Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807055900/xu2355sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807055900/xu2355Isup2.hkl |
CCDC reference: 672874
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.010 Å
- R factor = 0.054
- wR factor = 0.171
- Data-to-parameter ratio = 8.6
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.73 Ratio PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C26 PLAT245_ALERT_2_B U(iso) H26 Smaller than U(eq) C26 by ... 0.06 AngSq PLAT410_ALERT_2_B Short Intra H...H Contact H4 .. H17B .. 1.87 Ang.
Alert level C PLAT026_ALERT_3_C Ratio Observed / Unique Reflections too Low .... 41 Perc. PLAT230_ALERT_2_C Hirshfeld Test Diff for O2 - C21 .. 5.27 su PLAT230_ALERT_2_C Hirshfeld Test Diff for O3 - C15 .. 5.17 su PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for C27 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C22 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C28 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C37 PLAT245_ALERT_2_C U(iso) H1A Smaller than U(eq) C1 by ... 0.02 AngSq PLAT245_ALERT_2_C U(iso) H1B Smaller than U(eq) C1 by ... 0.02 AngSq PLAT245_ALERT_2_C U(iso) H27 Smaller than U(eq) C27 by ... 0.04 AngSq PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 10
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 25.53 From the CIF: _reflns_number_total 3765 Count of symmetry unique reflns 3811 Completeness (_total/calc) 98.79% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 0 Fraction of Friedel pairs measured 0.000 Are heavy atom types Z>Si present no PLAT791_ALERT_1_G Confirm the Absolute Configuration of C2 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C3 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C4 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C5 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C7 = . R PLAT791_ALERT_1_G Confirm the Absolute Configuration of C9 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C11 = . S PLAT791_ALERT_1_G Confirm the Absolute Configuration of C15 = . R
0 ALERT level A = In general: serious problem 4 ALERT level B = Potentially serious problem 11 ALERT level C = Check and explain 9 ALERT level G = General alerts; check 8 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 13 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
The seeds of Euphorbia lathyris were collected in Sichuan province of China. The powdered seeds (10 kg) were extracted with EtOH three times and filtered. The filtrate was evaporated in vacuo, the residue was suspended in H2O and partitioned successively with EtOA. This EtOA extract was subjected to column chromatography on Si gel eluted with petroleum-EtOA (15:1, 10:1, 8:1, 4:1, 2:1 and 1:1) and methanol to yield fractions 1–10. Fraction 3 (10 g) was chromatographed over Si gel (petroleum ether-EtOA, 4:1) to give three fractions. The second fraction was eluted with petroleum-acetone (5:1) on Si gel, followed by RP18 (MeOH-H2O, 85:15) to provide the pure title compound as colorless crystals. Suitable crystals were obtained by slow evaporation of a methanol solution at room temperature.
All hydrogen atoms were located geometrically with C—H distances of 0.93–0.98 Å, and refined using a riding model. The absolute configuration could not be determined from the X-ray analysis, owing to the absence of significant anomalous scatterers, and Friedel pairs were averaged. The current absolute configuration was assigned by reference to the chiral molecule of known absolute configuration which had been confirmed on a biogenetic basis (Appendino, et al., 1999).
Data collection: DIFRAC (Gabe & White, 1993); cell refinement: DIFRAC (Gabe & White, 1993); data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Frarrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 1997).
C38H42O9 | F(000) = 1368 |
Mr = 642.72 | Dx = 1.171 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 27 reflections |
a = 13.418 (6) Å | θ = 4.5–5.7° |
b = 14.989 (4) Å | µ = 0.08 mm−1 |
c = 18.126 (5) Å | T = 298 K |
V = 3646 (2) Å3 | Block, colourless |
Z = 4 | 0.36 × 0.34 × 0.25 mm |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.006 |
Radiation source: fine-focus sealed tube | θmax = 25.5°, θmin = 1.8° |
Graphite monochromator | h = −1→16 |
ω/2–θ scans | k = −3→18 |
3800 measured reflections | l = −2→21 |
3765 independent reflections | 3 standard reflections every 300 reflections |
1525 reflections with I > 2σ(I) | intensity decay: 1.2% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.054 | H-atom parameters constrained |
wR(F2) = 0.171 | w = 1/[σ2(Fo2) + (0.092P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.91 | (Δ/σ)max = 0.001 |
3765 reflections | Δρmax = 0.18 e Å−3 |
436 parameters | Δρmin = −0.18 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0043 (9) |
C38H42O9 | V = 3646 (2) Å3 |
Mr = 642.72 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 13.418 (6) Å | µ = 0.08 mm−1 |
b = 14.989 (4) Å | T = 298 K |
c = 18.126 (5) Å | 0.36 × 0.34 × 0.25 mm |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.006 |
3800 measured reflections | 3 standard reflections every 300 reflections |
3765 independent reflections | intensity decay: 1.2% |
1525 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.171 | H-atom parameters constrained |
S = 0.91 | Δρmax = 0.18 e Å−3 |
3765 reflections | Δρmin = −0.18 e Å−3 |
436 parameters |
Experimental. 13C NMR (150 MHz, CDCl3, δ, p.p.m.): 47.88(C1), 37.63(C2), 79.55(C3), 52.92(C4), 64.24(C5), 142.09 (C6), 78.57(C7), 28.79(C8), 31.54(C9), 24.65(C10), 27.78(C11), 142.61 (C12), 135.56(C13), 197.53(C14), 91.98 (C15), 14.12(C16), 119.60(C17), 28.68(C18), 16.61(C19), 12.73(C20), 165.97(C21), 130.34(C22),129.65(C23), 128.31(C24), 135.56(C25), 128.31(C26), 129.65(C27), 169.69(C28), 21.83(C29), 165.60(C30), 130.16(C31), 129.60(C32), 128.32(C33), 135.56(C34), 128.32(C35), 129.60(C36), 169.33(C37), 20.91(C38). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.0377 (5) | 0.2624 (4) | 0.7591 (3) | 0.122 (2) | |
O2 | 0.9735 (3) | 0.3457 (3) | 0.8502 (2) | 0.0665 (12) | |
O3 | 0.9039 (3) | 0.4391 (2) | 0.9900 (2) | 0.0678 (12) | |
O4 | 0.9028 (5) | 0.5847 (3) | 1.0151 (4) | 0.124 (2) | |
O5 | 1.1394 (4) | 0.5087 (4) | 1.0605 (3) | 0.114 (2) | |
O6 | 0.9231 (3) | 0.0905 (2) | 1.0792 (2) | 0.0647 (12) | |
O7 | 1.0540 (4) | 0.0179 (3) | 1.1286 (3) | 0.0835 (14) | |
O8 | 0.9920 (3) | 0.1948 (2) | 0.9494 (2) | 0.0651 (12) | |
O9 | 0.8264 (4) | 0.1850 (4) | 0.9472 (4) | 0.108 (2) | |
C1 | 1.0492 (6) | 0.4971 (4) | 0.9242 (4) | 0.083 (2) | |
H1A | 0.9928 | 0.5168 | 0.8949 | 0.066 (9)* | |
H1B | 1.0856 | 0.5491 | 0.9410 | 0.066 (9)* | |
C2 | 1.1172 (5) | 0.4361 (4) | 0.8783 (4) | 0.074 (2) | |
H2 | 1.1830 | 0.4345 | 0.9016 | 0.074 (7)* | |
C3 | 1.0681 (5) | 0.3479 (4) | 0.8898 (3) | 0.0649 (18) | |
H3 | 1.1117 | 0.2991 | 0.8740 | 0.074 (7)* | |
C4 | 1.0490 (4) | 0.3439 (3) | 0.9722 (3) | 0.0511 (15) | |
H4 | 1.1150 | 0.3385 | 0.9948 | 0.074 (7)* | |
C5 | 0.9883 (4) | 0.2666 (3) | 1.0035 (3) | 0.0490 (15) | |
H5 | 0.9189 | 0.2861 | 1.0084 | 0.074 (7)* | |
C6 | 1.0215 (5) | 0.2276 (4) | 1.0770 (3) | 0.0541 (15) | |
C7 | 0.9500 (5) | 0.1715 (3) | 1.1211 (3) | 0.0543 (16) | |
H7 | 0.9843 | 0.1526 | 1.1663 | 0.074 (7)* | |
C8 | 0.8521 (5) | 0.2145 (4) | 1.1434 (3) | 0.0622 (17) | |
H8A | 0.8298 | 0.2522 | 1.1032 | 0.066 (9)* | |
H8B | 0.8028 | 0.1678 | 1.1497 | 0.066 (9)* | |
C9 | 0.8550 (5) | 0.2695 (5) | 1.2126 (3) | 0.0660 (19) | |
H9 | 0.8699 | 0.2341 | 1.2567 | 0.074 (7)* | |
C10 | 0.7880 (5) | 0.3469 (5) | 1.2283 (4) | 0.0680 (19) | |
C11 | 0.9000 (5) | 0.3631 (4) | 1.2156 (3) | 0.0696 (19) | |
H11 | 0.9391 | 0.3768 | 1.2599 | 0.074 (7)* | |
C12 | 0.9366 (5) | 0.4015 (4) | 1.1477 (4) | 0.0618 (17) | |
H12 | 0.9004 | 0.3881 | 1.1054 | 0.118 (9)* | |
C13 | 1.0172 (5) | 0.4546 (4) | 1.1383 (4) | 0.0719 (19) | |
C14 | 1.0577 (5) | 0.4734 (4) | 1.0657 (4) | 0.0721 (19) | |
C15 | 1.0136 (5) | 0.4413 (4) | 0.9903 (4) | 0.0613 (18) | |
C16 | 1.1299 (6) | 0.4676 (6) | 0.7974 (4) | 0.106 (3) | |
H16A | 1.0657 | 0.4811 | 0.7768 | 0.143 (8)* | |
H16B | 1.1608 | 0.4211 | 0.7691 | 0.143 (8)* | |
H16C | 1.1710 | 0.5199 | 0.7962 | 0.143 (8)* | |
C17 | 1.1122 (5) | 0.2392 (5) | 1.1031 (4) | 0.086 (2) | |
H17A | 1.1305 | 0.2131 | 1.1476 | 0.12 (2)* | |
H17B | 1.1579 | 0.2736 | 1.0770 | 0.12 (2)* | |
C18 | 0.7534 (6) | 0.3568 (6) | 1.3075 (4) | 0.105 (3) | |
H18A | 0.6909 | 0.3266 | 1.3137 | 0.143 (8)* | |
H18B | 0.7452 | 0.4189 | 1.3188 | 0.143 (8)* | |
H18C | 0.8021 | 0.3312 | 1.3400 | 0.143 (8)* | |
C19 | 0.7140 (5) | 0.3800 (5) | 1.1713 (4) | 0.085 (2) | |
H19A | 0.6511 | 0.3507 | 1.1785 | 0.143 (8)* | |
H19B | 0.7385 | 0.3671 | 1.1227 | 0.143 (8)* | |
H19C | 0.7055 | 0.4433 | 1.1766 | 0.143 (8)* | |
C20 | 1.0775 (6) | 0.4896 (7) | 1.2024 (4) | 0.126 (4) | |
H20A | 1.1420 | 0.4617 | 1.2025 | 0.143 (8)* | |
H20B | 1.0437 | 0.4762 | 1.2478 | 0.143 (8)* | |
H20C | 1.0853 | 0.5530 | 1.1977 | 0.143 (8)* | |
C21 | 0.9704 (6) | 0.3046 (5) | 0.7848 (4) | 0.082 (2) | |
C22 | 0.8711 (6) | 0.3159 (5) | 0.7483 (4) | 0.081 (2) | |
C23 | 0.8010 (6) | 0.3731 (5) | 0.7735 (4) | 0.075 (2) | |
H23 | 0.8130 | 0.4059 | 0.8162 | 0.118 (9)* | |
C24 | 0.7110 (7) | 0.3833 (6) | 0.7363 (6) | 0.097 (3) | |
H24 | 0.6632 | 0.4223 | 0.7547 | 0.118 (9)* | |
C25 | 0.6925 (8) | 0.3379 (8) | 0.6745 (6) | 0.128 (4) | |
H25 | 0.6323 | 0.3456 | 0.6499 | 0.118 (9)* | |
C26 | 0.7630 (10) | 0.2791 (9) | 0.6470 (6) | 0.183 (6) | |
H26 | 0.7503 | 0.2470 | 0.6041 | 0.118 (9)* | |
C27 | 0.8542 (8) | 0.2686 (8) | 0.6849 (5) | 0.153 (5) | |
H27 | 0.9024 | 0.2297 | 0.6669 | 0.118 (9)* | |
C28 | 0.9038 (7) | 0.1608 (5) | 0.9250 (4) | 0.080 (2) | |
C29 | 0.9208 (7) | 0.0912 (6) | 0.8680 (4) | 0.123 (3) | |
H29A | 0.9411 | 0.1189 | 0.8227 | 0.143 (8)* | |
H29B | 0.8602 | 0.0585 | 0.8601 | 0.143 (8)* | |
H29C | 0.9720 | 0.0511 | 0.8845 | 0.143 (8)* | |
C30 | 0.9808 (6) | 0.0189 (4) | 1.0890 (4) | 0.0637 (17) | |
C31 | 0.9457 (5) | −0.0591 (4) | 1.0448 (3) | 0.0580 (16) | |
C32 | 1.0046 (5) | −0.1350 (4) | 1.0458 (4) | 0.082 (2) | |
H32 | 1.0637 | −0.1356 | 1.0726 | 0.118 (9)* | |
C33 | 0.9758 (7) | −0.2095 (5) | 1.0072 (5) | 0.105 (3) | |
H33 | 1.0148 | −0.2607 | 1.0085 | 0.118 (9)* | |
C34 | 0.8890 (6) | −0.2084 (5) | 0.9664 (5) | 0.104 (3) | |
H34 | 0.8708 | −0.2579 | 0.9386 | 0.118 (9)* | |
C35 | 0.8301 (6) | −0.1345 (4) | 0.9672 (5) | 0.094 (3) | |
H35 | 0.7704 | −0.1345 | 0.9412 | 0.118 (9)* | |
C36 | 0.8580 (5) | −0.0600 (4) | 1.0059 (4) | 0.075 (2) | |
H36 | 0.8172 | −0.0098 | 1.0058 | 0.118 (9)* | |
C37 | 0.8580 (7) | 0.5183 (6) | 1.0018 (4) | 0.086 (2) | |
C38 | 0.7478 (6) | 0.5077 (6) | 0.9931 (5) | 0.116 (3) | |
H38A | 0.7319 | 0.5012 | 0.9417 | 0.143 (8)* | |
H38B | 0.7146 | 0.5594 | 1.0124 | 0.143 (8)* | |
H38C | 0.7261 | 0.4557 | 1.0194 | 0.143 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.132 (5) | 0.157 (5) | 0.076 (3) | 0.091 (5) | −0.009 (4) | −0.026 (4) |
O2 | 0.061 (3) | 0.080 (3) | 0.058 (3) | 0.030 (2) | 0.003 (2) | −0.006 (2) |
O3 | 0.074 (3) | 0.052 (2) | 0.078 (3) | 0.017 (2) | 0.012 (3) | 0.002 (2) |
O4 | 0.165 (6) | 0.045 (3) | 0.163 (6) | 0.014 (4) | 0.063 (5) | 0.003 (3) |
O5 | 0.087 (4) | 0.128 (4) | 0.128 (4) | −0.074 (4) | 0.042 (3) | −0.038 (4) |
O6 | 0.065 (3) | 0.046 (2) | 0.083 (3) | −0.010 (2) | −0.021 (3) | 0.001 (2) |
O7 | 0.069 (3) | 0.080 (3) | 0.102 (4) | 0.010 (3) | −0.025 (3) | −0.007 (3) |
O8 | 0.072 (3) | 0.056 (2) | 0.067 (3) | −0.007 (2) | −0.004 (2) | −0.014 (2) |
O9 | 0.066 (3) | 0.115 (4) | 0.142 (5) | −0.005 (3) | −0.036 (4) | −0.002 (4) |
C1 | 0.096 (5) | 0.049 (4) | 0.105 (5) | 0.005 (4) | 0.020 (5) | 0.008 (4) |
C2 | 0.067 (5) | 0.069 (4) | 0.087 (5) | 0.008 (4) | 0.023 (4) | 0.015 (4) |
C3 | 0.055 (4) | 0.067 (4) | 0.073 (5) | 0.018 (4) | 0.012 (4) | 0.004 (4) |
C4 | 0.046 (3) | 0.046 (3) | 0.061 (4) | 0.004 (3) | 0.004 (3) | 0.002 (3) |
C5 | 0.045 (3) | 0.044 (3) | 0.058 (4) | 0.000 (3) | 0.005 (3) | −0.008 (3) |
C6 | 0.056 (4) | 0.046 (3) | 0.061 (4) | −0.002 (3) | −0.009 (3) | 0.005 (3) |
C7 | 0.062 (4) | 0.048 (3) | 0.052 (3) | −0.003 (3) | −0.009 (3) | 0.004 (3) |
C8 | 0.059 (4) | 0.059 (4) | 0.069 (4) | −0.015 (3) | −0.001 (3) | 0.006 (4) |
C9 | 0.057 (4) | 0.086 (5) | 0.055 (4) | −0.024 (4) | 0.003 (3) | 0.010 (4) |
C10 | 0.063 (4) | 0.081 (5) | 0.060 (4) | −0.026 (4) | 0.018 (4) | −0.012 (4) |
C11 | 0.069 (5) | 0.086 (5) | 0.054 (4) | −0.032 (4) | −0.001 (4) | −0.009 (4) |
C12 | 0.055 (4) | 0.058 (4) | 0.072 (4) | −0.018 (3) | 0.013 (4) | −0.011 (3) |
C13 | 0.067 (4) | 0.077 (4) | 0.072 (5) | −0.018 (4) | 0.007 (4) | −0.025 (4) |
C14 | 0.075 (5) | 0.050 (3) | 0.091 (5) | −0.023 (4) | 0.031 (4) | −0.024 (4) |
C15 | 0.050 (4) | 0.051 (3) | 0.082 (5) | −0.004 (3) | 0.025 (4) | 0.012 (3) |
C16 | 0.112 (7) | 0.119 (7) | 0.087 (5) | 0.015 (6) | 0.042 (5) | 0.032 (5) |
C17 | 0.057 (4) | 0.094 (5) | 0.107 (6) | −0.011 (4) | −0.015 (4) | 0.037 (5) |
C18 | 0.093 (6) | 0.127 (7) | 0.095 (6) | −0.057 (5) | 0.027 (5) | −0.018 (5) |
C19 | 0.077 (5) | 0.090 (5) | 0.089 (5) | −0.017 (5) | 0.009 (5) | −0.020 (4) |
C20 | 0.096 (6) | 0.183 (9) | 0.099 (6) | −0.080 (7) | 0.016 (5) | −0.053 (6) |
C21 | 0.078 (5) | 0.094 (5) | 0.072 (5) | 0.041 (5) | 0.001 (4) | 0.014 (4) |
C22 | 0.100 (6) | 0.086 (5) | 0.058 (5) | 0.009 (5) | 0.001 (4) | 0.004 (4) |
C23 | 0.066 (5) | 0.081 (5) | 0.078 (5) | 0.008 (4) | 0.009 (4) | 0.018 (4) |
C24 | 0.075 (6) | 0.108 (6) | 0.107 (7) | 0.007 (5) | 0.008 (6) | 0.037 (6) |
C25 | 0.105 (8) | 0.175 (11) | 0.103 (8) | 0.009 (8) | −0.029 (7) | 0.033 (8) |
C26 | 0.167 (12) | 0.256 (15) | 0.126 (9) | 0.086 (12) | −0.072 (9) | −0.065 (10) |
C27 | 0.157 (10) | 0.196 (11) | 0.105 (7) | 0.092 (9) | −0.041 (7) | −0.049 (8) |
C28 | 0.101 (6) | 0.078 (5) | 0.061 (5) | −0.026 (5) | −0.030 (5) | −0.006 (4) |
C29 | 0.162 (9) | 0.127 (7) | 0.080 (5) | −0.042 (7) | −0.010 (6) | −0.036 (5) |
C30 | 0.062 (4) | 0.056 (4) | 0.073 (4) | −0.004 (4) | 0.000 (4) | 0.016 (4) |
C31 | 0.048 (4) | 0.048 (3) | 0.078 (4) | −0.002 (3) | −0.002 (4) | 0.005 (3) |
C32 | 0.055 (4) | 0.068 (4) | 0.122 (6) | −0.003 (4) | −0.014 (4) | 0.000 (4) |
C33 | 0.093 (6) | 0.055 (4) | 0.166 (8) | 0.019 (5) | −0.022 (6) | −0.011 (5) |
C34 | 0.082 (6) | 0.068 (5) | 0.161 (8) | 0.000 (5) | −0.030 (6) | −0.038 (5) |
C35 | 0.083 (6) | 0.058 (4) | 0.140 (7) | 0.005 (4) | −0.042 (5) | −0.015 (5) |
C36 | 0.066 (5) | 0.061 (4) | 0.096 (5) | 0.009 (4) | −0.019 (4) | 0.003 (4) |
C37 | 0.107 (7) | 0.065 (5) | 0.088 (5) | 0.039 (5) | 0.029 (5) | 0.021 (5) |
C38 | 0.096 (7) | 0.132 (7) | 0.120 (7) | 0.062 (6) | 0.019 (5) | 0.022 (6) |
O1—C21 | 1.198 (8) | C16—H16A | 0.9600 |
O2—C21 | 1.337 (8) | C16—H16B | 0.9600 |
O2—C3 | 1.458 (7) | C16—H16C | 0.9600 |
O3—C37 | 1.355 (8) | C17—H17A | 0.9300 |
O3—C15 | 1.472 (7) | C17—H17B | 0.9300 |
O4—C37 | 1.187 (9) | C18—H18A | 0.9600 |
O5—C14 | 1.222 (7) | C18—H18B | 0.9600 |
O6—C30 | 1.336 (7) | C18—H18C | 0.9600 |
O6—C7 | 1.477 (6) | C19—H19A | 0.9600 |
O7—C30 | 1.216 (7) | C19—H19B | 0.9600 |
O8—C28 | 1.363 (8) | C19—H19C | 0.9600 |
O8—C5 | 1.456 (6) | C20—H20A | 0.9600 |
O9—C28 | 1.171 (9) | C20—H20B | 0.9600 |
C1—C2 | 1.536 (8) | C20—H20C | 0.9600 |
C1—C15 | 1.537 (8) | C21—C22 | 1.498 (10) |
C1—H1A | 0.9700 | C22—C23 | 1.353 (9) |
C1—H1B | 0.9700 | C22—C27 | 1.369 (11) |
C2—C3 | 1.491 (8) | C23—C24 | 1.391 (10) |
C2—C16 | 1.549 (8) | C23—H23 | 0.9300 |
C2—H2 | 0.9800 | C24—C25 | 1.333 (12) |
C3—C4 | 1.517 (7) | C24—H24 | 0.9300 |
C3—H3 | 0.9800 | C25—C26 | 1.385 (13) |
C4—C5 | 1.527 (7) | C25—H25 | 0.9300 |
C4—C15 | 1.570 (8) | C26—C27 | 1.412 (14) |
C4—H4 | 0.9800 | C26—H26 | 0.9300 |
C5—C6 | 1.520 (8) | C27—H27 | 0.9300 |
C5—H5 | 0.9800 | C28—C29 | 1.486 (10) |
C6—C17 | 1.317 (8) | C29—H29A | 0.9600 |
C6—C7 | 1.507 (8) | C29—H29B | 0.9600 |
C7—C8 | 1.518 (8) | C29—H29C | 0.9600 |
C7—H7 | 0.9800 | C30—C31 | 1.493 (8) |
C8—C9 | 1.503 (8) | C31—C36 | 1.371 (9) |
C8—H8A | 0.9700 | C31—C32 | 1.386 (8) |
C8—H8B | 0.9700 | C32—C33 | 1.373 (9) |
C9—C10 | 1.495 (10) | C32—H32 | 0.9300 |
C9—C11 | 1.528 (9) | C33—C34 | 1.379 (11) |
C9—H9 | 0.9800 | C33—H33 | 0.9300 |
C10—C19 | 1.516 (10) | C34—C35 | 1.361 (9) |
C10—C18 | 1.516 (9) | C34—H34 | 0.9300 |
C10—C11 | 1.540 (9) | C35—C36 | 1.370 (9) |
C11—C12 | 1.445 (8) | C35—H35 | 0.9300 |
C11—H11 | 0.9800 | C36—H36 | 0.9300 |
C12—C13 | 1.354 (8) | C37—C38 | 1.495 (12) |
C12—H12 | 0.9300 | C38—H38A | 0.9600 |
C13—C14 | 1.451 (9) | C38—H38B | 0.9600 |
C13—C20 | 1.510 (9) | C38—H38C | 0.9600 |
C14—C15 | 1.566 (9) | ||
C21—O2—C3 | 118.3 (5) | C2—C16—H16C | 109.5 |
C37—O3—C15 | 115.7 (6) | H16A—C16—H16C | 109.5 |
C30—O6—C7 | 116.8 (5) | H16B—C16—H16C | 109.5 |
C28—O8—C5 | 117.7 (5) | C6—C17—H17A | 120.0 |
C2—C1—C15 | 106.5 (5) | C6—C17—H17B | 120.0 |
C2—C1—H1A | 110.4 | H17A—C17—H17B | 120.0 |
C15—C1—H1A | 110.4 | C10—C18—H18A | 109.5 |
C2—C1—H1B | 110.4 | C10—C18—H18B | 109.5 |
C15—C1—H1B | 110.4 | H18A—C18—H18B | 109.5 |
H1A—C1—H1B | 108.6 | C10—C18—H18C | 109.5 |
C3—C2—C1 | 100.9 (5) | H18A—C18—H18C | 109.5 |
C3—C2—C16 | 116.8 (6) | H18B—C18—H18C | 109.5 |
C1—C2—C16 | 113.4 (6) | C10—C19—H19A | 109.5 |
C3—C2—H2 | 108.4 | C10—C19—H19B | 109.5 |
C1—C2—H2 | 108.4 | H19A—C19—H19B | 109.5 |
C16—C2—H2 | 108.4 | C10—C19—H19C | 109.5 |
O2—C3—C2 | 109.6 (5) | H19A—C19—H19C | 109.5 |
O2—C3—C4 | 109.7 (5) | H19B—C19—H19C | 109.5 |
C2—C3—C4 | 104.3 (5) | C13—C20—H20A | 109.5 |
O2—C3—H3 | 111.0 | C13—C20—H20B | 109.5 |
C2—C3—H3 | 111.0 | H20A—C20—H20B | 109.5 |
C4—C3—H3 | 111.0 | C13—C20—H20C | 109.5 |
C3—C4—C5 | 119.2 (5) | H20A—C20—H20C | 109.5 |
C3—C4—C15 | 102.7 (5) | H20B—C20—H20C | 109.5 |
C5—C4—C15 | 117.8 (4) | O1—C21—O2 | 124.4 (7) |
C3—C4—H4 | 105.3 | O1—C21—C22 | 124.0 (7) |
C5—C4—H4 | 105.3 | O2—C21—C22 | 111.6 (6) |
C15—C4—H4 | 105.3 | C23—C22—C27 | 119.8 (8) |
O8—C5—C6 | 107.2 (4) | C23—C22—C21 | 122.7 (7) |
O8—C5—C4 | 106.9 (4) | C27—C22—C21 | 117.4 (8) |
C6—C5—C4 | 117.5 (5) | C22—C23—C24 | 120.5 (8) |
O8—C5—H5 | 108.3 | C22—C23—H23 | 119.7 |
C6—C5—H5 | 108.3 | C24—C23—H23 | 119.7 |
C4—C5—H5 | 108.3 | C25—C24—C23 | 120.9 (9) |
C17—C6—C7 | 118.1 (6) | C25—C24—H24 | 119.6 |
C17—C6—C5 | 122.3 (6) | C23—C24—H24 | 119.6 |
C7—C6—C5 | 119.5 (5) | C24—C25—C26 | 120.0 (10) |
O6—C7—C6 | 110.0 (5) | C24—C25—H25 | 120.0 |
O6—C7—C8 | 105.9 (5) | C26—C25—H25 | 120.0 |
C6—C7—C8 | 117.1 (4) | C25—C26—C27 | 119.2 (10) |
O6—C7—H7 | 107.9 | C25—C26—H26 | 120.4 |
C6—C7—H7 | 107.9 | C27—C26—H26 | 120.4 |
C8—C7—H7 | 107.9 | C22—C27—C26 | 119.6 (9) |
C9—C8—C7 | 115.7 (5) | C22—C27—H27 | 120.2 |
C9—C8—H8A | 108.4 | C26—C27—H27 | 120.2 |
C7—C8—H8A | 108.4 | O9—C28—O8 | 122.8 (7) |
C9—C8—H8B | 108.4 | O9—C28—C29 | 126.3 (8) |
C7—C8—H8B | 108.4 | O8—C28—C29 | 110.8 (8) |
H8A—C8—H8B | 107.4 | C28—C29—H29A | 109.5 |
C10—C9—C8 | 124.7 (6) | C28—C29—H29B | 109.5 |
C10—C9—C11 | 61.3 (4) | H29A—C29—H29B | 109.5 |
C8—C9—C11 | 122.9 (5) | C28—C29—H29C | 109.5 |
C10—C9—H9 | 112.9 | H29A—C29—H29C | 109.5 |
C8—C9—H9 | 112.9 | H29B—C29—H29C | 109.5 |
C11—C9—H9 | 112.9 | O7—C30—O6 | 123.8 (6) |
C9—C10—C19 | 121.3 (6) | O7—C30—C31 | 124.2 (6) |
C9—C10—C18 | 116.1 (7) | O6—C30—C31 | 112.0 (6) |
C19—C10—C18 | 114.3 (7) | C36—C31—C32 | 119.2 (6) |
C9—C10—C11 | 60.4 (4) | C36—C31—C30 | 123.7 (6) |
C19—C10—C11 | 119.1 (6) | C32—C31—C30 | 117.1 (6) |
C18—C10—C11 | 115.1 (6) | C33—C32—C31 | 120.0 (7) |
C12—C11—C9 | 118.0 (5) | C33—C32—H32 | 120.0 |
C12—C11—C10 | 121.4 (6) | C31—C32—H32 | 120.0 |
C9—C11—C10 | 58.3 (4) | C32—C33—C34 | 120.1 (7) |
C12—C11—H11 | 115.6 | C32—C33—H33 | 120.0 |
C9—C11—H11 | 115.6 | C34—C33—H33 | 120.0 |
C10—C11—H11 | 115.6 | C35—C34—C33 | 119.6 (7) |
C13—C12—C11 | 127.8 (6) | C35—C34—H34 | 120.2 |
C13—C12—H12 | 116.1 | C33—C34—H34 | 120.2 |
C11—C12—H12 | 116.1 | C34—C35—C36 | 120.7 (7) |
C12—C13—C14 | 121.8 (6) | C34—C35—H35 | 119.6 |
C12—C13—C20 | 122.4 (6) | C36—C35—H35 | 119.6 |
C14—C13—C20 | 115.4 (6) | C35—C36—C31 | 120.3 (6) |
O5—C14—C13 | 119.4 (7) | C35—C36—H36 | 119.8 |
O5—C14—C15 | 113.9 (6) | C31—C36—H36 | 119.8 |
C13—C14—C15 | 126.2 (5) | O4—C37—O3 | 122.4 (8) |
O3—C15—C1 | 108.7 (5) | O4—C37—C38 | 127.7 (8) |
O3—C15—C14 | 112.8 (5) | O3—C37—C38 | 109.9 (8) |
C1—C15—C14 | 113.4 (5) | C37—C38—H38A | 109.5 |
O3—C15—C4 | 106.3 (5) | C37—C38—H38B | 109.5 |
C1—C15—C4 | 104.4 (5) | H38A—C38—H38B | 109.5 |
C14—C15—C4 | 110.7 (5) | C37—C38—H38C | 109.5 |
C2—C16—H16A | 109.5 | H38A—C38—H38C | 109.5 |
C2—C16—H16B | 109.5 | H38B—C38—H38C | 109.5 |
H16A—C16—H16B | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···O3 | 0.93 | 2.23 | 2.946 (8) | 134 |
C17—H17B···O9i | 0.93 | 2.39 | 3.222 (9) | 150 |
C19—H19A···O1ii | 0.96 | 2.54 | 3.427 (10) | 153 |
C35—H35···O5ii | 0.93 | 2.58 | 3.218 (9) | 126 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) x−1/2, −y+1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C38H42O9 |
Mr | 642.72 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 13.418 (6), 14.989 (4), 18.126 (5) |
V (Å3) | 3646 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.36 × 0.34 × 0.25 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3800, 3765, 1525 |
Rint | 0.006 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.171, 0.91 |
No. of reflections | 3765 |
No. of parameters | 436 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.18 |
Computer programs: DIFRAC (Gabe & White, 1993), NRCVAX (Gabe et al., 1989), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Frarrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···O3 | 0.93 | 2.23 | 2.946 (8) | 134 |
C17—H17B···O9i | 0.93 | 2.39 | 3.222 (9) | 150 |
C19—H19A···O1ii | 0.96 | 2.54 | 3.427 (10) | 153 |
C35—H35···O5ii | 0.93 | 2.58 | 3.218 (9) | 126 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+2; (ii) x−1/2, −y+1/2, −z+2. |
Euphorbia is the genus in the family Euphorbiaceae, and is widely distributed throughout the world. Many species of this genus are being used as traditional drugs in China such as Euphorbia Fischeriana Steud. and Euphorbia kansui L.. Plants belonging to Euphorbia are known to be rich sources of terpenoids, especially various diterpenoids. Previous chemical investigations on the seeds of Euphorbia lathyris were focused on lathyrol and ingenol diterpenoids (Bicchi, et al. 2001). As a part of our research on the chemical constituents from this medicine, the title compound was isolated. Its structure was elucidated by spectroscopic analysis and was confirmed by single-crystal X-ray diffraction analysis.
The title compound shows the tricyclic terpenoid skeleton of lathyrane (Fig. 1), consisting of fused five-, eleven- and three-membered rings (A: C1–C4/C15, B: C4–C9/C11–C15, C: C9–C11). Rings A and B are trans-joined (H4–C4–C15–O3 = -153.7°), while rings B and C are cis-joined (H9–C9–C11–H11 = 1.13°). Ring A adopts an envelope conformation, with atom C3 0.65 Å out of the plane defined by atoms C1/C2/C4/C15. Intra-molecular and inter-molecular weak C—H···O hydrogen bonding helps to stabilize the crystal structure (Table 1).