Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807047952/fl2168sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807047952/fl2168Isup2.hkl |
CCDC reference: 669134
Key indicators
- Single-crystal X-ray study
- T = 130 K
- Mean (C-C) = 0.003 Å
- R factor = 0.036
- wR factor = 0.087
- Data-to-parameter ratio = 12.4
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT230_ALERT_2_B Hirshfeld Test Diff for O24 - C12 .. 7.43 su
Alert level C PLAT230_ALERT_2_C Hirshfeld Test Diff for O2 - C25 .. 5.39 su PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C2A - C21A ... 1.53 Ang. PLAT431_ALERT_2_C Short Inter HL..A Contact Cl4A .. O11A .. 3.13 Ang. PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 1 C23 H27 N2 O4
Alert level G REFLT03_ALERT_4_G WARNING: Large fraction of Friedel related reflns may be needed to determine absolute structure From the CIF: _diffrn_reflns_theta_max 27.51 From the CIF: _reflns_number_total 4923 Count of symmetry unique reflns 3319 Completeness (_total/calc) 148.33% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1604 Fraction of Friedel pairs measured 0.483 Are heavy atom types Z>Si present yes PLAT791_ALERT_1_G Confirm the Absolute Configuration of N19 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C7 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C8 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C12 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C13 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C14 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C16 = . S PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 4 ALERT level C = Check and explain 9 ALERT level G = General alerts; check 7 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 4 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The title compound (I) was synthesized by heating 1 mmol quantities of brucine tetrahydrate and 4,5-dichlorophthalic acid in 50 ml of methanol for 10 min under reflux. After concentration to ca. 30 ml, partial room-temperature evaporation of the hot-filtered solution gave colourless prisms (m.p. 541–543 K).
Hydrogen atoms potentially involved in hydrogen-bonding interactions were located by difference methods and their positional and isotropic displacement parameters were refined. Other H atoms were included in the refinement at calculated positions [C—H(aromatic) = 0.93 Å; C—H(aliphatic), 0.96–0.98 Å] and treated as riding models with Uiso(H) = 1.2Ueq (C). The absolute configuration determined for the parent strychnidin-10-one molecule (Peerdeman, 1956) was invoked and it agreed with that indicated byt the Flack parameter (Flack, 1983).
Brucine (2,3-dimethoxystrychnidin-10-one) has shown a hit-or-miss ability to form crystalline salts with both chiral and achiral aromatic carboxylic acids. However, Oshikawa et al. (2002) observed the selectivity of brucine for meta-substituted benzoic acids and reported the structure of brucinium 3-nitrobenzoate. Since then, the brucinium salts of a number of other meta-substituted benzoic acids have been characterized, including 3,5-dinitrobenzoic acid (three solvent pseudopolymorphs) (Bialońska & Ciunik, 2006), 3-nitrophthalic acid (Smith et al., 2005), 5-nitrosalicylic, 3,5-dinitrosalicylic and 5-sulfosalicylic acids (Smith, et al., 2006a), and isophthalic acid (Smith, et al., 2006b). We also obtained good crystals of the title compound from the 1:1 stoichiometric reaction of 4,5-dichlorophthalic acid with brucine in methanol and its structure is reported here.
In (I), protonation occurs as expected at N19 of the brucine cage (Fig. 1), the invoked Peerdeman (1956) absolute configuration giving the overall Cahn-Ingold-Prelog stereochemistry of the cation molecule as C7(S), C8(S), C12(S), C13(R), C14(R), C16(S), N19(S). The cations and anions give a single N–H···Ocarboxylate hydrogen-bonding association resulting in dimers which are extended via weak head-to-tail C–H···Omethoxy associations (Table 1) into chains which form down the 21 screw axis of the unit cell (Fig. 2). The brucinium cations give a variant of the previously described undulating sheet host substructure which is present in a significant number of brucine compounds (Gould & Walkinshaw, 1984; Bialońska & Ciunik, 2004a, 2004b; Smith, et al., 2006a).
The hydrogen 4,5-dichlorophthalate anion is essentially planar [torsion angles C2A–C1A–C11A–O11A, -177.8 (2) °: C1A–C2A–C21A–O22A, -163.9 (2) °], having a strong intramolecular hydrogen bond [2.441 (3) Å] between the carboxylic acid and the ortho-related carboxylate group. This is similar to that found in other acid salts of 4,5-dichlorophthalic acid (Mallinson et al., 2003; Bozkurt et al., 2006).
Absolute configuration: (Peerdeman, 1956; Flack, 1983). Similar structures: (Oshikawa et al., 2002; Smith et al., 2005, 2006a,b; Bialońska & Ciunik, 2004a,b, 2006; Gould & Walkinshaw, 1984; Mallinson et al., 2003; Bozkurt et al., 2006).
For related literature, see: Białońska & Ciunik (2004a, 2006).
Data collection: SMART (Bruker, 2000); cell refinement: SMART (Bruker, 2000); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: PLATON (Spek, 2003).
C23H27N2O4+·C8H3Cl2O4− | F(000) = 656 |
Mr = 629.47 | Dx = 1.505 Mg m−3 |
Monoclinic, P21 | Melting point = 541–543 K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5085 (10) Å | Cell parameters from 3573 reflections |
b = 12.9946 (13) Å | θ = 2.4–27.5° |
c = 11.5893 (12) Å | µ = 0.29 mm−1 |
β = 104.110 (2)° | T = 130 K |
V = 1388.8 (2) Å3 | Prism, colourless |
Z = 2 | 0.45 × 0.20 × 0.15 mm |
Bruker SMART CCD area-detector diffractometer | 4923 independent reflections |
Radiation source: sealed tube | 4747 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
π and ω scans | θmax = 27.5°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −11→12 |
Tmin = 0.86, Tmax = 0.96 | k = −13→16 |
8761 measured reflections | l = −14→14 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0482P)2 + 0.1824P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
4923 reflections | Δρmax = 0.28 e Å−3 |
396 parameters | Δρmin = −0.27 e Å−3 |
1 restraint | Absolute structure: Flack (1983) |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.07 (5) |
C23H27N2O4+·C8H3Cl2O4− | V = 1388.8 (2) Å3 |
Mr = 629.47 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 9.5085 (10) Å | µ = 0.29 mm−1 |
b = 12.9946 (13) Å | T = 130 K |
c = 11.5893 (12) Å | 0.45 × 0.20 × 0.15 mm |
β = 104.110 (2)° |
Bruker SMART CCD area-detector diffractometer | 4923 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 4747 reflections with I > 2σ(I) |
Tmin = 0.86, Tmax = 0.96 | Rint = 0.024 |
8761 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.087 | Δρmax = 0.28 e Å−3 |
S = 1.04 | Δρmin = −0.27 e Å−3 |
4923 reflections | Absolute structure: Flack (1983) |
396 parameters | Absolute structure parameter: 0.07 (5) |
1 restraint |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O2 | 1.54757 (16) | 0.49720 (12) | 0.37798 (14) | 0.0206 (5) | |
O3 | 1.79347 (15) | 0.59526 (13) | 0.45159 (14) | 0.0207 (5) | |
O24 | 1.32796 (17) | 1.17615 (14) | 0.26352 (15) | 0.0245 (5) | |
O25 | 1.75444 (16) | 0.97830 (15) | 0.38024 (15) | 0.0270 (5) | |
N9 | 1.52499 (19) | 0.92448 (15) | 0.37457 (16) | 0.0169 (5) | |
N19 | 1.03164 (19) | 0.86493 (16) | 0.25567 (17) | 0.0185 (6) | |
C1 | 1.4104 (2) | 0.65792 (19) | 0.34534 (19) | 0.0173 (6) | |
C2 | 1.5393 (2) | 0.60267 (19) | 0.37881 (18) | 0.0168 (6) | |
C3 | 1.6727 (2) | 0.65612 (18) | 0.41809 (18) | 0.0163 (6) | |
C4 | 1.6775 (2) | 0.76311 (19) | 0.41932 (19) | 0.0177 (7) | |
C5 | 1.5471 (2) | 0.81670 (18) | 0.38124 (19) | 0.0169 (6) | |
C6 | 1.4158 (2) | 0.76555 (18) | 0.34721 (18) | 0.0155 (6) | |
C7 | 1.2924 (2) | 0.84016 (19) | 0.33033 (18) | 0.0160 (6) | |
C8 | 1.3679 (2) | 0.94622 (17) | 0.32578 (19) | 0.0151 (6) | |
C10 | 1.6246 (2) | 0.99634 (18) | 0.3600 (2) | 0.0196 (7) | |
C11 | 1.5609 (2) | 1.10200 (19) | 0.3217 (2) | 0.0211 (7) | |
C12 | 1.4182 (2) | 1.10386 (19) | 0.2230 (2) | 0.0194 (7) | |
C13 | 1.3554 (2) | 0.99410 (17) | 0.20308 (19) | 0.0169 (6) | |
C14 | 1.2047 (2) | 0.9798 (2) | 0.11891 (19) | 0.0197 (7) | |
C15 | 1.1814 (2) | 0.86306 (19) | 0.1049 (2) | 0.0207 (7) | |
C16 | 1.1650 (2) | 0.81878 (18) | 0.2216 (2) | 0.0177 (6) | |
C17 | 1.2167 (2) | 0.83530 (19) | 0.43341 (19) | 0.0176 (6) | |
C18 | 1.0774 (2) | 0.89449 (19) | 0.38545 (19) | 0.0187 (6) | |
C20 | 0.9651 (2) | 0.95409 (19) | 0.1787 (2) | 0.0223 (7) | |
C21 | 1.0808 (2) | 1.0274 (2) | 0.1633 (2) | 0.0205 (7) | |
C22 | 1.0756 (3) | 1.1263 (2) | 0.1875 (2) | 0.0236 (7) | |
C23 | 1.1939 (3) | 1.2006 (2) | 0.1784 (2) | 0.0282 (8) | |
C25 | 1.4138 (2) | 0.4424 (2) | 0.3378 (2) | 0.0218 (7) | |
C26 | 1.9270 (2) | 0.6490 (2) | 0.5014 (2) | 0.0236 (7) | |
Cl4A | 0.37189 (6) | 0.34813 (5) | −0.00859 (6) | 0.0289 (2) | |
Cl5A | 0.34137 (6) | 0.59206 (5) | −0.00357 (5) | 0.0273 (2) | |
O11A | 0.84305 (18) | 0.71344 (14) | 0.19623 (16) | 0.0284 (6) | |
O12A | 1.00497 (17) | 0.58983 (16) | 0.25332 (17) | 0.0318 (6) | |
O21A | 1.0085 (2) | 0.40751 (18) | 0.3045 (2) | 0.0428 (7) | |
O22A | 0.8526 (2) | 0.28055 (15) | 0.28601 (18) | 0.0345 (6) | |
C1A | 0.7527 (2) | 0.54385 (19) | 0.17814 (19) | 0.0185 (6) | |
C2A | 0.7584 (2) | 0.43600 (19) | 0.1910 (2) | 0.0191 (7) | |
C3A | 0.6375 (2) | 0.37818 (18) | 0.1349 (2) | 0.0192 (7) | |
C4A | 0.5121 (2) | 0.42411 (19) | 0.0697 (2) | 0.0189 (7) | |
C5A | 0.5011 (2) | 0.5306 (2) | 0.0667 (2) | 0.0179 (6) | |
C6A | 0.6206 (2) | 0.58916 (19) | 0.12083 (19) | 0.0177 (6) | |
C11A | 0.8761 (2) | 0.6212 (2) | 0.2133 (2) | 0.0222 (7) | |
C21A | 0.8802 (3) | 0.3690 (2) | 0.2654 (2) | 0.0261 (8) | |
H1 | 1.32200 | 0.62380 | 0.32210 | 0.0210* | |
H4 | 1.76500 | 0.79800 | 0.44480 | 0.0210* | |
H8 | 1.33450 | 0.99550 | 0.37730 | 0.0180* | |
H11A | 1.63290 | 1.14170 | 0.29450 | 0.0250* | |
H11B | 1.54380 | 1.13660 | 0.39120 | 0.0250* | |
H12 | 1.43830 | 1.12910 | 0.14900 | 0.0230* | |
H13 | 1.42240 | 0.95520 | 0.16740 | 0.0200* | |
H14 | 1.20490 | 1.00960 | 0.04130 | 0.0240* | |
H15A | 1.09510 | 0.84890 | 0.04250 | 0.0250* | |
H15B | 1.26360 | 0.83160 | 0.08280 | 0.0250* | |
H16 | 1.15170 | 0.74420 | 0.21260 | 0.0210* | |
H17A | 1.19680 | 0.76470 | 0.45160 | 0.0210* | |
H17B | 1.27520 | 0.86770 | 0.50440 | 0.0210* | |
H18A | 1.00410 | 0.87500 | 0.42660 | 0.0220* | |
H18B | 1.09410 | 0.96800 | 0.39430 | 0.0220* | |
H19 | 0.966 (3) | 0.814 (2) | 0.244 (2) | 0.015 (6)* | |
H20A | 0.91220 | 0.92890 | 0.10150 | 0.0270* | |
H20B | 0.89720 | 0.98950 | 0.21520 | 0.0270* | |
H22 | 0.99540 | 1.15120 | 0.21120 | 0.0280* | |
H23A | 1.20910 | 1.19800 | 0.09870 | 0.0340* | |
H23B | 1.16440 | 1.26990 | 0.19260 | 0.0340* | |
H25A | 1.43260 | 0.36980 | 0.34120 | 0.0330* | |
H25B | 1.36890 | 0.46190 | 0.25740 | 0.0330* | |
H25C | 1.35020 | 0.45890 | 0.38800 | 0.0330* | |
H26A | 2.00510 | 0.60040 | 0.52210 | 0.0350* | |
H26B | 1.91870 | 0.68570 | 0.57130 | 0.0350* | |
H26C | 1.94620 | 0.69680 | 0.44390 | 0.0350* | |
H3A | 0.64130 | 0.30690 | 0.14160 | 0.0230* | |
H6A | 0.61280 | 0.66050 | 0.11910 | 0.0210* | |
H21A | 1.015 (4) | 0.469 (4) | 0.283 (3) | 0.063 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O2 | 0.0162 (7) | 0.0148 (9) | 0.0297 (9) | 0.0011 (6) | 0.0036 (6) | −0.0004 (7) |
O3 | 0.0136 (7) | 0.0170 (9) | 0.0295 (8) | 0.0008 (7) | 0.0017 (6) | −0.0017 (7) |
O24 | 0.0223 (8) | 0.0174 (9) | 0.0337 (9) | −0.0020 (7) | 0.0069 (7) | 0.0016 (7) |
O25 | 0.0138 (8) | 0.0241 (10) | 0.0428 (9) | 0.0025 (7) | 0.0063 (6) | −0.0014 (9) |
N9 | 0.0147 (9) | 0.0170 (10) | 0.0195 (9) | 0.0005 (7) | 0.0049 (7) | 0.0006 (8) |
N19 | 0.0119 (9) | 0.0186 (11) | 0.0236 (10) | 0.0010 (8) | 0.0017 (7) | −0.0007 (8) |
C1 | 0.0135 (10) | 0.0191 (12) | 0.0188 (11) | 0.0038 (8) | 0.0031 (8) | 0.0019 (9) |
C2 | 0.0187 (10) | 0.0168 (12) | 0.0155 (10) | 0.0003 (9) | 0.0055 (8) | −0.0013 (9) |
C3 | 0.0163 (10) | 0.0172 (12) | 0.0153 (10) | −0.0009 (8) | 0.0037 (8) | −0.0021 (9) |
C4 | 0.0123 (10) | 0.0211 (13) | 0.0196 (11) | 0.0025 (9) | 0.0037 (8) | −0.0016 (10) |
C5 | 0.0177 (10) | 0.0172 (12) | 0.0171 (11) | 0.0015 (8) | 0.0070 (8) | 0.0006 (9) |
C6 | 0.0133 (10) | 0.0180 (12) | 0.0146 (10) | 0.0004 (8) | 0.0020 (8) | −0.0005 (9) |
C7 | 0.0152 (10) | 0.0144 (11) | 0.0177 (10) | 0.0019 (9) | 0.0029 (8) | −0.0007 (9) |
C8 | 0.0117 (10) | 0.0150 (12) | 0.0184 (10) | 0.0004 (8) | 0.0031 (7) | 0.0007 (8) |
C10 | 0.0211 (11) | 0.0187 (13) | 0.0204 (11) | 0.0023 (9) | 0.0078 (8) | 0.0031 (9) |
C11 | 0.0201 (11) | 0.0167 (13) | 0.0274 (12) | 0.0069 (9) | 0.0073 (9) | 0.0012 (10) |
C12 | 0.0209 (11) | 0.0178 (12) | 0.0214 (11) | 0.0010 (9) | 0.0086 (8) | −0.0030 (10) |
C13 | 0.0162 (10) | 0.0140 (12) | 0.0212 (11) | −0.0004 (8) | 0.0060 (8) | 0.0009 (9) |
C14 | 0.0204 (11) | 0.0224 (13) | 0.0158 (10) | 0.0030 (10) | 0.0032 (8) | −0.0022 (10) |
C15 | 0.0199 (11) | 0.0221 (13) | 0.0180 (10) | 0.0010 (9) | 0.0007 (8) | 0.0038 (10) |
C16 | 0.0145 (10) | 0.0144 (12) | 0.0232 (11) | 0.0011 (8) | 0.0028 (8) | 0.0036 (9) |
C17 | 0.0159 (10) | 0.0170 (12) | 0.0209 (11) | 0.0010 (9) | 0.0064 (8) | −0.0019 (9) |
C18 | 0.0156 (10) | 0.0179 (12) | 0.0234 (11) | 0.0019 (9) | 0.0063 (8) | 0.0009 (9) |
C20 | 0.0177 (11) | 0.0214 (14) | 0.0255 (11) | −0.0028 (9) | 0.0008 (8) | −0.0012 (10) |
C21 | 0.0178 (11) | 0.0224 (13) | 0.0191 (11) | −0.0024 (9) | 0.0002 (8) | −0.0034 (9) |
C22 | 0.0201 (11) | 0.0260 (13) | 0.0242 (12) | −0.0040 (10) | 0.0045 (9) | −0.0041 (10) |
C23 | 0.0252 (12) | 0.0208 (14) | 0.0380 (14) | −0.0037 (10) | 0.0063 (10) | −0.0037 (12) |
C25 | 0.0212 (11) | 0.0188 (13) | 0.0253 (12) | 0.0050 (9) | 0.0054 (9) | 0.0006 (9) |
C26 | 0.0157 (11) | 0.0228 (13) | 0.0300 (13) | 0.0009 (9) | 0.0011 (9) | −0.0029 (11) |
Cl4A | 0.0224 (3) | 0.0194 (3) | 0.0403 (4) | −0.0056 (2) | −0.0011 (2) | −0.0055 (3) |
Cl5A | 0.0187 (3) | 0.0217 (3) | 0.0365 (3) | 0.0013 (2) | −0.0030 (2) | 0.0022 (3) |
O11A | 0.0234 (9) | 0.0205 (10) | 0.0379 (10) | −0.0064 (7) | 0.0010 (7) | −0.0012 (8) |
O12A | 0.0167 (8) | 0.0300 (11) | 0.0460 (11) | −0.0033 (8) | 0.0022 (7) | −0.0011 (10) |
O21A | 0.0235 (10) | 0.0288 (13) | 0.0670 (15) | 0.0038 (9) | −0.0066 (9) | 0.0050 (11) |
O22A | 0.0332 (10) | 0.0233 (11) | 0.0454 (11) | 0.0070 (8) | 0.0064 (8) | 0.0099 (9) |
C1A | 0.0196 (11) | 0.0202 (12) | 0.0164 (10) | −0.0012 (9) | 0.0059 (8) | −0.0025 (9) |
C2A | 0.0179 (11) | 0.0213 (13) | 0.0189 (11) | 0.0020 (9) | 0.0063 (8) | 0.0011 (9) |
C3A | 0.0241 (11) | 0.0119 (12) | 0.0230 (11) | 0.0020 (9) | 0.0085 (9) | 0.0013 (9) |
C4A | 0.0175 (11) | 0.0159 (12) | 0.0227 (11) | −0.0053 (9) | 0.0040 (8) | −0.0037 (9) |
C5A | 0.0164 (10) | 0.0173 (12) | 0.0192 (11) | 0.0012 (9) | 0.0029 (8) | 0.0015 (9) |
C6A | 0.0185 (10) | 0.0142 (11) | 0.0201 (10) | −0.0008 (9) | 0.0043 (8) | 0.0008 (9) |
C11A | 0.0184 (11) | 0.0252 (14) | 0.0231 (12) | −0.0039 (9) | 0.0053 (9) | −0.0021 (10) |
C21A | 0.0226 (12) | 0.0265 (15) | 0.0282 (13) | 0.0069 (10) | 0.0043 (9) | 0.0006 (11) |
Cl4A—C4A | 1.728 (2) | C20—C21 | 1.499 (3) |
Cl5A—C5A | 1.733 (2) | C21—C22 | 1.319 (4) |
O2—C2 | 1.373 (3) | C22—C23 | 1.506 (4) |
O2—C25 | 1.433 (3) | C1—H1 | 0.9300 |
O3—C3 | 1.370 (3) | C4—H4 | 0.9300 |
O3—C26 | 1.441 (3) | C8—H8 | 0.9800 |
O24—C23 | 1.444 (3) | C11—H11A | 0.9700 |
O24—C12 | 1.427 (3) | C11—H11B | 0.9700 |
O25—C10 | 1.222 (3) | C12—H12 | 0.9800 |
O11A—C11A | 1.243 (3) | C13—H13 | 0.9800 |
O12A—C11A | 1.267 (3) | C14—H14 | 0.9800 |
O21A—C21A | 1.294 (3) | C15—H15A | 0.9700 |
O22A—C21A | 1.216 (3) | C15—H15B | 0.9700 |
O21A—H21A | 0.84 (5) | C16—H16 | 0.9800 |
N9—C8 | 1.490 (3) | C17—H17B | 0.9700 |
N9—C10 | 1.370 (3) | C17—H17A | 0.9700 |
N9—C5 | 1.416 (3) | C18—H18A | 0.9700 |
N19—C18 | 1.510 (3) | C18—H18B | 0.9700 |
N19—C20 | 1.504 (3) | C20—H20B | 0.9700 |
N19—C16 | 1.539 (3) | C20—H20A | 0.9700 |
N19—H19 | 0.90 (3) | C22—H22 | 0.9300 |
C1—C6 | 1.400 (3) | C23—H23A | 0.9700 |
C1—C2 | 1.392 (3) | C23—H23B | 0.9700 |
C2—C3 | 1.420 (3) | C25—H25A | 0.9600 |
C3—C4 | 1.391 (3) | C25—H25B | 0.9600 |
C4—C5 | 1.397 (3) | C25—H25C | 0.9600 |
C5—C6 | 1.384 (3) | C26—H26A | 0.9600 |
C6—C7 | 1.498 (3) | C26—H26B | 0.9600 |
C7—C8 | 1.561 (3) | C26—H26C | 0.9600 |
C7—C17 | 1.539 (3) | C1A—C2A | 1.409 (3) |
C7—C16 | 1.545 (3) | C1A—C11A | 1.523 (3) |
C8—C13 | 1.530 (3) | C1A—C6A | 1.400 (3) |
C10—C11 | 1.523 (3) | C2A—C3A | 1.394 (3) |
C11—C12 | 1.547 (3) | C2A—C21A | 1.535 (3) |
C12—C13 | 1.542 (3) | C3A—C4A | 1.382 (3) |
C13—C14 | 1.536 (3) | C4A—C5A | 1.388 (4) |
C14—C15 | 1.536 (4) | C5A—C6A | 1.384 (3) |
C14—C21 | 1.527 (3) | C3A—H3A | 0.9300 |
C15—C16 | 1.512 (3) | C6A—H6A | 0.9300 |
C17—C18 | 1.515 (3) | ||
C2—O2—C25 | 116.78 (17) | C13—C12—H12 | 109.00 |
C3—O3—C26 | 115.44 (18) | C11—C12—H12 | 109.00 |
C12—O24—C23 | 114.93 (18) | C8—C13—H13 | 106.00 |
C21A—O21A—H21A | 113 (3) | C12—C13—H13 | 106.00 |
C5—N9—C10 | 125.69 (18) | C14—C13—H13 | 106.00 |
C8—N9—C10 | 118.92 (18) | C13—C14—H14 | 109.00 |
C5—N9—C8 | 109.28 (17) | C15—C14—H14 | 109.00 |
C16—N19—C20 | 113.69 (17) | C21—C14—H14 | 109.00 |
C18—N19—C20 | 111.85 (18) | C14—C15—H15B | 110.00 |
C16—N19—C18 | 107.42 (16) | C16—C15—H15A | 110.00 |
C20—N19—H19 | 107.6 (16) | C16—C15—H15B | 110.00 |
C16—N19—H19 | 105.1 (18) | H15A—C15—H15B | 108.00 |
C18—N19—H19 | 111.0 (15) | C14—C15—H15A | 110.00 |
C2—C1—C6 | 119.0 (2) | N19—C16—H16 | 109.00 |
C1—C2—C3 | 119.6 (2) | C15—C16—H16 | 109.00 |
O2—C2—C1 | 124.14 (19) | C7—C16—H16 | 109.00 |
O2—C2—C3 | 116.25 (18) | C7—C17—H17A | 111.00 |
C2—C3—C4 | 121.10 (19) | C18—C17—H17A | 111.00 |
O3—C3—C4 | 123.42 (18) | C18—C17—H17B | 111.00 |
O3—C3—C2 | 115.5 (2) | H17A—C17—H17B | 109.00 |
C3—C4—C5 | 118.09 (19) | C7—C17—H17B | 111.00 |
N9—C5—C6 | 110.36 (18) | N19—C18—H18B | 111.00 |
C4—C5—C6 | 121.4 (2) | C17—C18—H18A | 111.00 |
N9—C5—C4 | 128.3 (2) | N19—C18—H18A | 111.00 |
C5—C6—C7 | 110.5 (2) | H18A—C18—H18B | 109.00 |
C1—C6—C7 | 128.34 (19) | C17—C18—H18B | 111.00 |
C1—C6—C5 | 120.76 (19) | N19—C20—H20B | 110.00 |
C6—C7—C8 | 102.94 (16) | C21—C20—H20A | 110.00 |
C6—C7—C16 | 115.06 (19) | N19—C20—H20A | 110.00 |
C16—C7—C17 | 101.75 (16) | H20A—C20—H20B | 108.00 |
C8—C7—C17 | 111.62 (18) | C21—C20—H20B | 110.00 |
C6—C7—C17 | 111.83 (18) | C21—C22—H22 | 119.00 |
C8—C7—C16 | 114.00 (18) | C23—C22—H22 | 119.00 |
N9—C8—C13 | 105.87 (16) | O24—C23—H23B | 109.00 |
C7—C8—C13 | 117.28 (17) | C22—C23—H23A | 109.00 |
N9—C8—C7 | 104.28 (17) | O24—C23—H23A | 109.00 |
O25—C10—N9 | 122.8 (2) | H23A—C23—H23B | 108.00 |
O25—C10—C11 | 122.7 (2) | C22—C23—H23B | 109.00 |
N9—C10—C11 | 114.39 (17) | O2—C25—H25A | 109.00 |
C10—C11—C12 | 116.39 (19) | O2—C25—H25C | 109.00 |
C11—C12—C13 | 109.52 (19) | H25A—C25—H25B | 110.00 |
O24—C12—C13 | 114.60 (17) | H25A—C25—H25C | 109.00 |
O24—C12—C11 | 104.85 (18) | H25B—C25—H25C | 109.00 |
C8—C13—C12 | 107.31 (17) | O2—C25—H25B | 110.00 |
C12—C13—C14 | 118.33 (19) | O3—C26—H26A | 110.00 |
C8—C13—C14 | 112.97 (17) | O3—C26—H26C | 109.00 |
C15—C14—C21 | 109.42 (18) | H26A—C26—H26B | 110.00 |
C13—C14—C15 | 105.96 (18) | O3—C26—H26B | 109.00 |
C13—C14—C21 | 114.47 (18) | H26B—C26—H26C | 109.00 |
C14—C15—C16 | 108.96 (18) | H26A—C26—H26C | 109.00 |
N19—C16—C15 | 110.63 (18) | C2A—C1A—C6A | 118.4 (2) |
C7—C16—C15 | 115.44 (17) | C2A—C1A—C11A | 128.38 (19) |
N19—C16—C7 | 104.59 (17) | C6A—C1A—C11A | 113.1 (2) |
C7—C17—C18 | 103.11 (17) | C1A—C2A—C3A | 118.7 (2) |
N19—C18—C17 | 104.48 (17) | C1A—C2A—C21A | 128.9 (2) |
N19—C20—C21 | 110.21 (17) | C3A—C2A—C21A | 112.3 (2) |
C14—C21—C22 | 122.6 (2) | C2A—C3A—C4A | 121.7 (2) |
C20—C21—C22 | 121.8 (2) | Cl4A—C4A—C5A | 120.86 (16) |
C14—C21—C20 | 115.6 (2) | C3A—C4A—C5A | 119.6 (2) |
C21—C22—C23 | 122.9 (2) | Cl4A—C4A—C3A | 119.52 (19) |
O24—C23—C22 | 111.2 (2) | Cl5A—C5A—C6A | 119.21 (19) |
C2—C1—H1 | 120.00 | C4A—C5A—C6A | 119.2 (2) |
C6—C1—H1 | 121.00 | Cl5A—C5A—C4A | 121.56 (17) |
C5—C4—H4 | 121.00 | C1A—C6A—C5A | 121.8 (2) |
C3—C4—H4 | 121.00 | O11A—C11A—C1A | 116.46 (19) |
N9—C8—H8 | 110.00 | O12A—C11A—C1A | 119.9 (2) |
C13—C8—H8 | 110.00 | O11A—C11A—O12A | 123.6 (2) |
C7—C8—H8 | 110.00 | O21A—C21A—C2A | 119.7 (2) |
C10—C11—H11B | 108.00 | O22A—C21A—C2A | 118.5 (2) |
C12—C11—H11A | 108.00 | O21A—C21A—O22A | 121.8 (3) |
C10—C11—H11A | 108.00 | C2A—C3A—H3A | 119.00 |
H11A—C11—H11B | 107.00 | C4A—C3A—H3A | 119.00 |
C12—C11—H11B | 108.00 | C1A—C6A—H6A | 119.00 |
O24—C12—H12 | 109.00 | C5A—C6A—H6A | 119.00 |
C25—O2—C2—C1 | 1.1 (3) | C6—C7—C8—C13 | 100.84 (19) |
C25—O2—C2—C3 | −179.61 (18) | C6—C7—C8—N9 | −15.8 (2) |
C26—O3—C3—C2 | −174.67 (17) | C17—C7—C16—N19 | 31.8 (2) |
C26—O3—C3—C4 | 6.6 (3) | C17—C7—C16—C15 | 153.6 (2) |
C23—O24—C12—C13 | −67.2 (2) | C8—C7—C16—C15 | 33.3 (3) |
C23—O24—C12—C11 | 172.68 (19) | C7—C8—C13—C14 | 39.7 (3) |
C12—O24—C23—C22 | 87.8 (2) | N9—C8—C13—C14 | 155.46 (18) |
C5—N9—C10—C11 | 163.85 (19) | C7—C8—C13—C12 | 171.88 (17) |
C5—N9—C10—O25 | −18.7 (3) | N9—C8—C13—C12 | −72.3 (2) |
C10—N9—C5—C6 | −155.4 (2) | N9—C10—C11—C12 | −43.7 (3) |
C8—N9—C5—C6 | −3.5 (2) | O25—C10—C11—C12 | 138.9 (2) |
C10—N9—C5—C4 | 26.7 (3) | C10—C11—C12—C13 | 11.6 (2) |
C8—N9—C10—O25 | −168.2 (2) | C10—C11—C12—O24 | 135.00 (19) |
C8—N9—C5—C4 | 178.6 (2) | C11—C12—C13—C14 | 173.12 (17) |
C5—N9—C8—C7 | 12.4 (2) | C11—C12—C13—C8 | 43.9 (2) |
C10—N9—C8—C13 | 42.1 (2) | O24—C12—C13—C8 | −73.6 (2) |
C8—N9—C10—C11 | 14.4 (3) | O24—C12—C13—C14 | 55.6 (3) |
C5—N9—C8—C13 | −111.97 (19) | C8—C13—C14—C21 | 60.0 (3) |
C10—N9—C8—C7 | 166.43 (18) | C12—C13—C14—C15 | 172.82 (17) |
C16—N19—C18—C17 | −17.7 (2) | C8—C13—C14—C15 | −60.6 (2) |
C20—N19—C16—C15 | −9.8 (3) | C12—C13—C14—C21 | −66.5 (3) |
C18—N19—C16—C15 | −134.06 (19) | C13—C14—C21—C20 | −120.9 (2) |
C18—N19—C20—C21 | 75.8 (2) | C13—C14—C21—C22 | 58.7 (3) |
C20—N19—C16—C7 | 115.2 (2) | C15—C14—C21—C22 | 177.4 (2) |
C16—N19—C20—C21 | −46.1 (2) | C13—C14—C15—C16 | 68.9 (2) |
C18—N19—C16—C7 | −9.2 (2) | C21—C14—C15—C16 | −55.0 (2) |
C20—N19—C18—C17 | −143.14 (18) | C15—C14—C21—C20 | −2.1 (3) |
C2—C1—C6—C7 | −171.5 (2) | C14—C15—C16—N19 | 61.7 (2) |
C6—C1—C2—C3 | 2.2 (3) | C14—C15—C16—C7 | −56.8 (2) |
C2—C1—C6—C5 | 0.3 (3) | C7—C17—C18—N19 | 37.9 (2) |
C6—C1—C2—O2 | −178.52 (19) | N19—C20—C21—C14 | 53.0 (2) |
O2—C2—C3—C4 | 178.15 (18) | N19—C20—C21—C22 | −126.5 (2) |
O2—C2—C3—O3 | −0.7 (3) | C20—C21—C22—C23 | 177.0 (2) |
C1—C2—C3—C4 | −2.6 (3) | C14—C21—C22—C23 | −2.5 (4) |
C1—C2—C3—O3 | 178.65 (18) | C21—C22—C23—O24 | −64.5 (3) |
C2—C3—C4—C5 | 0.3 (3) | C6A—C1A—C2A—C3A | 7.0 (3) |
O3—C3—C4—C5 | 178.97 (19) | C6A—C1A—C2A—C21A | −169.7 (2) |
C3—C4—C5—C6 | 2.3 (3) | C11A—C1A—C2A—C3A | −169.4 (2) |
C3—C4—C5—N9 | −180.0 (2) | C11A—C1A—C2A—C21A | 13.9 (4) |
N9—C5—C6—C1 | 179.27 (19) | C2A—C1A—C6A—C5A | −6.6 (3) |
C4—C5—C6—C1 | −2.6 (3) | C11A—C1A—C6A—C5A | 170.4 (2) |
C4—C5—C6—C7 | 170.48 (19) | C2A—C1A—C11A—O11A | −177.8 (2) |
N9—C5—C6—C7 | −7.6 (2) | C2A—C1A—C11A—O12A | 4.8 (4) |
C1—C6—C7—C8 | −172.8 (2) | C6A—C1A—C11A—O11A | 5.6 (3) |
C5—C6—C7—C8 | 14.7 (2) | C6A—C1A—C11A—O12A | −171.8 (2) |
C5—C6—C7—C17 | −105.2 (2) | C1A—C2A—C3A—C4A | −1.5 (3) |
C1—C6—C7—C16 | −48.2 (3) | C21A—C2A—C3A—C4A | 175.8 (2) |
C5—C6—C7—C16 | 139.34 (19) | C1A—C2A—C21A—O21A | −16.0 (4) |
C1—C6—C7—C17 | 67.2 (3) | C1A—C2A—C21A—O22A | 163.9 (2) |
C6—C7—C16—C15 | −85.3 (2) | C3A—C2A—C21A—O21A | 167.1 (2) |
C8—C7—C17—C18 | 78.8 (2) | C3A—C2A—C21A—O22A | −13.0 (3) |
C16—C7—C17—C18 | −43.2 (2) | C2A—C3A—C4A—Cl4A | 174.28 (17) |
C16—C7—C8—C13 | −24.5 (3) | C2A—C3A—C4A—C5A | −4.9 (3) |
C17—C7—C8—C13 | −139.07 (18) | Cl4A—C4A—C5A—Cl5A | 6.1 (3) |
C6—C7—C16—N19 | 152.91 (18) | Cl4A—C4A—C5A—C6A | −173.72 (17) |
C16—C7—C8—N9 | −141.13 (17) | C3A—C4A—C5A—Cl5A | −174.72 (17) |
C8—C7—C16—N19 | −88.5 (2) | C3A—C4A—C5A—C6A | 5.5 (3) |
C6—C7—C17—C18 | −166.49 (18) | Cl5A—C5A—C6A—C1A | −179.53 (17) |
C17—C7—C8—N9 | 104.28 (19) | C4A—C5A—C6A—C1A | 0.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N19—H19···O11A | 0.90 (3) | 1.75 (3) | 2.639 (3) | 170 (2) |
O21A—H21A···O12A | 0.84 (5) | 1.61 (5) | 2.441 (3) | 170 (4) |
C3A—H3A···O22A | 0.93 | 2.31 | 2.667 (3) | 103 |
C4—H4···O25 | 0.93 | 2.45 | 2.953 (3) | 114 |
C6A—H6A···O11A | 0.93 | 2.26 | 2.635 (3) | 103 |
C16—H16···O12A | 0.98 | 2.55 | 3.402 (3) | 145 |
C17—H17B···O2i | 0.97 | 2.53 | 3.441 (3) | 156 |
C18—H18B···O3i | 0.97 | 2.48 | 3.279 (3) | 140 |
C22—H22···O22Aii | 0.93 | 2.45 | 3.316 (3) | 155 |
Symmetry codes: (i) −x+3, y+1/2, −z+1; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C23H27N2O4+·C8H3Cl2O4− |
Mr | 629.47 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 130 |
a, b, c (Å) | 9.5085 (10), 12.9946 (13), 11.5893 (12) |
β (°) | 104.110 (2) |
V (Å3) | 1388.8 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.29 |
Crystal size (mm) | 0.45 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.86, 0.96 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8761, 4923, 4747 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.087, 1.04 |
No. of reflections | 4923 |
No. of parameters | 396 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.28, −0.27 |
Absolute structure | Flack (1983) |
Absolute structure parameter | 0.07 (5) |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), PLATON (Spek, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
N19—H19···O11A | 0.90 (3) | 1.75 (3) | 2.639 (3) | 170 (2) |
O21A—H21A···O12A | 0.84 (5) | 1.61 (5) | 2.441 (3) | 170 (4) |
C3A—H3A···O22A | 0.93 | 2.31 | 2.667 (3) | 103 |
C4—H4···O25 | 0.93 | 2.45 | 2.953 (3) | 114 |
C6A—H6A···O11A | 0.93 | 2.26 | 2.635 (3) | 103 |
C16—H16···O12A | 0.98 | 2.55 | 3.402 (3) | 145 |
C17—H17B···O2i | 0.97 | 2.53 | 3.441 (3) | 156 |
C18—H18B···O3i | 0.97 | 2.48 | 3.279 (3) | 140 |
C22—H22···O22Aii | 0.93 | 2.45 | 3.316 (3) | 155 |
Symmetry codes: (i) −x+3, y+1/2, −z+1; (ii) x, y+1, z. |
Brucine (2,3-dimethoxystrychnidin-10-one) has shown a hit-or-miss ability to form crystalline salts with both chiral and achiral aromatic carboxylic acids. However, Oshikawa et al. (2002) observed the selectivity of brucine for meta-substituted benzoic acids and reported the structure of brucinium 3-nitrobenzoate. Since then, the brucinium salts of a number of other meta-substituted benzoic acids have been characterized, including 3,5-dinitrobenzoic acid (three solvent pseudopolymorphs) (Bialońska & Ciunik, 2006), 3-nitrophthalic acid (Smith et al., 2005), 5-nitrosalicylic, 3,5-dinitrosalicylic and 5-sulfosalicylic acids (Smith, et al., 2006a), and isophthalic acid (Smith, et al., 2006b). We also obtained good crystals of the title compound from the 1:1 stoichiometric reaction of 4,5-dichlorophthalic acid with brucine in methanol and its structure is reported here.
In (I), protonation occurs as expected at N19 of the brucine cage (Fig. 1), the invoked Peerdeman (1956) absolute configuration giving the overall Cahn-Ingold-Prelog stereochemistry of the cation molecule as C7(S), C8(S), C12(S), C13(R), C14(R), C16(S), N19(S). The cations and anions give a single N–H···Ocarboxylate hydrogen-bonding association resulting in dimers which are extended via weak head-to-tail C–H···Omethoxy associations (Table 1) into chains which form down the 21 screw axis of the unit cell (Fig. 2). The brucinium cations give a variant of the previously described undulating sheet host substructure which is present in a significant number of brucine compounds (Gould & Walkinshaw, 1984; Bialońska & Ciunik, 2004a, 2004b; Smith, et al., 2006a).
The hydrogen 4,5-dichlorophthalate anion is essentially planar [torsion angles C2A–C1A–C11A–O11A, -177.8 (2) °: C1A–C2A–C21A–O22A, -163.9 (2) °], having a strong intramolecular hydrogen bond [2.441 (3) Å] between the carboxylic acid and the ortho-related carboxylate group. This is similar to that found in other acid salts of 4,5-dichlorophthalic acid (Mallinson et al., 2003; Bozkurt et al., 2006).