Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807060606/om2179sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807060606/om2179Isup2.hkl |
CCDC reference: 672744
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.003 Å
- R factor = 0.028
- wR factor = 0.069
- Data-to-parameter ratio = 20.1
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 0 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The reaction of (pipzH2)(py-2,5-dc)·2H2O (200 mg, 0.797 mmol) (Sheshmani et al., 2007) in water (20 ml) with Cd(NO3)2. 4H2O (122.2 mg, 0.477 mmol) in water (20 ml) gave yellow crystals of the title compound. Crystals were obtained by slow evaporation of the solvent at room temperature.
The hydrogen atoms of NH2, OH groups and water molecules were found in difference Fourier synthesis. The H(C) atom positions were calculated. All hydrogen atoms were refined in isotropic approximation in riding model with with the Uiso(H) parameters equal to 1.2 Ueq(Ci), 1.2 Ueq(Ni) and 1.2 Ueq(Oi) where U(Ci), U(Ni), U(Oi) are respectively the equivalent thermal parameters of the carbon, nitrogen and oxygen atoms to which corresponding H atoms are bonded.
Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Sheldrick, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
(C4H12N2)1.5[Cd(C7H3NO4)2(C7H4NO4)]·3(H2O) | F(000) = 1624 |
Mr = 795.00 | Dx = 1.735 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 745 reflections |
a = 13.7672 (12) Å | θ = 3–30° |
b = 10.2603 (11) Å | µ = 0.80 mm−1 |
c = 21.6094 (13) Å | T = 100 K |
β = 94.498 (5)° | Plate, light-yellow |
V = 3043.3 (5) Å3 | 0.28 × 0.22 × 0.11 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 8883 independent reflections |
Radiation source: fine-focus sealed tube | 7598 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ω scans | θmax = 30.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −19→19 |
Tmin = 0.806, Tmax = 0.917 | k = −14→14 |
38910 measured reflections | l = −30→30 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: mixed |
wR(F2) = 0.070 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0276P)2 + 2.5491P] where P = (Fo2 + 2Fc2)/3 |
8883 reflections | (Δ/σ)max < 0.001 |
442 parameters | Δρmax = 0.78 e Å−3 |
0 restraints | Δρmin = −0.65 e Å−3 |
(C4H12N2)1.5[Cd(C7H3NO4)2(C7H4NO4)]·3(H2O) | V = 3043.3 (5) Å3 |
Mr = 795.00 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.7672 (12) Å | µ = 0.80 mm−1 |
b = 10.2603 (11) Å | T = 100 K |
c = 21.6094 (13) Å | 0.28 × 0.22 × 0.11 mm |
β = 94.498 (5)° |
Bruker APEXII CCD area-detector diffractometer | 8883 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 7598 reflections with I > 2σ(I) |
Tmin = 0.806, Tmax = 0.917 | Rint = 0.040 |
38910 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 0 restraints |
wR(F2) = 0.070 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.78 e Å−3 |
8883 reflections | Δρmin = −0.65 e Å−3 |
442 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.709004 (9) | 0.739983 (12) | 0.594580 (6) | 0.01003 (4) | |
O1 | 0.83962 (9) | 0.86515 (12) | 0.63429 (6) | 0.0128 (3) | |
O2 | 0.87909 (9) | 1.05633 (13) | 0.67854 (6) | 0.0141 (3) | |
O3 | 0.40797 (10) | 1.06452 (13) | 0.78369 (7) | 0.0168 (3) | |
O4 | 0.38638 (10) | 0.87127 (13) | 0.73797 (7) | 0.0167 (3) | |
O5 | 0.62991 (9) | 0.57646 (13) | 0.64763 (6) | 0.0142 (3) | |
O6 | 0.64812 (9) | 0.37858 (13) | 0.68990 (6) | 0.0148 (3) | |
O7 | 1.11749 (10) | 0.36822 (13) | 0.58105 (7) | 0.0173 (3) | |
O8 | 1.08444 (9) | 0.57318 (12) | 0.55059 (6) | 0.0145 (3) | |
O9 | 0.73333 (10) | 0.86078 (14) | 0.50713 (6) | 0.0172 (3) | |
O10 | 0.66850 (10) | 0.92918 (15) | 0.41471 (7) | 0.0202 (3) | |
O11 | 0.22901 (9) | 0.65304 (13) | 0.50417 (6) | 0.0147 (3) | |
H11 | 0.1820 | 0.6061 | 0.5189 | 0.018* | |
O12 | 0.32851 (10) | 0.53151 (14) | 0.56775 (6) | 0.0172 (3) | |
N1 | 0.65409 (11) | 0.88647 (15) | 0.66553 (7) | 0.0116 (3) | |
N2 | 0.80882 (11) | 0.56423 (14) | 0.60400 (7) | 0.0108 (3) | |
N3 | 0.56902 (11) | 0.73429 (15) | 0.52851 (7) | 0.0134 (3) | |
C1 | 0.71783 (12) | 0.97944 (17) | 0.68513 (8) | 0.0100 (3) | |
C2 | 0.69177 (13) | 1.08094 (17) | 0.72300 (8) | 0.0115 (3) | |
H2A | 0.7372 | 1.1477 | 0.7350 | 0.014* | |
C3 | 0.59843 (13) | 1.08348 (17) | 0.74299 (8) | 0.0114 (3) | |
H3A | 0.5789 | 1.1526 | 0.7685 | 0.014* | |
C4 | 0.53389 (13) | 0.98388 (17) | 0.72531 (8) | 0.0103 (3) | |
C5 | 0.56469 (13) | 0.88834 (17) | 0.68570 (9) | 0.0125 (3) | |
H5A | 0.5203 | 0.8213 | 0.6723 | 0.015* | |
C6 | 0.82083 (13) | 0.96732 (17) | 0.66481 (8) | 0.0109 (3) | |
C7 | 0.43471 (13) | 0.97279 (18) | 0.75035 (8) | 0.0116 (3) | |
C8 | 0.77745 (13) | 0.46138 (17) | 0.63571 (8) | 0.0098 (3) | |
C9 | 0.83589 (13) | 0.35308 (17) | 0.64822 (8) | 0.0110 (3) | |
H9A | 0.8121 | 0.2806 | 0.6698 | 0.013* | |
C10 | 0.92945 (13) | 0.35198 (17) | 0.62885 (8) | 0.0109 (3) | |
H10A | 0.9709 | 0.2792 | 0.6377 | 0.013* | |
C11 | 0.96222 (13) | 0.45823 (17) | 0.59640 (8) | 0.0100 (3) | |
C12 | 0.89842 (13) | 0.56229 (17) | 0.58498 (8) | 0.0113 (3) | |
H12A | 0.9198 | 0.6352 | 0.5626 | 0.014* | |
C13 | 0.67642 (12) | 0.47250 (17) | 0.65941 (8) | 0.0111 (3) | |
C14 | 1.06341 (13) | 0.46379 (17) | 0.57460 (8) | 0.0110 (3) | |
C15 | 0.56654 (13) | 0.81333 (18) | 0.47872 (8) | 0.0128 (3) | |
C16 | 0.48100 (14) | 0.83600 (19) | 0.44168 (9) | 0.0161 (4) | |
H16A | 0.4809 | 0.8922 | 0.4067 | 0.019* | |
C17 | 0.39538 (14) | 0.77511 (19) | 0.45653 (9) | 0.0161 (4) | |
H17A | 0.3357 | 0.7911 | 0.4326 | 0.019* | |
C18 | 0.39879 (13) | 0.69049 (18) | 0.50698 (8) | 0.0130 (3) | |
C19 | 0.48773 (13) | 0.67273 (19) | 0.54121 (9) | 0.0146 (4) | |
H19A | 0.4906 | 0.6139 | 0.5752 | 0.017* | |
C20 | 0.66403 (14) | 0.87369 (18) | 0.46580 (9) | 0.0147 (4) | |
C21 | 0.31293 (13) | 0.61792 (18) | 0.52853 (8) | 0.0128 (3) | |
N4 | 0.46845 (11) | 0.42344 (15) | 0.72888 (7) | 0.0113 (3) | |
H4A | 0.5327 | 0.4214 | 0.7238 | 0.014* | |
H4B | 0.4594 | 0.3912 | 0.7667 | 0.014* | |
N5 | 0.27191 (11) | 0.48289 (16) | 0.68252 (7) | 0.0131 (3) | |
H5B | 0.2077 | 0.4849 | 0.6878 | 0.016* | |
H5C | 0.2808 | 0.5153 | 0.6447 | 0.016* | |
C22 | 0.41556 (13) | 0.34063 (18) | 0.68056 (9) | 0.0135 (3) | |
H22A | 0.4384 | 0.2494 | 0.6852 | 0.016* | |
H22B | 0.4300 | 0.3715 | 0.6389 | 0.016* | |
C23 | 0.30682 (13) | 0.34577 (19) | 0.68618 (9) | 0.0160 (4) | |
H23A | 0.2728 | 0.2941 | 0.6524 | 0.019* | |
H23B | 0.2916 | 0.3072 | 0.7263 | 0.019* | |
C24 | 0.32492 (13) | 0.56542 (18) | 0.73070 (9) | 0.0139 (3) | |
H24A | 0.3106 | 0.5345 | 0.7724 | 0.017* | |
H24B | 0.3020 | 0.6566 | 0.7261 | 0.017* | |
C25 | 0.43351 (13) | 0.56072 (18) | 0.72507 (9) | 0.0135 (3) | |
H25A | 0.4487 | 0.5992 | 0.6849 | 0.016* | |
H25B | 0.4674 | 0.6126 | 0.7588 | 0.016* | |
N6 | 0.98114 (11) | 0.96424 (14) | 0.56222 (7) | 0.0106 (3) | |
H6A | 1.0313 | 1.0031 | 0.5841 | 0.013* | |
H6B | 0.9448 | 0.9232 | 0.5891 | 0.013* | |
C26 | 1.01934 (13) | 0.86728 (17) | 0.51893 (8) | 0.0115 (3) | |
H26A | 0.9643 | 0.8206 | 0.4966 | 0.014* | |
H26B | 1.0602 | 0.8024 | 0.5428 | 0.014* | |
C27 | 0.92074 (13) | 1.06511 (17) | 0.52730 (8) | 0.0117 (3) | |
H27A | 0.8974 | 1.1299 | 0.5567 | 0.014* | |
H27B | 0.8632 | 1.0234 | 0.5052 | 0.014* | |
O13 | 0.27606 (11) | 0.82653 (15) | 0.62966 (7) | 0.0239 (3) | |
H13A | 0.3020 | 0.8846 | 0.6108 | 0.029* | |
H13B | 0.3134 | 0.8413 | 0.6603 | 0.029* | |
O14 | 0.08580 (10) | 0.80772 (13) | 0.66212 (6) | 0.0165 (3) | |
H14A | 0.0792 | 0.7299 | 0.6693 | 0.020* | |
H14B | 0.1411 | 0.8113 | 0.6507 | 0.020* | |
O15 | 0.86394 (10) | 0.88915 (13) | 0.38261 (6) | 0.0148 (3) | |
H15A | 0.8116 | 0.8887 | 0.3982 | 0.018* | |
H15B | 0.8719 | 0.8129 | 0.3931 | 0.018* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.00777 (6) | 0.00968 (6) | 0.01284 (6) | 0.00003 (4) | 0.00212 (4) | 0.00010 (5) |
O1 | 0.0094 (6) | 0.0130 (6) | 0.0164 (6) | −0.0006 (5) | 0.0036 (5) | −0.0020 (5) |
O2 | 0.0109 (6) | 0.0134 (6) | 0.0182 (7) | −0.0029 (5) | 0.0024 (5) | −0.0009 (5) |
O3 | 0.0108 (6) | 0.0178 (7) | 0.0224 (7) | −0.0001 (5) | 0.0059 (5) | −0.0067 (5) |
O4 | 0.0126 (6) | 0.0156 (6) | 0.0226 (7) | −0.0042 (5) | 0.0062 (5) | −0.0019 (5) |
O5 | 0.0117 (6) | 0.0135 (6) | 0.0178 (7) | 0.0014 (5) | 0.0047 (5) | 0.0034 (5) |
O6 | 0.0119 (6) | 0.0126 (6) | 0.0205 (7) | −0.0004 (5) | 0.0060 (5) | 0.0034 (5) |
O7 | 0.0120 (6) | 0.0122 (6) | 0.0285 (8) | 0.0026 (5) | 0.0059 (6) | 0.0036 (5) |
O8 | 0.0113 (6) | 0.0113 (6) | 0.0219 (7) | −0.0007 (5) | 0.0071 (5) | 0.0031 (5) |
O9 | 0.0119 (6) | 0.0220 (7) | 0.0177 (7) | −0.0054 (5) | 0.0012 (5) | 0.0043 (5) |
O10 | 0.0162 (7) | 0.0264 (8) | 0.0183 (7) | −0.0048 (6) | 0.0037 (5) | 0.0093 (6) |
O11 | 0.0089 (6) | 0.0208 (7) | 0.0144 (6) | −0.0039 (5) | 0.0009 (5) | 0.0032 (5) |
O12 | 0.0135 (7) | 0.0211 (7) | 0.0174 (7) | −0.0019 (5) | 0.0032 (5) | 0.0060 (5) |
N1 | 0.0099 (7) | 0.0112 (7) | 0.0139 (7) | −0.0008 (5) | 0.0027 (6) | −0.0010 (6) |
N2 | 0.0097 (7) | 0.0102 (7) | 0.0128 (7) | −0.0008 (5) | 0.0031 (6) | 0.0002 (5) |
N3 | 0.0107 (7) | 0.0157 (7) | 0.0141 (7) | −0.0024 (6) | 0.0019 (6) | 0.0019 (6) |
C1 | 0.0089 (8) | 0.0118 (8) | 0.0095 (8) | 0.0000 (6) | 0.0015 (6) | 0.0024 (6) |
C2 | 0.0115 (8) | 0.0106 (8) | 0.0124 (8) | −0.0012 (6) | 0.0011 (6) | 0.0020 (6) |
C3 | 0.0128 (8) | 0.0103 (8) | 0.0114 (8) | 0.0016 (6) | 0.0017 (6) | 0.0014 (6) |
C4 | 0.0088 (8) | 0.0112 (8) | 0.0113 (8) | 0.0004 (6) | 0.0022 (6) | 0.0017 (6) |
C5 | 0.0097 (8) | 0.0126 (8) | 0.0154 (9) | −0.0015 (6) | 0.0024 (7) | −0.0018 (7) |
C6 | 0.0092 (8) | 0.0124 (8) | 0.0112 (8) | 0.0007 (6) | 0.0013 (6) | 0.0031 (6) |
C7 | 0.0083 (8) | 0.0154 (8) | 0.0113 (8) | 0.0008 (6) | 0.0010 (6) | 0.0027 (6) |
C8 | 0.0098 (8) | 0.0101 (7) | 0.0098 (8) | −0.0017 (6) | 0.0022 (6) | −0.0006 (6) |
C9 | 0.0112 (8) | 0.0098 (7) | 0.0122 (8) | −0.0016 (6) | 0.0023 (6) | 0.0005 (6) |
C10 | 0.0107 (8) | 0.0086 (7) | 0.0133 (8) | 0.0006 (6) | 0.0003 (6) | −0.0007 (6) |
C11 | 0.0094 (8) | 0.0105 (7) | 0.0103 (8) | −0.0013 (6) | 0.0014 (6) | −0.0009 (6) |
C12 | 0.0101 (8) | 0.0109 (8) | 0.0135 (8) | −0.0008 (6) | 0.0041 (6) | 0.0001 (6) |
C13 | 0.0076 (8) | 0.0138 (8) | 0.0118 (8) | −0.0020 (6) | 0.0005 (6) | −0.0026 (6) |
C14 | 0.0092 (8) | 0.0118 (8) | 0.0120 (8) | −0.0012 (6) | 0.0018 (6) | −0.0011 (6) |
C15 | 0.0128 (8) | 0.0150 (8) | 0.0110 (8) | −0.0030 (6) | 0.0025 (6) | 0.0002 (6) |
C16 | 0.0154 (9) | 0.0203 (9) | 0.0127 (8) | −0.0024 (7) | 0.0009 (7) | 0.0042 (7) |
C17 | 0.0119 (8) | 0.0208 (9) | 0.0152 (9) | −0.0020 (7) | −0.0004 (7) | 0.0021 (7) |
C18 | 0.0103 (8) | 0.0168 (8) | 0.0119 (8) | −0.0037 (6) | 0.0014 (6) | 0.0003 (7) |
C19 | 0.0130 (9) | 0.0186 (9) | 0.0123 (8) | −0.0036 (7) | 0.0021 (7) | 0.0036 (7) |
C20 | 0.0139 (9) | 0.0142 (8) | 0.0166 (9) | −0.0019 (7) | 0.0051 (7) | 0.0009 (7) |
C21 | 0.0109 (8) | 0.0172 (8) | 0.0106 (8) | −0.0035 (6) | 0.0034 (6) | −0.0015 (7) |
N4 | 0.0086 (7) | 0.0138 (7) | 0.0116 (7) | −0.0001 (5) | 0.0006 (5) | 0.0021 (6) |
N5 | 0.0081 (7) | 0.0200 (8) | 0.0115 (7) | 0.0007 (6) | 0.0026 (5) | 0.0006 (6) |
C22 | 0.0126 (8) | 0.0141 (8) | 0.0140 (8) | 0.0007 (6) | 0.0019 (7) | −0.0016 (7) |
C23 | 0.0123 (9) | 0.0159 (9) | 0.0200 (9) | −0.0039 (7) | 0.0020 (7) | −0.0033 (7) |
C24 | 0.0127 (8) | 0.0130 (8) | 0.0162 (9) | 0.0010 (6) | 0.0026 (7) | −0.0011 (7) |
C25 | 0.0113 (8) | 0.0124 (8) | 0.0167 (9) | −0.0005 (6) | 0.0012 (7) | −0.0008 (7) |
N6 | 0.0121 (7) | 0.0106 (7) | 0.0094 (7) | −0.0021 (5) | 0.0028 (5) | 0.0008 (5) |
C26 | 0.0149 (8) | 0.0089 (7) | 0.0109 (8) | 0.0010 (6) | 0.0022 (6) | −0.0010 (6) |
C27 | 0.0103 (8) | 0.0128 (8) | 0.0121 (8) | 0.0023 (6) | 0.0024 (6) | −0.0002 (6) |
O13 | 0.0258 (8) | 0.0231 (8) | 0.0226 (8) | −0.0076 (6) | 0.0011 (6) | 0.0031 (6) |
O14 | 0.0214 (7) | 0.0130 (6) | 0.0154 (7) | 0.0013 (5) | 0.0030 (5) | −0.0001 (5) |
O15 | 0.0137 (6) | 0.0125 (6) | 0.0184 (7) | −0.0028 (5) | 0.0024 (5) | 0.0011 (5) |
Cd1—N2 | 2.2667 (15) | C15—C16 | 1.391 (3) |
Cd1—O9 | 2.3063 (14) | C15—C20 | 1.524 (3) |
Cd1—N3 | 2.3074 (16) | C16—C17 | 1.394 (3) |
Cd1—N1 | 2.3159 (15) | C16—H16A | 0.9500 |
Cd1—O1 | 2.3190 (13) | C17—C18 | 1.392 (3) |
Cd1—O5 | 2.3476 (13) | C17—H17A | 0.9500 |
O1—C6 | 1.276 (2) | C18—C19 | 1.392 (3) |
O2—C6 | 1.236 (2) | C18—C21 | 1.502 (2) |
O3—C7 | 1.258 (2) | C19—H19A | 0.9500 |
O4—C7 | 1.254 (2) | N4—C25 | 1.489 (2) |
O5—C13 | 1.260 (2) | N4—C22 | 1.491 (2) |
O6—C13 | 1.247 (2) | N4—H4A | 0.9000 |
O7—C14 | 1.233 (2) | N4—H4B | 0.9000 |
O8—C14 | 1.279 (2) | N5—C23 | 1.487 (2) |
O9—C20 | 1.262 (2) | N5—C24 | 1.488 (2) |
O10—C20 | 1.248 (2) | N5—H5B | 0.8999 |
O11—C21 | 1.283 (2) | N5—H5C | 0.9001 |
O11—H11 | 0.8850 | C22—C23 | 1.512 (3) |
O12—C21 | 1.234 (2) | C22—H22A | 0.9900 |
N1—C5 | 1.338 (2) | C22—H22B | 0.9900 |
N1—C1 | 1.342 (2) | C23—H23A | 0.9900 |
N2—C12 | 1.331 (2) | C23—H23B | 0.9900 |
N2—C8 | 1.348 (2) | C24—C25 | 1.510 (2) |
N3—C19 | 1.332 (2) | C24—H24A | 0.9900 |
N3—C15 | 1.346 (2) | C24—H24B | 0.9900 |
C1—C2 | 1.389 (2) | C25—H25A | 0.9900 |
C1—C6 | 1.522 (2) | C25—H25B | 0.9900 |
C2—C3 | 1.388 (2) | N6—C26 | 1.489 (2) |
C2—H2A | 0.9500 | N6—C27 | 1.495 (2) |
C3—C4 | 1.388 (2) | N6—H6A | 0.8999 |
C3—H3A | 0.9500 | N6—H6B | 0.9001 |
C4—C5 | 1.389 (2) | C26—C27i | 1.513 (2) |
C4—C7 | 1.512 (2) | C26—H26A | 0.9900 |
C5—H5A | 0.9500 | C26—H26B | 0.9900 |
C8—C9 | 1.386 (2) | C27—C26i | 1.513 (2) |
C8—C13 | 1.524 (2) | C27—H27A | 0.9900 |
C9—C10 | 1.385 (2) | C27—H27B | 0.9900 |
C9—H9A | 0.9500 | O13—H13A | 0.8196 |
C10—C11 | 1.391 (2) | O13—H13B | 0.8196 |
C10—H10A | 0.9500 | O14—H14A | 0.8202 |
C11—C12 | 1.392 (2) | O14—H14B | 0.8194 |
C11—C14 | 1.506 (2) | O15—H15A | 0.8194 |
C12—H12A | 0.9500 | O15—H15B | 0.8198 |
N2—Cd1—O9 | 112.04 (5) | C15—C16—H16A | 120.5 |
N2—Cd1—N3 | 120.43 (6) | C17—C16—H16A | 120.5 |
O9—Cd1—N3 | 71.01 (5) | C18—C17—C16 | 118.88 (17) |
N2—Cd1—N1 | 133.16 (5) | C18—C17—H17A | 120.6 |
O9—Cd1—N1 | 105.64 (5) | C16—C17—H17A | 120.6 |
N3—Cd1—N1 | 97.23 (5) | C19—C18—C17 | 118.17 (17) |
N2—Cd1—O1 | 87.73 (5) | C19—C18—C21 | 116.83 (16) |
O9—Cd1—O1 | 81.22 (5) | C17—C18—C21 | 124.98 (17) |
N3—Cd1—O1 | 145.97 (5) | N3—C19—C18 | 123.14 (17) |
N1—Cd1—O1 | 71.31 (5) | N3—C19—H19A | 118.4 |
N2—Cd1—O5 | 71.86 (5) | C18—C19—H19A | 118.4 |
O9—Cd1—O5 | 152.50 (5) | O10—C20—O9 | 125.95 (17) |
N3—Cd1—O5 | 83.52 (5) | O10—C20—C15 | 116.92 (17) |
N1—Cd1—O5 | 87.28 (5) | O9—C20—C15 | 117.11 (16) |
O1—Cd1—O5 | 126.24 (5) | O12—C21—O11 | 125.88 (17) |
C6—O1—Cd1 | 117.62 (11) | O12—C21—C18 | 118.09 (17) |
C13—O5—Cd1 | 117.13 (11) | O11—C21—C18 | 116.03 (16) |
C20—O9—Cd1 | 119.09 (12) | C25—N4—C22 | 111.25 (14) |
C21—O11—H11 | 111.1 | C25—N4—H4A | 109.4 |
C5—N1—C1 | 118.86 (15) | C22—N4—H4A | 109.4 |
C5—N1—Cd1 | 125.56 (12) | C25—N4—H4B | 109.3 |
C1—N1—Cd1 | 115.52 (11) | C22—N4—H4B | 109.4 |
C12—N2—C8 | 119.15 (15) | H4A—N4—H4B | 108.1 |
C12—N2—Cd1 | 123.67 (12) | C23—N5—C24 | 111.25 (14) |
C8—N2—Cd1 | 116.90 (11) | C23—N5—H5B | 109.4 |
C19—N3—C15 | 118.78 (16) | C24—N5—H5B | 109.4 |
C19—N3—Cd1 | 123.98 (12) | C23—N5—H5C | 109.3 |
C15—N3—Cd1 | 116.55 (12) | C24—N5—H5C | 109.4 |
N1—C1—C2 | 121.74 (16) | H5B—N5—H5C | 108.1 |
N1—C1—C6 | 116.86 (15) | N4—C22—C23 | 110.86 (15) |
C2—C1—C6 | 121.39 (16) | N4—C22—H22A | 109.5 |
C1—C2—C3 | 119.07 (16) | C23—C22—H22A | 109.5 |
C1—C2—H2A | 120.5 | N4—C22—H22B | 109.5 |
C3—C2—H2A | 120.5 | C23—C22—H22B | 109.5 |
C4—C3—C2 | 119.26 (16) | H22A—C22—H22B | 108.1 |
C4—C3—H3A | 120.4 | N5—C23—C22 | 110.28 (15) |
C2—C3—H3A | 120.4 | N5—C23—H23A | 109.6 |
C3—C4—C5 | 117.99 (16) | C22—C23—H23A | 109.6 |
C3—C4—C7 | 122.23 (16) | N5—C23—H23B | 109.6 |
C5—C4—C7 | 119.69 (16) | C22—C23—H23B | 109.6 |
N1—C5—C4 | 122.95 (16) | H23A—C23—H23B | 108.1 |
N1—C5—H5A | 118.5 | N5—C24—C25 | 111.09 (15) |
C4—C5—H5A | 118.5 | N5—C24—H24A | 109.4 |
O2—C6—O1 | 125.25 (17) | C25—C24—H24A | 109.4 |
O2—C6—C1 | 118.17 (16) | N5—C24—H24B | 109.4 |
O1—C6—C1 | 116.59 (15) | C25—C24—H24B | 109.4 |
O4—C7—O3 | 124.73 (17) | H24A—C24—H24B | 108.0 |
O4—C7—C4 | 117.73 (16) | N4—C25—C24 | 110.09 (15) |
O3—C7—C4 | 117.50 (16) | N4—C25—H25A | 109.6 |
N2—C8—C9 | 121.51 (16) | C24—C25—H25A | 109.6 |
N2—C8—C13 | 116.72 (15) | N4—C25—H25B | 109.6 |
C9—C8—C13 | 121.72 (15) | C24—C25—H25B | 109.6 |
C10—C9—C8 | 119.14 (16) | H25A—C25—H25B | 108.2 |
C10—C9—H9A | 120.4 | C26—N6—C27 | 110.82 (13) |
C8—C9—H9A | 120.4 | C26—N6—H6A | 109.4 |
C9—C10—C11 | 119.48 (16) | C27—N6—H6A | 109.4 |
C9—C10—H10A | 120.3 | C26—N6—H6B | 109.5 |
C11—C10—H10A | 120.3 | C27—N6—H6B | 109.5 |
C10—C11—C12 | 117.74 (16) | H6A—N6—H6B | 108.1 |
C10—C11—C14 | 122.14 (16) | N6—C26—C27i | 110.25 (14) |
C12—C11—C14 | 120.11 (15) | N6—C26—H26A | 109.6 |
N2—C12—C11 | 122.96 (16) | C27i—C26—H26A | 109.6 |
N2—C12—H12A | 118.5 | N6—C26—H26B | 109.6 |
C11—C12—H12A | 118.5 | C27i—C26—H26B | 109.6 |
O6—C13—O5 | 125.89 (16) | H26A—C26—H26B | 108.1 |
O6—C13—C8 | 116.81 (15) | N6—C27—C26i | 109.89 (14) |
O5—C13—C8 | 117.29 (15) | N6—C27—H27A | 109.7 |
O7—C14—O8 | 126.16 (17) | C26i—C27—H27A | 109.7 |
O7—C14—C11 | 119.99 (16) | N6—C27—H27B | 109.7 |
O8—C14—C11 | 113.85 (15) | C26i—C27—H27B | 109.7 |
N3—C15—C16 | 121.89 (17) | H27A—C27—H27B | 108.2 |
N3—C15—C20 | 115.09 (16) | H13A—O13—H13B | 89.8 |
C16—C15—C20 | 123.02 (17) | H14A—O14—H14B | 102.6 |
C15—C16—C17 | 119.07 (17) | H15A—O15—H15B | 89.1 |
N2—Cd1—O1—C6 | −150.66 (13) | C2—C1—C6—O2 | −6.0 (3) |
O9—Cd1—O1—C6 | 96.63 (13) | N1—C1—C6—O1 | −4.5 (2) |
N3—Cd1—O1—C6 | 61.45 (16) | C2—C1—C6—O1 | 174.48 (16) |
N1—Cd1—O1—C6 | −13.26 (12) | C3—C4—C7—O4 | −171.23 (17) |
O5—Cd1—O1—C6 | −85.20 (13) | C5—C4—C7—O4 | 5.4 (3) |
N2—Cd1—O5—C13 | 2.77 (13) | C3—C4—C7—O3 | 6.7 (3) |
O9—Cd1—O5—C13 | 105.82 (15) | C5—C4—C7—O3 | −176.75 (17) |
N3—Cd1—O5—C13 | 127.78 (13) | C12—N2—C8—C9 | −0.9 (3) |
N1—Cd1—O5—C13 | −134.63 (13) | Cd1—N2—C8—C9 | −175.03 (13) |
O1—Cd1—O5—C13 | −70.26 (14) | C12—N2—C8—C13 | 176.65 (15) |
N2—Cd1—O9—C20 | 118.31 (14) | Cd1—N2—C8—C13 | 2.5 (2) |
N3—Cd1—O9—C20 | 2.29 (14) | N2—C8—C9—C10 | 1.5 (3) |
N1—Cd1—O9—C20 | −90.10 (14) | C13—C8—C9—C10 | −175.92 (16) |
O1—Cd1—O9—C20 | −157.77 (14) | C8—C9—C10—C11 | −1.1 (3) |
O5—Cd1—O9—C20 | 25.4 (2) | C9—C10—C11—C12 | 0.2 (3) |
N2—Cd1—N1—C5 | −104.76 (15) | C9—C10—C11—C14 | 179.36 (16) |
O9—Cd1—N1—C5 | 112.44 (15) | C8—N2—C12—C11 | −0.1 (3) |
N3—Cd1—N1—C5 | 40.20 (15) | Cd1—N2—C12—C11 | 173.65 (13) |
O1—Cd1—N1—C5 | −172.76 (16) | C10—C11—C12—N2 | 0.4 (3) |
O5—Cd1—N1—C5 | −42.91 (15) | C14—C11—C12—N2 | −178.76 (16) |
N2—Cd1—N1—C1 | 78.22 (14) | Cd1—O5—C13—O6 | 175.94 (14) |
O9—Cd1—N1—C1 | −64.59 (13) | Cd1—O5—C13—C8 | −2.5 (2) |
N3—Cd1—N1—C1 | −136.82 (13) | N2—C8—C13—O6 | −178.51 (16) |
O1—Cd1—N1—C1 | 10.22 (12) | C9—C8—C13—O6 | −1.0 (3) |
O5—Cd1—N1—C1 | 140.07 (13) | N2—C8—C13—O5 | 0.0 (2) |
O9—Cd1—N2—C12 | 32.49 (15) | C9—C8—C13—O5 | 177.55 (17) |
N3—Cd1—N2—C12 | 112.73 (14) | C10—C11—C14—O7 | 5.7 (3) |
N1—Cd1—N2—C12 | −108.61 (15) | C12—C11—C14—O7 | −175.15 (17) |
O1—Cd1—N2—C12 | −47.09 (14) | C10—C11—C14—O8 | −173.93 (16) |
O5—Cd1—N2—C12 | −176.55 (15) | C12—C11—C14—O8 | 5.2 (2) |
O9—Cd1—N2—C8 | −153.64 (12) | C19—N3—C15—C16 | 2.4 (3) |
N3—Cd1—N2—C8 | −73.39 (14) | Cd1—N3—C15—C16 | −168.50 (14) |
N1—Cd1—N2—C8 | 65.27 (15) | C19—N3—C15—C20 | −176.79 (16) |
O1—Cd1—N2—C8 | 126.79 (13) | Cd1—N3—C15—C20 | 12.3 (2) |
O5—Cd1—N2—C8 | −2.67 (12) | N3—C15—C16—C17 | 0.0 (3) |
N2—Cd1—N3—C19 | 76.60 (16) | C20—C15—C16—C17 | 179.08 (18) |
O9—Cd1—N3—C19 | −178.45 (16) | C15—C16—C17—C18 | −1.8 (3) |
N1—Cd1—N3—C19 | −74.34 (16) | C16—C17—C18—C19 | 1.3 (3) |
O1—Cd1—N3—C19 | −141.42 (14) | C16—C17—C18—C21 | −179.94 (18) |
O5—Cd1—N3—C19 | 12.07 (15) | C15—N3—C19—C18 | −2.9 (3) |
N2—Cd1—N3—C15 | −113.05 (13) | Cd1—N3—C19—C18 | 167.22 (14) |
O9—Cd1—N3—C15 | −8.10 (13) | C17—C18—C19—N3 | 1.1 (3) |
N1—Cd1—N3—C15 | 96.01 (14) | C21—C18—C19—N3 | −177.75 (17) |
O1—Cd1—N3—C15 | 28.93 (18) | Cd1—O9—C20—O10 | −175.32 (15) |
O5—Cd1—N3—C15 | −177.57 (14) | Cd1—O9—C20—C15 | 3.2 (2) |
C5—N1—C1—C2 | −3.5 (3) | N3—C15—C20—O10 | 168.19 (17) |
Cd1—N1—C1—C2 | 173.75 (13) | C16—C15—C20—O10 | −11.0 (3) |
C5—N1—C1—C6 | 175.51 (16) | N3—C15—C20—O9 | −10.4 (3) |
Cd1—N1—C1—C6 | −7.25 (19) | C16—C15—C20—O9 | 170.40 (18) |
N1—C1—C2—C3 | 2.5 (3) | C19—C18—C21—O12 | −12.1 (3) |
C6—C1—C2—C3 | −176.46 (16) | C17—C18—C21—O12 | 169.21 (19) |
C1—C2—C3—C4 | 0.8 (3) | C19—C18—C21—O11 | 167.54 (17) |
C2—C3—C4—C5 | −2.9 (3) | C17—C18—C21—O11 | −11.2 (3) |
C2—C3—C4—C7 | 173.78 (16) | C25—N4—C22—C23 | −56.94 (19) |
C1—N1—C5—C4 | 1.2 (3) | C24—N5—C23—C22 | −56.4 (2) |
Cd1—N1—C5—C4 | −175.70 (13) | N4—C22—C23—N5 | 56.2 (2) |
C3—C4—C5—N1 | 1.9 (3) | C23—N5—C24—C25 | 56.95 (19) |
C7—C4—C5—N1 | −174.80 (16) | C22—N4—C25—C24 | 56.59 (19) |
Cd1—O1—C6—O2 | −165.38 (14) | N5—C24—C25—N4 | −56.4 (2) |
Cd1—O1—C6—C1 | 14.12 (19) | C27—N6—C26—C27i | 58.1 (2) |
N1—C1—C6—O2 | 175.01 (16) | C26—N6—C27—C26i | −57.9 (2) |
Symmetry code: (i) −x+2, −y+2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···O6 | 0.90 | 1.85 | 2.714 (2) | 159 |
N4—H4B···O14ii | 0.90 | 1.91 | 2.791 (2) | 167 |
N5—H5B···O3ii | 0.90 | 1.93 | 2.766 (2) | 153 |
N5—H5C···O12 | 0.90 | 1.84 | 2.704 (2) | 160 |
N6—H6A···O15i | 0.90 | 1.91 | 2.799 (2) | 168 |
N6—H6B···O1 | 0.90 | 1.90 | 2.780 (2) | 164 |
O11—H11···O8iii | 0.89 | 1.59 | 2.439 (2) | 159 |
O13—H13A···O10iv | 0.82 | 2.04 | 2.811 (2) | 157 |
O13—H13B···O4 | 0.82 | 1.91 | 2.727 (2) | 173 |
O14—H14A···O3ii | 0.82 | 1.98 | 2.754 (2) | 158 |
O14—H14B···O13 | 0.82 | 1.95 | 2.771 (2) | 175 |
O15—H15A···O10 | 0.82 | 2.07 | 2.860 (2) | 162 |
O15—H15B···O7v | 0.82 | 1.94 | 2.761 (2) | 177 |
C9—H9A···O2vi | 0.95 | 2.48 | 3.161 (2) | 129 |
C19—H19A···O5 | 0.95 | 2.41 | 3.064 (2) | 126 |
C22—H22B···O12 | 0.99 | 2.58 | 3.280 (2) | 127 |
C24—H24A···O15vii | 0.99 | 2.56 | 3.317 (2) | 133 |
C24—H24B···O4 | 0.99 | 2.49 | 3.251 (2) | 133 |
C26—H26B···O8 | 0.99 | 2.38 | 3.206 (2) | 141 |
C27—H27B···O9 | 0.99 | 2.45 | 3.327 (2) | 148 |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) −x+1/2, y−1/2, −z+3/2; (iii) x−1, y, z; (iv) −x+1, −y+2, −z+1; (v) −x+2, −y+1, −z+1; (vi) x, y−1, z; (vii) x−1/2, −y+3/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | (C4H12N2)1.5[Cd(C7H3NO4)2(C7H4NO4)]·3(H2O) |
Mr | 795.00 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 13.7672 (12), 10.2603 (11), 21.6094 (13) |
β (°) | 94.498 (5) |
V (Å3) | 3043.3 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.80 |
Crystal size (mm) | 0.28 × 0.22 × 0.11 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.806, 0.917 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38910, 8883, 7598 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.070, 1.05 |
No. of reflections | 8883 |
No. of parameters | 442 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.78, −0.65 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Sheldrick, 1998).
Cd1—N2 | 2.2667 (15) | Cd1—N1 | 2.3159 (15) |
Cd1—O9 | 2.3063 (14) | Cd1—O1 | 2.3190 (13) |
Cd1—N3 | 2.3074 (16) | Cd1—O5 | 2.3476 (13) |
O9—Cd1—N3 | 71.01 (5) | N1—Cd1—O1 | 71.31 (5) |
N2—Cd1—N1 | 133.16 (5) | N2—Cd1—O5 | 71.86 (5) |
N3—Cd1—O1 | 145.97 (5) | O9—Cd1—O5 | 152.50 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···O6 | 0.90 | 1.85 | 2.714 (2) | 159 |
N4—H4B···O14i | 0.90 | 1.91 | 2.791 (2) | 167 |
N5—H5B···O3i | 0.90 | 1.93 | 2.766 (2) | 153 |
N5—H5C···O12 | 0.90 | 1.84 | 2.704 (2) | 160 |
N6—H6A···O15ii | 0.90 | 1.91 | 2.799 (2) | 168 |
N6—H6B···O1 | 0.90 | 1.90 | 2.780 (2) | 164 |
O11—H11···O8iii | 0.89 | 1.59 | 2.439 (2) | 159 |
O13—H13A···O10iv | 0.82 | 2.04 | 2.811 (2) | 157 |
O13—H13B···O4 | 0.82 | 1.91 | 2.727 (2) | 173 |
O14—H14A···O3i | 0.82 | 1.98 | 2.754 (2) | 158 |
O14—H14B···O13 | 0.82 | 1.95 | 2.771 (2) | 175 |
O15—H15A···O10 | 0.82 | 2.07 | 2.860 (2) | 162 |
O15—H15B···O7v | 0.82 | 1.94 | 2.761 (2) | 177 |
C9—H9A···O2vi | 0.95 | 2.48 | 3.161 (2) | 129 |
C19—H19A···O5 | 0.95 | 2.41 | 3.064 (2) | 126 |
C22—H22B···O12 | 0.99 | 2.58 | 3.280 (2) | 127 |
C24—H24A···O15vii | 0.99 | 2.56 | 3.317 (2) | 133 |
C24—H24B···O4 | 0.99 | 2.49 | 3.251 (2) | 133 |
C26—H26B···O8 | 0.99 | 2.38 | 3.206 (2) | 141 |
C27—H27B···O9 | 0.99 | 2.45 | 3.327 (2) | 148 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+3/2; (ii) −x+2, −y+2, −z+1; (iii) x−1, y, z; (iv) −x+1, −y+2, −z+1; (v) −x+2, −y+1, −z+1; (vi) x, y−1, z; (vii) x−1/2, −y+3/2, z+1/2. |
We have previously reported some proton transfer systems, using pyridine-2,6-dicarboxylic acid (pydcH2), pyridine-2,5-dicarboxylic acid (py-2,5-dcH2) and piperazine (pipz) which have formed the proton transfer compounds (pipzH2)(pydcH)2.3H2O and (pipzH2)(py-2,5-dc).2H2O. The crystal structures of some complexes of these systems have been reported (Aghabozorg, Attar Gharamaleki et al., 2007; Aghabozorg, Daneshvar et al., 2007; Aghabozorg, Motyeian et al., 2007). We describe here the crystal structure of the title compound which consists of monomeric units in which the (pipzH2) units act as counter ions and the (py-2,5-dc)2– anions as bidentate ligands. The N3—Cd1—O1 [145.97 (5)°], O5—Cd1—O9 [152.50 (5)°], N2—Cd1—N1 [133.16 (5)°] angles show that the coordination environment around CdII is distorted octahedral (Table 1 and Fig.1). There are a large number of O—H···O, N—H···O and C—H···O hydrogen bonds with distances ranging from 2.439 (2) Å to 3.327 (2) Å between water molecules, piperazindiium and pyridine-2,5-dicarboxylate fragments (Table 2). These interactions as well as C—H···π interactions between C—H groups and aromatic rings of pyridine-2,5-dicarboxylate with distances of 3.224 and 3.473 Å result in the formation of supramolecular structure (Fig. 2 and Fig. 3).