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ci2548 scheme

Acta Cryst. (2008). E64, o409    [ doi:10.1107/S1600536807068766 ]

2,2'-[2,3,5,6-Tetramethyl-p-phenylenebis(methylenethio)]bis(pyridine N-oxide)

B. Ravindran Durai Nayagam, S. R. Jebas, S. Grace and D. Schollmeyer

Abstract top

Molecules of the title compound, C22H24N2O2S2, lie across centres of inversion. The two thiopyridine N-oxide groups adopt a stepped trans configuration with respect to the benzene ring, by virtue of the symmetry. The oxopyridinium ring forms a dihedral angle of 79.9 (2)° with the benzene ring. The crystal structure is stabilized by a strong [pi]-[pi] interaction between the pyridinium rings of adjacent molecules [ring centroid-centroid distance = 3.464 (3) Å].

Comment top

N-Oxides and their derivatives show a broad spectrum of biological activity, such as antifungal, antibacterial, antimicrobial and antibiotic activities (Lobana & Bhatia, 1989; Symons et al., 1985). These compounds are also found to be involved in DNA strand scission under physiological conditions (Katsuyuki et al., 1991; Bovin et al., 1992). Pyridine N-oxides bearing a sulfur group in position 2 display significant antimicrobial activity (Leonard et al., 1955).

The asymmetric unit of the title compound consists of one half of a centrosymmetric molecule. The two thiopyridine-N-oxide groups adopt a stepped trans conformation with respect to the benzene ring, by virtue of the symmetry. The oxopyridinium ring forms a dihedral angle of 79.9 (2)° with the benzene ring. The N—O bond length is in good agreement with the mean value of 1.304 (15)Å reported in the literature for pyridine N-oxides (Allen et al., 1987). As observed in a similar structure (Hartung et al., 1996), the S atom is bent significantly towards the N-oxide O atom [N9—C8—S7 = 111.4 (3)°].

The crystal packing is stabilized by a strong π-π interaction between the pyridinium rings of adjacent molecules at (x, y, z) and (-x, 2 - y, -z), with a ring centroid to centroid distance of 3.464 (3) Å.

Related literature top

For bond-length data, see: Allen et al. (1987). For biological activities of N-oxides derivatives, see: Bovin et al. (1992); Katsuyuki et al. (1991); Leonard et al. (1955); Lobana & Bhatia (1989); Symons & West (1985). For a related structure, see: Hartung et al. (1996).

Experimental top

A mixture of 1,4-bis(bromomethyl)durene (0.320, 1 mmol) and 1-hydroxypyridine-2-thione sodium salt (0.298,2 mmol) in water (30 ml) and methanol (30 ml) was heated at 333 K with stirring for 30 min. The compound formed was filtered off, and dried (0.34 g, 82%). The compound was recrystallized from chloroform-methanol (1:2 v/v).

Refinement top

C-bound H atoms were placed in calculated positions [C—H = 0.95 Å (aromatic), 0.98 Å (methylene), and 0.99 Å (methyl)] and refined in the riding-model approximation, with Uiso(H)=1.2–1.5Ueq(C).

Computing details top

Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell refinement: CAD-4 EXPRESS (Enraf–Nonius, 1994); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids. Atoms labelled with the suffix a are generated by the symmetry operations (1 - x, 1 - y, 1 - z).
2,2'-[2,3,5,6-Tetramethyl-p-phenylenebis(methylenethio)]bis(pyridine N-oxide) top
Crystal data top
C22H24N2O2S2F000 = 436
Mr = 412.55Dx = 1.426 Mg m3
Monoclinic, P21/cCu Kα radiation
λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 11.8431 (13) Åθ = 15–29.3º
b = 9.0108 (9) ŵ = 2.68 mm1
c = 9.7551 (10) ÅT = 193 (2) K
β = 112.611 (9)ºBlock, colourless
V = 961.01 (17) Å30.10 × 0.10 × 0.05 mm
Z = 2
Data collection top
Enraf–Nonius CAD-4
diffractometer
θmax = 70º
ω/2θ scansθmin = 4.0º
Absorption correction: ψ scan
(North et al., 1968)
h = 14→13
Tmin = 0.80, Tmax = 0.87k = 0→10
1929 measured reflectionsl = 0→11
1813 independent reflections3 standard reflections
1200 reflections with I > 2σ(I) every 60 min
Rint = 0.077 intensity decay: 3%
Refinement top
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.1008P)2]
where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.057(Δ/σ)max < 0.001
wR(F2) = 0.170Δρmax = 0.42 e Å3
S = 0.99Δρmin = 0.41 e Å3
1813 reflectionsExtinction correction: none
129 parameters
Crystal data top
C22H24N2O2S2V = 961.01 (17) Å3
Mr = 412.55Z = 2
Monoclinic, P21/cCu Kα
a = 11.8431 (13) ŵ = 2.68 mm1
b = 9.0108 (9) ÅT = 193 (2) K
c = 9.7551 (10) Å0.10 × 0.10 × 0.05 mm
β = 112.611 (9)º
Data collection top
Enraf–Nonius CAD-4
diffractometer
1200 reflections with I > 2σ(I)
Absorption correction: ψ scan
(North et al., 1968)
Rint = 0.077
Tmin = 0.80, Tmax = 0.873 standard reflections
1929 measured reflections every 60 min
1813 independent reflections intensity decay: 3%
Refinement top
R[F2 > 2σ(F2)] = 0.057129 parameters
wR(F2) = 0.170H-atom parameters constrained
S = 0.99Δρmax = 0.42 e Å3
1813 reflectionsΔρmin = 0.41 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C10.4444 (3)0.6186 (4)0.4063 (4)0.0220 (8)
C20.5351 (3)0.6459 (4)0.5463 (4)0.0234 (8)
C30.4077 (3)0.4715 (4)0.3606 (4)0.0243 (8)
C40.5706 (4)0.8042 (4)0.5965 (4)0.0305 (9)
H4A0.50490.87140.53740.046*
H4B0.6460.82990.5830.046*
H4C0.58380.81360.70170.046*
C50.3044 (4)0.4452 (4)0.2124 (4)0.0347 (10)
H5A0.24280.52330.19420.052*
H5B0.2670.34840.21320.052*
H5C0.33650.4470.13360.052*
C60.3835 (3)0.7458 (4)0.3017 (4)0.0258 (8)
H6A0.35280.71140.19730.031*
H6B0.44290.8270.31380.031*
S70.25697 (9)0.81142 (11)0.34802 (10)0.0290 (3)
C80.1962 (3)0.9526 (4)0.2167 (4)0.0254 (8)
N90.1042 (3)1.0262 (4)0.2392 (4)0.0293 (7)
C100.0488 (4)1.1435 (4)0.1524 (5)0.0340 (10)
H100.01231.19690.17250.041*
C110.0792 (4)1.1863 (4)0.0363 (5)0.0347 (9)
H110.03941.26830.02420.042*
C120.1688 (4)1.1083 (5)0.0083 (5)0.0358 (10)
H120.18891.13460.07390.043*
C130.2287 (4)0.9925 (4)0.0998 (4)0.0287 (9)
H130.29180.94050.08260.034*
O140.0730 (3)0.9825 (4)0.3471 (3)0.0443 (8)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C10.032 (2)0.0160 (17)0.0218 (18)0.0012 (15)0.0144 (16)0.0009 (14)
C20.0280 (19)0.0172 (17)0.0262 (19)0.0026 (14)0.0117 (15)0.0053 (15)
C30.0294 (19)0.0227 (19)0.0217 (17)0.0043 (15)0.0106 (15)0.0028 (15)
C40.038 (2)0.0189 (19)0.033 (2)0.0065 (17)0.0124 (18)0.0023 (17)
C50.044 (2)0.025 (2)0.031 (2)0.0021 (19)0.0101 (19)0.0028 (18)
C60.0303 (19)0.0221 (17)0.026 (2)0.0011 (16)0.0116 (16)0.0001 (16)
S70.0373 (5)0.0247 (5)0.0282 (5)0.0039 (4)0.0160 (4)0.0041 (4)
C80.028 (2)0.0183 (18)0.0265 (19)0.0018 (15)0.0065 (16)0.0063 (15)
N90.0308 (17)0.0260 (17)0.0300 (17)0.0000 (14)0.0102 (14)0.0034 (14)
C100.030 (2)0.025 (2)0.038 (2)0.0035 (16)0.0031 (18)0.0069 (18)
C110.035 (2)0.0224 (19)0.037 (2)0.0048 (18)0.0027 (17)0.0011 (19)
C120.039 (2)0.031 (2)0.034 (2)0.0059 (18)0.0102 (18)0.0004 (18)
C130.035 (2)0.0233 (19)0.0249 (19)0.0011 (16)0.0086 (17)0.0008 (16)
O140.055 (2)0.0477 (19)0.0421 (18)0.0125 (16)0.0316 (16)0.0064 (15)
Geometric parameters (Å, °) top
C1—C21.398 (5)C11—C121.384 (6)
C1—C31.412 (5)C12—C131.379 (6)
C1—C61.520 (5)C4—H4A0.98
C2—C3i1.389 (5)C4—H4B0.98
C2—C41.514 (5)C4—H4C0.98
C3—C2i1.389 (5)C5—H5A0.98
C3—C51.511 (5)C5—H5B0.98
C6—S71.822 (4)C5—H5C0.98
S7—C81.752 (4)C6—H6A0.99
C8—N91.364 (5)C6—H6B0.99
C8—C131.384 (5)C10—H100.95
N9—O141.303 (4)C11—H110.95
N9—C101.355 (5)C12—H120.95
C10—C111.369 (6)C13—H130.95
C2—C1—C3120.1 (3)C2—C4—H4C109
C2—C1—C6120.8 (3)H4A—C4—H4B109
C3—C1—C6119.2 (3)H4A—C4—H4C109
C3i—C2—C1120.2 (3)H4B—C4—H4C109
C3i—C2—C4120.1 (3)C3—C5—H5A109
C1—C2—C4119.7 (3)C3—C5—H5B110
C2i—C3—C1119.7 (3)C3—C5—H5C109
C2i—C3—C5121.2 (3)H5A—C5—H5B109
C1—C3—C5119.1 (3)H5A—C5—H5C109
C1—C6—S7107.5 (2)H5B—C5—H5C110
C8—S7—C6101.51 (18)S7—C6—H6A110
N9—C8—C13119.9 (4)S7—C6—H6B110
N9—C8—S7111.4 (3)C1—C6—H6A110
C13—C8—S7128.7 (3)C1—C6—H6B110
O14—N9—C10121.4 (4)H6A—C6—H6B108
O14—N9—C8118.4 (3)N9—C10—H10119
C10—N9—C8120.2 (4)C11—C10—H10119
N9—C10—C11121.2 (4)C10—C11—H11120
C10—C11—C12119.1 (4)C12—C11—H11120
C13—C12—C11119.9 (4)C11—C12—H12120
C12—C13—C8119.6 (4)C13—C12—H12120
C2—C4—H4A109C8—C13—H13120
C2—C4—H4B109C12—C13—H13120
C3—C1—C2—C3i2.0 (6)C6—S7—C8—C135.8 (4)
C6—C1—C2—C3i178.3 (3)C13—C8—N9—O14177.6 (3)
C3—C1—C2—C4177.7 (3)S7—C8—N9—O141.6 (4)
C6—C1—C2—C41.9 (5)C13—C8—N9—C103.5 (5)
C2—C1—C3—C2i2.0 (6)S7—C8—N9—C10177.3 (3)
C6—C1—C3—C2i178.3 (3)O14—N9—C10—C11177.9 (4)
C2—C1—C3—C5176.5 (3)C8—N9—C10—C113.2 (6)
C6—C1—C3—C53.1 (5)N9—C10—C11—C120.4 (6)
C2—C1—C6—S786.0 (4)C10—C11—C12—C132.1 (6)
C3—C1—C6—S793.6 (4)C11—C12—C13—C81.8 (6)
C1—C6—S7—C8178.8 (2)N9—C8—C13—C121.0 (6)
C6—S7—C8—N9175.2 (3)S7—C8—C13—C12180.0 (3)
Symmetry codes: (i) −x+1, −y+1, −z+1.
references
References top

Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.

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Enraf–Nonius (1994). CAD-4 EXPRESS. Enraf–Nonius, Delft, The Netherlands.

Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565–?.

Harms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany.

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Leonard, F., Barklay, F. A., Brown, E. V., Anderson, F. E. & Green, D. M. (1955). Antibiot. Chemother. pp. 261–264.

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North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.

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Symons, M. C. R. & West, D.-X. (1985). J. Chem. Soc. Daltan Trans. pp. 379–381.