.0240 (7) | 0.0015 (6) | 0.0018 (5) | −0.0012 (5) |
C4 | 0.0196 (8) | 0.0216 (7) | 0.0224 (7) | −0.0007 (5) | 0.0018 (5) | 0.0002 (5) |
C3 | 0.0234 (7) | 0.0196 (7) | 0.0212 (6) | 0.0027 (5) | 0.0003 (5) | −0.0014 (5) |
C2 | 0.0238 (8) | 0.0201 (7) | 0.0242 (7) | −0.0032 (5) | 0.0025 (5) | 0.0014 (5) |
C1 | 0.0202 (7) | 0.0269 (7) | 0.0236 (7) | 0.0009 (5) | 0.0034 (5) | −0.0011 (5) |
C6 | 0.0248 (8) | 0.0201 (7) | 0.0330 (7) | 0.0037 (5) | 0.0035 (6) | −0.0005 (6) |
C5 | 0.0246 (8) | 0.0192 (7) | 0.0280 (7) | −0.0017 (5) | 0.0020 (5) | 0.0010 (5) |
O3 | 0.0270 (6) | 0.0319 (6) | 0.0377 (6) | 0.0052 (4) | 0.0101 (4) | −0.0016 (4) |
O2 | 0.0295 (6) | 0.0200 (5) | 0.0352 (6) | 0.0038 (4) | 0.0091 (4) | −0.0004 (4) |
O1 | 0.0258 (6) | 0.0273 (6) | 0.0440 (6) | 0.0021 (4) | 0.0158 (5) | 0.0019 (5) |
C8—C7 | 1.4976 (19) | C2—C1 | 1.3842 (18) |
C8—H8A | 0.9600 | C2—H2 | 0.9300 |
C8—H8B | 0.9600 | C1—O1 | 1.3510 (17) |
C8—H8C | 0.9600 | C1—C6 | 1.4008 (19) |
C7—O3 | 1.2455 (17) | C6—C5 | 1.369 (2) |
C7—C4 | 1.4522 (19) | C6—H6 | 0.9300 |
C4—C5 | 1.4081 (18) | C5—H5 | 0.9300 |
C4—C3 | 1.4196 (18) | O2—H2A | 0.8200 |
C3—O2 | 1.3480 (15) | O1—H1 | 0.8200 |
C3—C2 | 1.3853 (19) | ||
C7—C8—H8A | 109.5 | C1—C2—C3 | 119.66 (12) |
C7—C8—H8B | 109.5 | C1—C2—H2 | 120.2 |
H8A—C8—H8B | 109.5 | C3—C2—H2 | 120.2 |
C7—C8—H8C | 109.5 | O1—C1—C2 | 122.98 (12) |
H8A—C8—H8C | 109.5 | O1—C1—C6 | 116.15 (11) |
H8B—C8—H8C | 109.5 | C2—C1—C6 | 120.87 (13) |
O3—C7—C4 | 120.21 (12) | C5—C6—C1 | 119.30 (12) |
O3—C7—C8 | 119.04 (13) | C5—C6—H6 | 120.4 |
C4—C7—C8 | 120.75 (12) | C1—C6—H6 | 120.4 |
C5—C4—C3 | 117.62 (12) | C6—C5—C4 | 121.77 (12) |
C5—C4—C7 | 121.47 (12) | C6—C5—H5 | 119.1 |
C3—C4—C7 | 120.90 (12) | C4—C5—H5 | 119.1 |
O2—C3—C2 | 117.69 (12) | C3—O2—H2A | 109.5 |
O2—C3—C4 | 121.57 (12) | C1—O1—H1 | 109.5 |
C2—C3—C4 | 120.74 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1 | 0.82 | 1.84 | 2.56 (4) | 146 |
O3—H1···O2i | 0.82 | 1.92 | 2.65 (4) | 148 |
Symmetry code: (i) x−1, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C8H8O3 |
Mr | 152.14 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 7.1325 (3), 13.7067 (5), 7.2998 (3) |
β (°) | 92.369 (2) |
V (Å3) | 713.04 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.50 × 0.32 × 0.24 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Numerical (SADABS; Bruker, 2006) |
Tmin, Tmax | 0.948, 0.974 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11606, 1394, 1112 |
Rint | 0.059 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.115, 1.06 |
No. of reflections | 1394 |
No. of parameters | 103 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.21 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SHELXTL (Bruker, 2006), SHELXL97 (Sheldrick, 1997), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O1 | 0.820 | 1.839 | 2.56 (4) | 146.23 |
O3—H1···O2i | 0.820 | 1.922 | 2.65 (4) | 147.77 |
Symmetry code: (i) x−1, −y+1/2, z+1/2. |
The title compound, (I, Fig. 1), was formed in a reaction mixture containing resorcinol, 3,4-pyridine dicarboxlyic acid anhydride, acetic acid and sulfuric acid where the original intent was to prepare a fluoroscein derivative containing pyridine for use as a chelating ligand which would allow for detection of metal ions at very low concentrations. The title compound is currently being used as a starting material for synthesis of new chelating ligands. There have been several derivatives of resorcinol published in the literature (Fronczek et al., 1987; Kokila et al., 1992; Liebich, 1979; Li et al., 2005; van Rooyen & Breytenbach, 1988). The compound most similiar to (I) (Kokila et al., 1992) has two acetyl groups found in the 4 and 6 positions. However, it differs from (I) in that it has two intramolecular O—H···O hydrogen bonds and no intermolecular interactions. In (I), in addition to the O3 ··· O4 intramolecular H-bond there is an intermolecular H-bod between O2 and O3 that links the molecules inttoo sheets which can be seen by viewing the unit cell down the 010 face. The distance between the sheets is 3.049 Å at its closest and 3.262 Å at its fartherest.