Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807058138/pk2062sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807058138/pk2062Isup2.hkl |
CCDC reference: 614057
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.002 Å
- R factor = 0.032
- wR factor = 0.087
- Data-to-parameter ratio = 19.0
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 2.68 Ratio PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 4
Alert level G PLAT794_ALERT_5_G Check Predicted Bond Valency for Zn1 (2) 1.71
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 2 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
checkCIF publication errors
Alert level A PUBL024_ALERT_1_A The number of authors is greater than 5. Please specify the role of each of the co-authors for your paper.
Author Response: Diane Conrad, Jennifer DeCoskey, Samantha Mock, and Jelena Petrovic are undergraduates who worked on synthesizing, purifying, and crystallizing the samples of the porphyrin. Edward Zovinka is the research advisor and Bruce Noll is the crystallographer on the project. |
1 ALERT level A = Data missing that is essential or data in wrong format 0 ALERT level G = General alerts. Data that may be required is missing
The ligand, 5,10,15,20 Tetra (2',6'-dimethoxyphenyl) porphyrin [(H2T-2',6'- DMP)P] was synthesized following literature methods (Tsuchida et al., 1990). Standard porphyrin metal insertion methods were used to obtain the title compound (Rothemund & Menotti, 1948). H2T(2',6'-DMP)P (70 mg, 8.2×10 -5 mol) was dissolved in glacial acetic acid (10 ml). Zinc acetate (180 mg, 8.2×10- 4 mol) was added after all of the ligand dissolved and then the solution was refluxed at 100–130 °C for one h. The solvent was removed by vacuum filtration and the crystals were rinsed three times with water. The resulting purple crystals were dissolved in dichloromethane and the solution was chromatographed on a dry alumina column using dichloromethane as the eluent. (67% Yield); Rf (Alumina, DCM) 0.36; I.R·(KBr): 2933, 1431, 1335, 1249 [νas (C—O—C)], 1110, and 998 [ν (C—H)] cm-1; λmax(DCM): 419, 546, and 579 nm; ε: 4.1×105, 7.1×103, and 6.6×102 cm-1M-1. 1HNMR(CDCl3): 3.5(–OMe), 7.0–7.5(aromatic), and 8.8(pyrrole) p.p.m.
Hydrogen atoms were placed at calculated geometries and allowed to ride on the position of the parent atom. Parameters for thermal motion were set to 1.2× the equivalent isotropic U of the parent atom, 1.5× for methyl H atoms.
Data collection: APEX2 (Bruker, 2006); cell refinement: APEX2 and SAINT (Bruker, 2006); data reduction: SAINT and XPREP (Sheldrick, 2003); program(s) used to solve structure: XS (Sheldrick, 2001); program(s) used to refine structure: XL (Sheldrick, 2001); molecular graphics: XP (Sheldrick, 1998); software used to prepare material for publication: enCIFer (Allen et al., 2004).
[Zn(C52H44N4O8)]·4CH2Cl2 | F(000) = 1292 |
Mr = 1257.99 | Dx = 1.545 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7854 reflections |
a = 13.5090 (5) Å | θ = 2.7–30.1° |
b = 15.0743 (6) Å | µ = 0.91 mm−1 |
c = 14.1788 (4) Å | T = 100 K |
β = 110.547 (1)° | Needle, translucent dark red |
V = 2703.67 (17) Å3 | 0.38 × 0.15 × 0.15 mm |
Z = 2 |
Bruker X8-APEXII CCD diffractometer | 6691 independent reflections |
Radiation source: fine-focus sealed tube, Siemens KFFMO2K-90 | 5979 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
Detector resolution: 8.33 pixels mm-1 | θmax = 28.3°, θmin = 1.8° |
ϕ and ω scans | h = −17→18 |
Absorption correction: multi-scan (SADABS; Sheldrick,2006) | k = −20→19 |
Tmin = 0.726, Tmax = 0.874 | l = −18→18 |
63198 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0375P)2 + 3.1885P] where P = (Fo2 + 2Fc2)/3 |
6691 reflections | (Δ/σ)max = 0.001 |
353 parameters | Δρmax = 0.51 e Å−3 |
0 restraints | Δρmin = −0.63 e Å−3 |
[Zn(C52H44N4O8)]·4CH2Cl2 | V = 2703.67 (17) Å3 |
Mr = 1257.99 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.5090 (5) Å | µ = 0.91 mm−1 |
b = 15.0743 (6) Å | T = 100 K |
c = 14.1788 (4) Å | 0.38 × 0.15 × 0.15 mm |
β = 110.547 (1)° |
Bruker X8-APEXII CCD diffractometer | 6691 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick,2006) | 5979 reflections with I > 2σ(I) |
Tmin = 0.726, Tmax = 0.874 | Rint = 0.029 |
63198 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 0 restraints |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.51 e Å−3 |
6691 reflections | Δρmin = −0.63 e Å−3 |
353 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. The asymmetric unit contains 1/2 Zn porphyrin and 2 molecules of dichloromethane. Zn is at a crystallographic inversion center. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.0000 | 0.0000 | 0.5000 | 0.00956 (7) | |
N1 | 0.06157 (10) | 0.05965 (9) | 0.63681 (10) | 0.0104 (3) | |
N2 | 0.12358 (10) | 0.04630 (9) | 0.46349 (10) | 0.0102 (3) | |
O1 | 0.22057 (10) | 0.31144 (8) | 0.63177 (10) | 0.0190 (3) | |
O2 | 0.41183 (10) | 0.04560 (9) | 0.71699 (10) | 0.0192 (3) | |
O3 | 0.08075 (10) | 0.09141 (8) | 0.14607 (9) | 0.0179 (3) | |
O4 | 0.16191 (10) | −0.18907 (8) | 0.29078 (10) | 0.0189 (3) | |
C1 | 0.01573 (12) | 0.06372 (11) | 0.70917 (11) | 0.0107 (3) | |
C2 | 0.08169 (13) | 0.11473 (11) | 0.79364 (12) | 0.0134 (3) | |
H2 | 0.0681 | 0.1271 | 0.8537 | 0.016* | |
C3 | 0.16680 (13) | 0.14180 (11) | 0.77160 (12) | 0.0133 (3) | |
H3 | 0.2244 | 0.1762 | 0.8134 | 0.016* | |
C4 | 0.15313 (12) | 0.10831 (11) | 0.67259 (12) | 0.0108 (3) | |
C5 | 0.22122 (12) | 0.12685 (11) | 0.62006 (12) | 0.0108 (3) | |
C6 | 0.20585 (12) | 0.09792 (10) | 0.52196 (12) | 0.0105 (3) | |
C7 | 0.27827 (13) | 0.11453 (11) | 0.46963 (12) | 0.0121 (3) | |
H7 | 0.3404 | 0.1499 | 0.4928 | 0.015* | |
C8 | 0.24066 (12) | 0.06996 (11) | 0.38082 (12) | 0.0120 (3) | |
H8 | 0.2723 | 0.0674 | 0.3307 | 0.014* | |
C9 | 0.14385 (12) | 0.02726 (11) | 0.37699 (11) | 0.0102 (3) | |
C10 | 0.08105 (12) | −0.02571 (11) | 0.29750 (11) | 0.0106 (3) | |
C11 | 0.31887 (13) | 0.17954 (11) | 0.67393 (12) | 0.0123 (3) | |
C12 | 0.31687 (13) | 0.27228 (12) | 0.67927 (12) | 0.0147 (3) | |
C13 | 0.40815 (15) | 0.32015 (13) | 0.72980 (14) | 0.0199 (4) | |
H13 | 0.4063 | 0.3831 | 0.7320 | 0.024* | |
C14 | 0.50133 (14) | 0.27500 (13) | 0.77673 (14) | 0.0213 (4) | |
H14 | 0.5638 | 0.3076 | 0.8112 | 0.026* | |
C15 | 0.50609 (14) | 0.18380 (13) | 0.77490 (13) | 0.0192 (4) | |
H15 | 0.5707 | 0.1537 | 0.8085 | 0.023* | |
C16 | 0.41458 (13) | 0.13623 (12) | 0.72301 (12) | 0.0146 (3) | |
C17 | 0.21042 (17) | 0.40184 (13) | 0.65734 (16) | 0.0265 (4) | |
H17A | 0.2308 | 0.4073 | 0.7306 | 0.040* | |
H17B | 0.1369 | 0.4210 | 0.6249 | 0.040* | |
H17C | 0.2566 | 0.4392 | 0.6340 | 0.040* | |
C18 | 0.50458 (16) | 0.00004 (14) | 0.77865 (16) | 0.0254 (4) | |
H18A | 0.5637 | 0.0150 | 0.7567 | 0.038* | |
H18B | 0.4921 | −0.0641 | 0.7725 | 0.038* | |
H18C | 0.5216 | 0.0180 | 0.8490 | 0.038* | |
C19 | 0.12417 (12) | −0.04911 (11) | 0.21652 (12) | 0.0121 (3) | |
C20 | 0.12455 (13) | 0.01095 (12) | 0.14153 (12) | 0.0147 (3) | |
C21 | 0.16797 (14) | −0.01253 (13) | 0.06877 (13) | 0.0198 (4) | |
H21 | 0.1696 | 0.0289 | 0.0189 | 0.024* | |
C22 | 0.20830 (14) | −0.09676 (14) | 0.07062 (13) | 0.0214 (4) | |
H22 | 0.2378 | −0.1128 | 0.0212 | 0.026* | |
C23 | 0.20713 (14) | −0.15862 (13) | 0.14214 (13) | 0.0190 (4) | |
H23 | 0.2340 | −0.2167 | 0.1413 | 0.023* | |
C24 | 0.16557 (13) | −0.13396 (12) | 0.21564 (12) | 0.0148 (3) | |
C25 | 0.05780 (16) | 0.14806 (13) | 0.06016 (13) | 0.0216 (4) | |
H25A | 0.1239 | 0.1653 | 0.0513 | 0.032* | |
H25B | 0.0211 | 0.2013 | 0.0703 | 0.032* | |
H25C | 0.0127 | 0.1164 | 0.0000 | 0.032* | |
C26 | 0.19103 (17) | −0.27915 (13) | 0.28487 (17) | 0.0273 (4) | |
H26A | 0.1446 | −0.3051 | 0.2214 | 0.041* | |
H26B | 0.1841 | −0.3125 | 0.3415 | 0.041* | |
H26C | 0.2645 | −0.2818 | 0.2876 | 0.041* | |
C1S | 0.96642 (18) | 0.25153 (15) | 0.52497 (18) | 0.0351 (5) | |
H1S1 | 1.0297 | 0.2440 | 0.5059 | 0.042* | |
H1S2 | 0.9871 | 0.2394 | 0.5980 | 0.042* | |
Cl1 | 0.91977 (5) | 0.36179 (4) | 0.49994 (4) | 0.04067 (15) | |
Cl2 | 0.86858 (4) | 0.17594 (4) | 0.45730 (4) | 0.02907 (12) | |
C2S | 0.63161 (17) | 0.09694 (14) | 0.48441 (16) | 0.0266 (4) | |
H2S1 | 0.6132 | 0.0393 | 0.4491 | 0.032* | |
H2S2 | 0.7095 | 0.0996 | 0.5171 | 0.032* | |
Cl3 | 0.58869 (5) | 0.18428 (3) | 0.39562 (4) | 0.03135 (12) | |
Cl4 | 0.57272 (4) | 0.10412 (4) | 0.57715 (4) | 0.03187 (12) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.00849 (12) | 0.01227 (13) | 0.00826 (12) | −0.00277 (9) | 0.00337 (9) | −0.00213 (9) |
N1 | 0.0093 (6) | 0.0126 (6) | 0.0098 (6) | −0.0015 (5) | 0.0038 (5) | −0.0012 (5) |
N2 | 0.0099 (6) | 0.0113 (6) | 0.0093 (6) | −0.0010 (5) | 0.0035 (5) | −0.0013 (5) |
O1 | 0.0168 (6) | 0.0137 (6) | 0.0265 (7) | −0.0005 (5) | 0.0075 (5) | −0.0029 (5) |
O2 | 0.0135 (6) | 0.0170 (6) | 0.0231 (6) | 0.0001 (5) | 0.0017 (5) | 0.0011 (5) |
O3 | 0.0250 (7) | 0.0171 (6) | 0.0132 (5) | 0.0007 (5) | 0.0089 (5) | 0.0030 (5) |
O4 | 0.0234 (7) | 0.0150 (6) | 0.0203 (6) | 0.0047 (5) | 0.0101 (5) | 0.0014 (5) |
C1 | 0.0116 (7) | 0.0115 (7) | 0.0090 (7) | −0.0005 (6) | 0.0035 (6) | −0.0009 (6) |
C2 | 0.0130 (8) | 0.0164 (8) | 0.0105 (7) | −0.0023 (6) | 0.0037 (6) | −0.0027 (6) |
C3 | 0.0130 (7) | 0.0154 (8) | 0.0104 (7) | −0.0033 (6) | 0.0028 (6) | −0.0033 (6) |
C4 | 0.0093 (7) | 0.0118 (7) | 0.0106 (7) | −0.0002 (6) | 0.0025 (6) | −0.0011 (6) |
C5 | 0.0090 (7) | 0.0109 (7) | 0.0118 (7) | −0.0007 (6) | 0.0026 (6) | −0.0008 (6) |
C6 | 0.0095 (7) | 0.0101 (7) | 0.0117 (7) | −0.0007 (6) | 0.0036 (6) | 0.0003 (6) |
C7 | 0.0104 (7) | 0.0134 (8) | 0.0129 (7) | −0.0021 (6) | 0.0047 (6) | 0.0001 (6) |
C8 | 0.0115 (7) | 0.0126 (7) | 0.0128 (7) | −0.0004 (6) | 0.0055 (6) | 0.0012 (6) |
C9 | 0.0094 (7) | 0.0112 (7) | 0.0103 (7) | 0.0010 (6) | 0.0038 (5) | 0.0011 (6) |
C10 | 0.0111 (7) | 0.0122 (7) | 0.0090 (7) | 0.0008 (6) | 0.0042 (6) | 0.0012 (6) |
C11 | 0.0114 (7) | 0.0163 (8) | 0.0100 (7) | −0.0041 (6) | 0.0047 (6) | −0.0025 (6) |
C12 | 0.0145 (8) | 0.0169 (8) | 0.0147 (7) | −0.0033 (6) | 0.0075 (6) | −0.0026 (6) |
C13 | 0.0209 (9) | 0.0179 (9) | 0.0234 (9) | −0.0088 (7) | 0.0109 (7) | −0.0066 (7) |
C14 | 0.0164 (8) | 0.0279 (10) | 0.0196 (8) | −0.0119 (7) | 0.0064 (7) | −0.0072 (7) |
C15 | 0.0113 (8) | 0.0283 (10) | 0.0161 (8) | −0.0046 (7) | 0.0023 (6) | −0.0001 (7) |
C16 | 0.0137 (8) | 0.0175 (8) | 0.0130 (7) | −0.0038 (6) | 0.0052 (6) | −0.0015 (6) |
C17 | 0.0305 (11) | 0.0169 (9) | 0.0346 (11) | 0.0022 (8) | 0.0145 (9) | −0.0060 (8) |
C18 | 0.0192 (9) | 0.0251 (10) | 0.0278 (10) | 0.0042 (8) | 0.0029 (8) | 0.0066 (8) |
C19 | 0.0097 (7) | 0.0166 (8) | 0.0101 (7) | −0.0024 (6) | 0.0037 (6) | −0.0029 (6) |
C20 | 0.0130 (8) | 0.0192 (8) | 0.0117 (7) | −0.0026 (6) | 0.0042 (6) | −0.0016 (6) |
C21 | 0.0174 (8) | 0.0316 (10) | 0.0124 (8) | −0.0035 (7) | 0.0076 (7) | −0.0007 (7) |
C22 | 0.0150 (8) | 0.0365 (11) | 0.0150 (8) | −0.0011 (7) | 0.0084 (6) | −0.0071 (7) |
C23 | 0.0124 (8) | 0.0257 (9) | 0.0181 (8) | 0.0026 (7) | 0.0044 (6) | −0.0076 (7) |
C24 | 0.0111 (7) | 0.0190 (8) | 0.0134 (7) | −0.0016 (6) | 0.0034 (6) | −0.0026 (6) |
C25 | 0.0259 (10) | 0.0227 (9) | 0.0155 (8) | −0.0010 (7) | 0.0063 (7) | 0.0070 (7) |
C26 | 0.0287 (10) | 0.0185 (9) | 0.0348 (11) | 0.0086 (8) | 0.0112 (9) | 0.0018 (8) |
C1S | 0.0282 (11) | 0.0283 (11) | 0.0356 (11) | 0.0042 (9) | −0.0050 (9) | −0.0046 (9) |
Cl1 | 0.0454 (3) | 0.0281 (3) | 0.0340 (3) | 0.0073 (2) | −0.0042 (2) | −0.0048 (2) |
Cl2 | 0.0257 (2) | 0.0308 (3) | 0.0263 (2) | −0.00326 (19) | 0.00364 (19) | 0.00526 (19) |
C2S | 0.0322 (11) | 0.0231 (10) | 0.0276 (10) | 0.0090 (8) | 0.0142 (8) | 0.0092 (8) |
Cl3 | 0.0422 (3) | 0.0211 (2) | 0.0259 (2) | 0.0049 (2) | 0.0059 (2) | 0.00504 (18) |
Cl4 | 0.0307 (3) | 0.0339 (3) | 0.0367 (3) | 0.0072 (2) | 0.0189 (2) | 0.0061 (2) |
Zn1—N1 | 2.0324 (13) | C13—C14 | 1.379 (3) |
Zn1—N1i | 2.0324 (13) | C13—H13 | 0.9500 |
Zn1—N2i | 2.0368 (13) | C14—C15 | 1.377 (3) |
Zn1—N2 | 2.0368 (13) | C14—H14 | 0.9500 |
N1—C4 | 1.373 (2) | C15—C16 | 1.395 (2) |
N1—C1 | 1.3733 (19) | C15—H15 | 0.9500 |
N2—C6 | 1.372 (2) | C17—H17A | 0.9800 |
N2—C9 | 1.3775 (19) | C17—H17B | 0.9800 |
O1—C12 | 1.371 (2) | C17—H17C | 0.9800 |
O1—C17 | 1.429 (2) | C18—H18A | 0.9800 |
O2—C16 | 1.368 (2) | C18—H18B | 0.9800 |
O2—C18 | 1.427 (2) | C18—H18C | 0.9800 |
O3—C20 | 1.361 (2) | C19—C24 | 1.398 (2) |
O3—C25 | 1.430 (2) | C19—C20 | 1.398 (2) |
O4—C24 | 1.365 (2) | C20—C21 | 1.399 (2) |
O4—C26 | 1.424 (2) | C21—C22 | 1.378 (3) |
C1—C10i | 1.400 (2) | C21—H21 | 0.9500 |
C1—C2 | 1.439 (2) | C22—C23 | 1.382 (3) |
C2—C3 | 1.356 (2) | C22—H22 | 0.9500 |
C2—H2 | 0.9500 | C23—C24 | 1.397 (2) |
C3—C4 | 1.441 (2) | C23—H23 | 0.9500 |
C3—H3 | 0.9500 | C25—H25A | 0.9800 |
C4—C5 | 1.400 (2) | C25—H25B | 0.9800 |
C5—C6 | 1.402 (2) | C25—H25C | 0.9800 |
C5—C11 | 1.499 (2) | C26—H26A | 0.9800 |
C6—C7 | 1.442 (2) | C26—H26B | 0.9800 |
C7—C8 | 1.359 (2) | C26—H26C | 0.9800 |
C7—H7 | 0.9500 | C1S—Cl2 | 1.754 (2) |
C8—C9 | 1.441 (2) | C1S—Cl1 | 1.769 (2) |
C8—H8 | 0.9500 | C1S—H1S1 | 0.9900 |
C9—C10 | 1.399 (2) | C1S—H1S2 | 0.9900 |
C10—C1i | 1.400 (2) | C2S—Cl4 | 1.763 (2) |
C10—C19 | 1.501 (2) | C2S—Cl3 | 1.773 (2) |
C11—C16 | 1.397 (2) | C2S—H2S1 | 0.9900 |
C11—C12 | 1.401 (2) | C2S—H2S2 | 0.9900 |
C12—C13 | 1.391 (2) | ||
N1—Zn1—N1i | 180.0 | C14—C15—H15 | 120.5 |
N1—Zn1—N2i | 90.37 (5) | C16—C15—H15 | 120.5 |
N1i—Zn1—N2i | 89.64 (5) | O2—C16—C15 | 123.07 (16) |
N1—Zn1—N2 | 89.63 (5) | O2—C16—C11 | 115.82 (14) |
N1i—Zn1—N2 | 90.36 (5) | C15—C16—C11 | 121.11 (16) |
N2i—Zn1—N2 | 180.0 | O1—C17—H17A | 109.5 |
C4—N1—C1 | 106.50 (13) | O1—C17—H17B | 109.5 |
C4—N1—Zn1 | 127.08 (10) | H17A—C17—H17B | 109.5 |
C1—N1—Zn1 | 126.31 (11) | O1—C17—H17C | 109.5 |
C6—N2—C9 | 106.52 (13) | H17A—C17—H17C | 109.5 |
C6—N2—Zn1 | 127.11 (10) | H17B—C17—H17C | 109.5 |
C9—N2—Zn1 | 126.28 (11) | O2—C18—H18A | 109.5 |
C12—O1—C17 | 116.42 (14) | O2—C18—H18B | 109.5 |
C16—O2—C18 | 116.32 (14) | H18A—C18—H18B | 109.5 |
C20—O3—C25 | 117.38 (14) | O2—C18—H18C | 109.5 |
C24—O4—C26 | 116.60 (14) | H18A—C18—H18C | 109.5 |
N1—C1—C10i | 125.91 (14) | H18B—C18—H18C | 109.5 |
N1—C1—C2 | 109.62 (14) | C24—C19—C20 | 118.53 (15) |
C10i—C1—C2 | 124.46 (14) | C24—C19—C10 | 119.07 (14) |
C3—C2—C1 | 107.25 (14) | C20—C19—C10 | 122.40 (15) |
C3—C2—H2 | 126.4 | O3—C20—C19 | 115.06 (14) |
C1—C2—H2 | 126.4 | O3—C20—C21 | 124.19 (16) |
C2—C3—C4 | 106.85 (14) | C19—C20—C21 | 120.75 (16) |
C2—C3—H3 | 126.6 | C22—C21—C20 | 118.96 (17) |
C4—C3—H3 | 126.6 | C22—C21—H21 | 120.5 |
N1—C4—C5 | 125.81 (14) | C20—C21—H21 | 120.5 |
N1—C4—C3 | 109.75 (13) | C21—C22—C23 | 121.96 (16) |
C5—C4—C3 | 124.38 (15) | C21—C22—H22 | 119.0 |
C4—C5—C6 | 124.72 (15) | C23—C22—H22 | 119.0 |
C4—C5—C11 | 117.37 (14) | C22—C23—C24 | 118.64 (17) |
C6—C5—C11 | 117.89 (14) | C22—C23—H23 | 120.7 |
N2—C6—C5 | 125.63 (14) | C24—C23—H23 | 120.7 |
N2—C6—C7 | 109.85 (13) | O4—C24—C23 | 123.67 (16) |
C5—C6—C7 | 124.44 (15) | O4—C24—C19 | 115.19 (14) |
C8—C7—C6 | 106.89 (14) | C23—C24—C19 | 121.14 (16) |
C8—C7—H7 | 126.6 | O3—C25—H25A | 109.5 |
C6—C7—H7 | 126.6 | O3—C25—H25B | 109.5 |
C7—C8—C9 | 107.15 (14) | H25A—C25—H25B | 109.5 |
C7—C8—H8 | 126.4 | O3—C25—H25C | 109.5 |
C9—C8—H8 | 126.4 | H25A—C25—H25C | 109.5 |
N2—C9—C10 | 125.63 (14) | H25B—C25—H25C | 109.5 |
N2—C9—C8 | 109.55 (14) | O4—C26—H26A | 109.5 |
C10—C9—C8 | 124.82 (14) | O4—C26—H26B | 109.5 |
C9—C10—C1i | 125.18 (14) | H26A—C26—H26B | 109.5 |
C9—C10—C19 | 117.53 (14) | O4—C26—H26C | 109.5 |
C1i—C10—C19 | 117.14 (14) | H26A—C26—H26C | 109.5 |
C16—C11—C12 | 118.14 (15) | H26B—C26—H26C | 109.5 |
C16—C11—C5 | 120.09 (15) | Cl2—C1S—Cl1 | 110.72 (12) |
C12—C11—C5 | 121.74 (15) | Cl2—C1S—H1S1 | 109.5 |
O1—C12—C13 | 123.13 (16) | Cl1—C1S—H1S1 | 109.5 |
O1—C12—C11 | 115.86 (15) | Cl2—C1S—H1S2 | 109.5 |
C13—C12—C11 | 121.01 (16) | Cl1—C1S—H1S2 | 109.5 |
C14—C13—C12 | 119.10 (17) | H1S1—C1S—H1S2 | 108.1 |
C14—C13—H13 | 120.4 | Cl4—C2S—Cl3 | 111.31 (11) |
C12—C13—H13 | 120.4 | Cl4—C2S—H2S1 | 109.4 |
C15—C14—C13 | 121.63 (17) | Cl3—C2S—H2S1 | 109.4 |
C15—C14—H14 | 119.2 | Cl4—C2S—H2S2 | 109.4 |
C13—C14—H14 | 119.2 | Cl3—C2S—H2S2 | 109.4 |
C14—C15—C16 | 118.99 (17) | H2S1—C2S—H2S2 | 108.0 |
Symmetry code: (i) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C52H44N4O8)]·4CH2Cl2 |
Mr | 1257.99 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 13.5090 (5), 15.0743 (6), 14.1788 (4) |
β (°) | 110.547 (1) |
V (Å3) | 2703.67 (17) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.91 |
Crystal size (mm) | 0.38 × 0.15 × 0.15 |
Data collection | |
Diffractometer | Bruker X8-APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick,2006) |
Tmin, Tmax | 0.726, 0.874 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 63198, 6691, 5979 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.087, 1.05 |
No. of reflections | 6691 |
No. of parameters | 353 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.51, −0.63 |
Computer programs: APEX2 (Bruker, 2006), APEX2 and SAINT (Bruker, 2006), SAINT and XPREP (Sheldrick, 2003), XS (Sheldrick, 2001), XL (Sheldrick, 2001), XP (Sheldrick, 1998), enCIFer (Allen et al., 2004).
ortho-Functionalized porphyrins have generated interest for a variety of reasons. While ortho functionalization can prevent aggregation and unwanted reactions (Wagner et al., 1994), Suslick used the title compound as a starting material for the construction of porous molecular solids (Suslick, 2005). As part of our continued investigations into the active site of hydroxylamine oxidoreductase (HAO) in Nitrosomonas europea, we report the solid state structure of tetra(2',6'-dimethoxyphenyl) porphyrin complexed with zinc. The compound is of interest as a non redox active control model of the active site of HAO. The characterized metalloporphyrin is stable to both air and moisture in both the solid and solution environments.
The compound is prepared by the reaction of zinc acetate with the ligand in refluxing glacial acetic acid. After purification by column chromatography, zinc tetra (2',6'-dimethoxyphenyl) porphyrin was dissolved in dichloromethane and layered with hexanes. This yielded crystals suitable for X-ray diffraction. The crystallographically determined structure is shown in Figure 1. The asymmetric unit consists of 0.5 zinc porphyrin and 2 molecules of dichloromethane. The zinc ion is at a crystallographic inversion center and is four coordinate with a planar porphyrin ligand. The nitrogen core is flat with Zn—N bond lengths of 2.0324 (13) Å and 2.0368 (13) Å which is slightly shorter than the median Zn—N bond distance of 2.046 Å for zinc porphyrins found in a search of the CSD (Allen, 2002). A closely related molecule, zinc tetra (2',6'-dihydroxyphenyl)porphyrin Zn[T(2',6'-DHP)P](EtOAc)2 has a slightly longer average Zn—N bond distance of 2.043 Å in comparison to the title compound (Bhryappa, 1997). The ether C—O bonds are asymmetric, shorter to the aryl group, and longer to the methyl group. The Ar—O average bond distance is 1.366 (2) Å, comparable to the 1.366 (17) Å distance found from Mogul (Bruno et al., 2004). The average Me—O length is 1.428 (2) Å, which is consistent with 1.42 (4) Å found from Mogul. Further studies are underway to examine the structural and solution properties of chloro iron (III) tetra (2',6'- dimethoxyphenyl) porphyrin and other metallo derivatives of tetra (2', 6'- dihydroxoxyphenyl) porphyrins.