
Acta Cryst. (2008). E64, o714 [ doi:10.1107/S1600536808006387 ]
-L-rhamnopyranoside hemihydrateThe absolute configuration of the title compound, C12H15NO7·0.5H2O, was assigned from the synthesis. There are two rhamnoside molecules and one water molecule in the asymmetric unit, displaying O-H
O hydrogen bonding. One of the nitro groups does not conjugate efficiently with the benzene ring.
Para-nitrophenyl-α-L-rhamnoside (3) was obtained upon one-pot reaction combined with glycosylation and deacetylation, using 10%NaOH aqueous and cetyl alkyl trimethyl ammonium bromide from 2,3,4-tri-O-acetyl-α-L-rhamnosyl chloride and para-nitrophenol. A yield of 37% of the title compound was obtained after purification by flash column chromatography on silica gel with petroleum ether–ethyl acetate (1:3) as solvent. The compound was then recrystallized via solvent evaporation (ethanol) at room temperature, appearing as colorless blocks. Analysis: Mp: 179–180°C, [α]D 20 -158.7° (c 1.0, EtOH) Rf 0.49 (dichloromethane/ methanol, 8:1, silica-gel plate 60 F254); 1H-NMR (CD3OD, 500 MHz, p.p.m.): δ 8.22(2H, aromatic H), 7.25(2H, aromatic H), 5.60(d, 1H, J1, 2=2 Hz, H-1), 4.03(m, 1H, H-2), 3.84(dd, 1H, H-3), 3.56–3.36(m, 2H, H-4, H-5), 1.22(d, 3H, CH3); 13 C-NMR (125 MHz, CD3OD): δ 150.83, 141.85, 124.75, 115.62(aromatic C), 98.01(C-1), 71.62, 70.15, 69.75, 69.34(C-2, C-3, C-4, C-5), 16.07(C-6).
In the absence of any significant anomalous scattering, the Flack (1983) parameter was indeterminable (Flack & Bernardinelli, 2000). Hence, the Friedel equivalents were merged prior to the final refinements, and the absolute structure was set by reference to the known chirality of the enantiopure starting sugar employed.
Data collection: SMART (Bruker, 2003); cell refinement: SMART (Bruker, 2003); data reduction: SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
| C12H15NO7·0.5H2O | F000 = 620 |
| Mr = 294.26 | Dx = 1.435 Mg m−3 |
| Monoclinic, P21 | Melting point: 453 K |
| Hall symbol: P 2yb | Mo Kα radiation λ = 0.71073 Å |
| a = 10.6189 (10) Å | Cell parameters from 3190 reflections |
| b = 6.9002 (7) Å | θ = 4.8–5.7º |
| c = 18.9318 (18) Å | µ = 0.12 mm−1 |
| β = 100.909 (2)º | T = 293 (2) K |
| V = 1362.1 (2) Å3 | Prismatic, colourless |
| Z = 4 | 0.51 × 0.49 × 0.31 mm |
| Bruker SMART CCD area-detector diffractometer | 3220 independent reflections |
| Radiation source: fine-focus sealed tube | 2745 reflections with I > 2σ(I) |
| Monochromator: graphite | Rint = 0.087 |
| T = 293(2) K | θmax = 27.0º |
| φ and ω scans | θmin = 2.0º |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→13 |
| Tmin = 0.802, Tmax = 1.000 | k = −8→7 |
| 8073 measured reflections | l = −23→24 |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.042 | w = 1/[σ2(Fo2) + (0.037P)2] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.092 | (Δ/σ)max = 0.004 |
| S = 0.97 | Δρmax = 0.20 e Å−3 |
| 3220 reflections | Δρmin = −0.21 e Å−3 |
| 405 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 12 restraints | Extinction coefficient: 0.0202 (19) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983) |
| Secondary atom site location: difference Fourier map |
| C12H15NO7·0.5H2O | V = 1362.1 (2) Å3 |
| Mr = 294.26 | Z = 4 |
| Monoclinic, P21 | Mo Kα |
| a = 10.6189 (10) Å | µ = 0.12 mm−1 |
| b = 6.9002 (7) Å | T = 293 (2) K |
| c = 18.9318 (18) Å | 0.51 × 0.49 × 0.31 mm |
| β = 100.909 (2)º |
| Bruker SMART CCD area-detector diffractometer | 3220 independent reflections |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2745 reflections with I > 2σ(I) |
| Tmin = 0.802, Tmax = 1.000 | Rint = 0.087 |
| 8073 measured reflections |
| R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.092 | Δρmax = 0.20 e Å−3 |
| S = 0.97 | Δρmin = −0.21 e Å−3 |
| 3220 reflections | Absolute structure: Flack (1983) |
| 405 parameters | Flack parameter: ? |
| 12 restraints |
Experimental. Para-nitrophenyl-α-L-rhamnoside(3) was obtained upon one-pot reaction combined with glycosylation and deacetylation, using 10% NaOH aqueous and cetyl alkyl trimethyl ammonium bromide from 2,3,4-tri-O-acetyl-α-L-rhamnosyl chloride and para-nitrophenol. A yield of 37% of the title compound was obtained after purification by flash column chromatography on silica gel with Petroleum ether – Ethyl acetate (1:3) as solvent. The compound was then recrystallized via solvent evaporation (ethanol) at room temperature, appearing as colorless blocks. Analysis: Rf 0.49 (Dichloromethane/ methanol, 8:1, silica-gel plate 60 F254); 1H-NMR (CD3OD, 500 MHz, p.p.m.): δ 8.22(2H, aromatic H), 7.25(2H, aromatic H), 5.60(d, 1H, J1, 2=2 Hz, H-1), 4.03(m, 1H, H-2), 3.84(dd, 1H, H-3), 3.56–3.36(m, 2H, H-4, H-5), 1.22(d, 3H, CH3); 13 C-NMR (125 MHz, CD3OD): δ 150.83, 141.85, 124.75, 115.62(aromatic C), 98.01(C-1), 71.62, 70.15, 69.75, 69.34(C-2, C-3, C-4, C-5), 16.07(C-6). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R– factors based on ALL data will be even larger. |
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.19455 (17) | 1.0324 (2) | 0.33890 (9) | 0.0398 (4) | |
| O2 | 0.1174 (2) | 0.9293 (3) | 0.47272 (10) | 0.0457 (5) | |
| O3 | 0.33922 (18) | 0.7408 (3) | 0.52541 (9) | 0.0415 (4) | |
| O4 | 0.51029 (17) | 0.9318 (3) | 0.44976 (10) | 0.0411 (4) | |
| O5 | 0.16218 (18) | 0.7063 (2) | 0.30768 (9) | 0.0425 (4) | |
| O6 | 0.0339 (3) | 0.8596 (5) | −0.02333 (13) | 0.0908 (9) | |
| O7 | 0.1729 (2) | 0.6342 (4) | −0.01726 (11) | 0.0666 (7) | |
| O8 | 0.82087 (17) | 0.6288 (2) | 0.22589 (9) | 0.0403 (4) | |
| O9 | 0.7702 (2) | 0.8782 (3) | 0.33951 (12) | 0.0528 (6) | |
| O10 | 0.6155 (2) | 0.6111 (3) | 0.39139 (10) | 0.0482 (5) | |
| O11 | 0.7502 (2) | 0.2697 (2) | 0.35244 (11) | 0.0468 (5) | |
| O12 | 0.60585 (18) | 0.6789 (3) | 0.17194 (10) | 0.0471 (5) | |
| O13 | 0.4597 (3) | 0.6372 (5) | −0.16104 (13) | 0.0842 (8) | |
| O14 | 0.6635 (3) | 0.6568 (6) | −0.14965 (14) | 0.1026 (11) | |
| O15 | 0.8807 (2) | 0.8258 (3) | 0.49102 (14) | 0.0577 (6) | |
| N1 | 0.1080 (2) | 0.7455 (4) | 0.01055 (13) | 0.0540 (7) | |
| N2 | 0.5671 (3) | 0.6494 (4) | −0.12425 (14) | 0.0606 (7) | |
| C1 | 0.1293 (2) | 0.8625 (4) | 0.34999 (14) | 0.0378 (6) | |
| H1 | 0.0367 | 0.8859 | 0.3373 | 0.045* | |
| C2 | 0.1625 (2) | 0.7922 (4) | 0.42766 (14) | 0.0358 (5) | |
| H2 | 0.1225 | 0.6659 | 0.4321 | 0.043* | |
| C3 | 0.3070 (2) | 0.7757 (4) | 0.45007 (12) | 0.0331 (5) | |
| H3 | 0.3366 | 0.6660 | 0.4247 | 0.040* | |
| C4 | 0.3743 (2) | 0.9566 (4) | 0.43259 (12) | 0.0312 (5) | |
| H4 | 0.3514 | 1.0619 | 0.4625 | 0.037* | |
| C5 | 0.3317 (2) | 1.0148 (4) | 0.35410 (13) | 0.0361 (6) | |
| H5 | 0.3574 | 0.9137 | 0.3233 | 0.043* | |
| C6 | 0.3851 (3) | 1.2050 (5) | 0.33591 (17) | 0.0627 (9) | |
| H6A | 0.3556 | 1.2323 | 0.2858 | 0.094* | |
| H6B | 0.4771 | 1.1991 | 0.3460 | 0.094* | |
| H6C | 0.3569 | 1.3056 | 0.3643 | 0.094* | |
| C7 | 0.1446 (2) | 0.7275 (4) | 0.23480 (13) | 0.0380 (6) | |
| C8 | 0.0812 (3) | 0.8810 (4) | 0.19674 (15) | 0.0483 (7) | |
| H8 | 0.0478 | 0.9806 | 0.2207 | 0.058* | |
| C9 | 0.0680 (3) | 0.8846 (5) | 0.12280 (16) | 0.0511 (7) | |
| H9 | 0.0243 | 0.9858 | 0.0964 | 0.061* | |
| C10 | 0.1192 (3) | 0.7394 (4) | 0.08867 (14) | 0.0443 (6) | |
| C11 | 0.1813 (3) | 0.5855 (5) | 0.12565 (15) | 0.0496 (7) | |
| H11 | 0.2150 | 0.4869 | 0.1013 | 0.060* | |
| C12 | 0.1930 (3) | 0.5790 (4) | 0.19884 (15) | 0.0487 (7) | |
| H12 | 0.2336 | 0.4743 | 0.2245 | 0.058* | |
| C13 | 0.7158 (2) | 0.7509 (4) | 0.21975 (14) | 0.0393 (6) | |
| H13 | 0.7388 | 0.8774 | 0.2023 | 0.047* | |
| C14 | 0.6727 (3) | 0.7788 (4) | 0.29176 (14) | 0.0408 (6) | |
| H14 | 0.5930 | 0.8540 | 0.2846 | 0.049* | |
| C15 | 0.6516 (2) | 0.5824 (4) | 0.32289 (13) | 0.0358 (5) | |
| H15 | 0.5806 | 0.5181 | 0.2908 | 0.043* | |
| C16 | 0.7705 (3) | 0.4593 (3) | 0.32767 (13) | 0.0354 (5) | |
| H16 | 0.8422 | 0.5205 | 0.3603 | 0.042* | |
| C17 | 0.8030 (3) | 0.4388 (4) | 0.25371 (14) | 0.0396 (6) | |
| H17 | 0.7318 | 0.3744 | 0.2218 | 0.047* | |
| C18 | 0.9237 (3) | 0.3276 (5) | 0.2535 (2) | 0.0662 (10) | |
| H18A | 0.9419 | 0.3265 | 0.2057 | 0.099* | |
| H18B | 0.9132 | 0.1970 | 0.2688 | 0.099* | |
| H18C | 0.9933 | 0.3879 | 0.2857 | 0.099* | |
| C19 | 0.6052 (3) | 0.6749 (4) | 0.09986 (14) | 0.0413 (6) | |
| C20 | 0.4846 (3) | 0.6600 (4) | 0.05670 (15) | 0.0466 (6) | |
| H20 | 0.4122 | 0.6551 | 0.0776 | 0.056* | |
| C21 | 0.4716 (3) | 0.6523 (4) | −0.01641 (15) | 0.0491 (7) | |
| H21 | 0.3908 | 0.6428 | −0.0455 | 0.059* | |
| C22 | 0.5802 (3) | 0.6590 (4) | −0.04625 (15) | 0.0473 (7) | |
| C23 | 0.7006 (3) | 0.6735 (5) | −0.00431 (16) | 0.0505 (7) | |
| H23 | 0.7725 | 0.6778 | −0.0256 | 0.061* | |
| C24 | 0.7141 (3) | 0.6817 (5) | 0.06912 (16) | 0.0497 (7) | |
| H24 | 0.7950 | 0.6916 | 0.0980 | 0.060* | |
| H10 | 0.617 (4) | 0.501 (3) | 0.4090 (18) | 0.074 (12)* | |
| H2A | 0.038 (4) | 0.906 (6) | 0.476 (2) | 0.081 (12)* | |
| H3A | 0.389 (3) | 0.639 (5) | 0.5343 (16) | 0.052 (9)* | |
| H4A | 0.530 (3) | 0.830 (4) | 0.4316 (18) | 0.062 (10)* | |
| H9A | 0.753 (3) | 0.991 (5) | 0.3344 (17) | 0.053 (10)* | |
| H11A | 0.743 (3) | 0.284 (5) | 0.3943 (11) | 0.056 (9)* | |
| H15A | 0.835 (5) | 0.829 (8) | 0.4467 (15) | 0.124 (19)* | |
| H15B | 0.873 (5) | 0.708 (4) | 0.507 (3) | 0.108 (17)* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0446 (10) | 0.0357 (9) | 0.0357 (9) | 0.0069 (8) | −0.0009 (8) | 0.0013 (7) |
| O2 | 0.0424 (11) | 0.0504 (11) | 0.0482 (11) | −0.0037 (9) | 0.0185 (9) | −0.0139 (9) |
| O3 | 0.0527 (11) | 0.0429 (11) | 0.0291 (9) | 0.0109 (9) | 0.0084 (7) | 0.0060 (8) |
| O4 | 0.0327 (9) | 0.0420 (11) | 0.0469 (11) | 0.0014 (8) | 0.0034 (8) | −0.0095 (9) |
| O5 | 0.0499 (10) | 0.0408 (10) | 0.0334 (9) | 0.0045 (8) | −0.0005 (8) | −0.0050 (8) |
| O6 | 0.106 (2) | 0.120 (2) | 0.0416 (13) | 0.0504 (19) | 0.0000 (13) | 0.0104 (15) |
| O7 | 0.0579 (13) | 0.0952 (18) | 0.0489 (12) | 0.0037 (13) | 0.0159 (10) | −0.0109 (13) |
| O8 | 0.0423 (10) | 0.0368 (10) | 0.0447 (10) | −0.0003 (8) | 0.0162 (7) | 0.0064 (8) |
| O9 | 0.0800 (16) | 0.0245 (10) | 0.0513 (12) | 0.0015 (10) | 0.0053 (11) | −0.0015 (9) |
| O10 | 0.0726 (13) | 0.0375 (11) | 0.0408 (11) | 0.0125 (10) | 0.0268 (9) | 0.0006 (9) |
| O11 | 0.0786 (14) | 0.0260 (9) | 0.0419 (11) | 0.0029 (9) | 0.0274 (10) | 0.0003 (8) |
| O12 | 0.0444 (10) | 0.0567 (12) | 0.0417 (10) | −0.0047 (9) | 0.0121 (8) | 0.0030 (9) |
| O13 | 0.0877 (19) | 0.104 (2) | 0.0528 (14) | −0.0079 (17) | −0.0082 (13) | −0.0063 (14) |
| O14 | 0.099 (2) | 0.143 (3) | 0.0490 (14) | −0.013 (2) | 0.0223 (14) | −0.0026 (18) |
| O15 | 0.0538 (13) | 0.0506 (14) | 0.0698 (16) | −0.0070 (10) | 0.0146 (11) | 0.0015 (12) |
| N1 | 0.0492 (14) | 0.0716 (18) | 0.0410 (13) | −0.0021 (14) | 0.0081 (11) | −0.0081 (13) |
| N2 | 0.0780 (19) | 0.0592 (17) | 0.0447 (14) | −0.0011 (15) | 0.0115 (14) | −0.0001 (13) |
| C1 | 0.0326 (13) | 0.0405 (14) | 0.0383 (14) | 0.0026 (11) | 0.0020 (10) | −0.0061 (11) |
| C2 | 0.0390 (13) | 0.0328 (12) | 0.0369 (13) | −0.0028 (11) | 0.0106 (10) | −0.0042 (10) |
| C3 | 0.0416 (13) | 0.0326 (12) | 0.0255 (11) | 0.0045 (10) | 0.0073 (9) | −0.0017 (9) |
| C4 | 0.0357 (12) | 0.0309 (11) | 0.0269 (11) | 0.0042 (10) | 0.0058 (9) | −0.0040 (10) |
| C5 | 0.0388 (14) | 0.0389 (13) | 0.0300 (12) | −0.0003 (11) | 0.0050 (10) | −0.0008 (10) |
| C6 | 0.072 (2) | 0.062 (2) | 0.0493 (18) | −0.0159 (17) | 0.0014 (15) | 0.0200 (15) |
| C7 | 0.0358 (12) | 0.0406 (14) | 0.0353 (13) | −0.0038 (11) | 0.0005 (10) | −0.0071 (11) |
| C8 | 0.0514 (17) | 0.0513 (16) | 0.0401 (15) | 0.0151 (13) | 0.0032 (12) | −0.0059 (13) |
| C9 | 0.0509 (17) | 0.0573 (18) | 0.0412 (15) | 0.0139 (14) | −0.0008 (12) | −0.0010 (13) |
| C10 | 0.0366 (13) | 0.0590 (18) | 0.0348 (13) | −0.0037 (13) | 0.0005 (10) | −0.0077 (13) |
| C11 | 0.0507 (16) | 0.0540 (17) | 0.0442 (15) | 0.0076 (14) | 0.0091 (12) | −0.0118 (14) |
| C12 | 0.0539 (17) | 0.0430 (16) | 0.0459 (16) | 0.0101 (13) | 0.0007 (12) | −0.0029 (13) |
| C13 | 0.0421 (14) | 0.0354 (13) | 0.0408 (14) | 0.0015 (11) | 0.0089 (11) | 0.0062 (11) |
| C14 | 0.0502 (15) | 0.0343 (13) | 0.0389 (14) | 0.0081 (12) | 0.0109 (11) | 0.0037 (11) |
| C15 | 0.0432 (14) | 0.0338 (13) | 0.0323 (12) | 0.0020 (11) | 0.0119 (10) | −0.0033 (10) |
| C16 | 0.0475 (15) | 0.0235 (11) | 0.0367 (13) | 0.0017 (10) | 0.0119 (10) | −0.0020 (10) |
| C17 | 0.0478 (15) | 0.0318 (13) | 0.0437 (14) | 0.0003 (12) | 0.0201 (12) | −0.0017 (11) |
| C18 | 0.074 (2) | 0.0503 (19) | 0.086 (3) | 0.0198 (17) | 0.0460 (19) | 0.0148 (17) |
| C19 | 0.0458 (14) | 0.0382 (14) | 0.0411 (14) | −0.0006 (12) | 0.0115 (11) | 0.0042 (12) |
| C20 | 0.0394 (14) | 0.0477 (16) | 0.0538 (17) | −0.0025 (12) | 0.0113 (12) | −0.0008 (13) |
| C21 | 0.0503 (16) | 0.0457 (16) | 0.0484 (17) | −0.0041 (13) | 0.0019 (13) | −0.0022 (13) |
| C22 | 0.0608 (17) | 0.0393 (15) | 0.0409 (15) | −0.0055 (13) | 0.0072 (13) | 0.0002 (12) |
| C23 | 0.0504 (16) | 0.0579 (18) | 0.0456 (15) | −0.0014 (14) | 0.0151 (13) | 0.0103 (14) |
| C24 | 0.0417 (14) | 0.0628 (18) | 0.0443 (15) | −0.0049 (14) | 0.0075 (12) | 0.0069 (14) |
| O1—C1 | 1.398 (3) | C5—H5 | 0.9800 |
| O1—C5 | 1.435 (3) | C6—H6A | 0.9600 |
| O2—C2 | 1.417 (3) | C6—H6B | 0.9600 |
| O2—H2A | 0.87 (4) | C6—H6C | 0.9600 |
| O3—C3 | 1.423 (3) | C7—C12 | 1.382 (4) |
| O3—H3A | 0.87 (4) | C7—C8 | 1.382 (4) |
| O4—C4 | 1.430 (3) | C8—C9 | 1.380 (4) |
| O4—H4A | 0.829 (19) | C8—H8 | 0.9300 |
| O5—C7 | 1.365 (3) | C9—C10 | 1.360 (4) |
| O5—C1 | 1.425 (3) | C9—H9 | 0.9300 |
| O6—N1 | 1.208 (4) | C10—C11 | 1.370 (4) |
| O7—N1 | 1.216 (3) | C11—C12 | 1.368 (4) |
| O8—C13 | 1.385 (3) | C11—H11 | 0.9300 |
| O8—C17 | 1.439 (3) | C12—H12 | 0.9300 |
| O9—C14 | 1.416 (4) | C13—C14 | 1.530 (4) |
| O9—H9A | 0.80 (4) | C13—H13 | 0.9800 |
| O10—C15 | 1.434 (3) | C14—C15 | 1.512 (4) |
| O10—H10 | 0.828 (19) | C14—H14 | 0.9800 |
| O11—C16 | 1.420 (3) | C15—C16 | 1.510 (4) |
| O11—H11A | 0.816 (19) | C15—H15 | 0.9800 |
| O12—C19 | 1.363 (3) | C16—C17 | 1.511 (4) |
| O12—C13 | 1.425 (3) | C16—H16 | 0.9800 |
| O13—N2 | 1.221 (4) | C17—C18 | 1.494 (4) |
| O14—N2 | 1.211 (4) | C17—H17 | 0.9800 |
| O15—H15A | 0.89 (2) | C18—H18A | 0.9600 |
| O15—H15B | 0.88 (2) | C18—H18B | 0.9600 |
| N1—C10 | 1.462 (3) | C18—H18C | 0.9600 |
| N2—C22 | 1.458 (4) | C19—C20 | 1.387 (4) |
| C1—C2 | 1.525 (4) | C19—C24 | 1.390 (4) |
| C1—H1 | 0.9800 | C20—C21 | 1.366 (4) |
| C2—C3 | 1.517 (3) | C20—H20 | 0.9300 |
| C2—H2 | 0.9800 | C21—C22 | 1.378 (4) |
| C3—C4 | 1.506 (3) | C21—H21 | 0.9300 |
| C3—H3 | 0.9800 | C22—C23 | 1.375 (4) |
| C4—C5 | 1.523 (3) | C23—C24 | 1.371 (4) |
| C4—H4 | 0.9800 | C23—H23 | 0.9300 |
| C5—C6 | 1.495 (4) | C24—H24 | 0.9300 |
| C1—O1—C5 | 114.34 (18) | C9—C10—N1 | 119.7 (3) |
| C2—O2—H2A | 111 (3) | C11—C10—N1 | 118.6 (3) |
| C3—O3—H3A | 111 (2) | C12—C11—C10 | 119.1 (3) |
| C4—O4—H4A | 110 (2) | C12—C11—H11 | 120.5 |
| C7—O5—C1 | 119.09 (19) | C10—C11—H11 | 120.5 |
| C13—O8—C17 | 115.16 (19) | C11—C12—C7 | 120.2 (3) |
| C14—O9—H9A | 106 (2) | C11—C12—H12 | 119.9 |
| C15—O10—H10 | 104 (3) | C7—C12—H12 | 119.9 |
| C16—O11—H11A | 105 (2) | O8—C13—O12 | 113.1 (2) |
| C19—O12—C13 | 119.4 (2) | O8—C13—C14 | 111.9 (2) |
| H15A—O15—H15B | 107 (5) | O12—C13—C14 | 105.2 (2) |
| O6—N1—O7 | 123.2 (3) | O8—C13—H13 | 108.8 |
| O6—N1—C10 | 118.4 (3) | O12—C13—H13 | 108.8 |
| O7—N1—C10 | 118.4 (3) | C14—C13—H13 | 108.8 |
| O14—N2—O13 | 123.0 (3) | O9—C14—C15 | 109.3 (2) |
| O14—N2—C22 | 118.3 (3) | O9—C14—C13 | 108.9 (2) |
| O13—N2—C22 | 118.7 (3) | C15—C14—C13 | 109.0 (2) |
| O1—C1—O5 | 111.6 (2) | O9—C14—H14 | 109.9 |
| O1—C1—C2 | 112.4 (2) | C15—C14—H14 | 109.9 |
| O5—C1—C2 | 105.4 (2) | C13—C14—H14 | 109.9 |
| O1—C1—H1 | 109.1 | O10—C15—C16 | 112.8 (2) |
| O5—C1—H1 | 109.1 | O10—C15—C14 | 108.3 (2) |
| C2—C1—H1 | 109.1 | C16—C15—C14 | 110.1 (2) |
| O2—C2—C3 | 108.7 (2) | O10—C15—H15 | 108.5 |
| O2—C2—C1 | 109.0 (2) | C16—C15—H15 | 108.5 |
| C3—C2—C1 | 109.3 (2) | C14—C15—H15 | 108.5 |
| O2—C2—H2 | 109.9 | O11—C16—C15 | 111.1 (2) |
| C3—C2—H2 | 109.9 | O11—C16—C17 | 107.17 (19) |
| C1—C2—H2 | 109.9 | C15—C16—C17 | 109.4 (2) |
| O3—C3—C4 | 109.06 (19) | O11—C16—H16 | 109.7 |
| O3—C3—C2 | 109.38 (19) | C15—C16—H16 | 109.7 |
| C4—C3—C2 | 111.9 (2) | C17—C16—H16 | 109.7 |
| O3—C3—H3 | 108.8 | O8—C17—C18 | 107.1 (2) |
| C4—C3—H3 | 108.8 | O8—C17—C16 | 108.83 (19) |
| C2—C3—H3 | 108.8 | C18—C17—C16 | 113.4 (2) |
| O4—C4—C3 | 110.61 (19) | O8—C17—H17 | 109.1 |
| O4—C4—C5 | 110.74 (19) | C18—C17—H17 | 109.1 |
| C3—C4—C5 | 111.57 (19) | C16—C17—H17 | 109.1 |
| O4—C4—H4 | 107.9 | C17—C18—H18A | 109.5 |
| C3—C4—H4 | 107.9 | C17—C18—H18B | 109.5 |
| C5—C4—H4 | 107.9 | H18A—C18—H18B | 109.5 |
| O1—C5—C6 | 107.1 (2) | C17—C18—H18C | 109.5 |
| O1—C5—C4 | 108.70 (19) | H18A—C18—H18C | 109.5 |
| C6—C5—C4 | 113.6 (2) | H18B—C18—H18C | 109.5 |
| O1—C5—H5 | 109.1 | O12—C19—C20 | 114.9 (2) |
| C6—C5—H5 | 109.1 | O12—C19—C24 | 124.8 (2) |
| C4—C5—H5 | 109.1 | C20—C19—C24 | 120.3 (3) |
| C5—C6—H6A | 109.5 | C21—C20—C19 | 120.3 (3) |
| C5—C6—H6B | 109.5 | C21—C20—H20 | 119.8 |
| H6A—C6—H6B | 109.5 | C19—C20—H20 | 119.8 |
| C5—C6—H6C | 109.5 | C20—C21—C22 | 118.8 (2) |
| H6A—C6—H6C | 109.5 | C20—C21—H21 | 120.6 |
| H6B—C6—H6C | 109.5 | C22—C21—H21 | 120.6 |
| O5—C7—C12 | 115.2 (2) | C23—C22—C21 | 121.6 (3) |
| O5—C7—C8 | 124.7 (2) | C23—C22—N2 | 119.2 (3) |
| C12—C7—C8 | 120.1 (2) | C21—C22—N2 | 119.1 (3) |
| C9—C8—C7 | 119.2 (3) | C24—C23—C22 | 119.7 (3) |
| C9—C8—H8 | 120.4 | C24—C23—H23 | 120.1 |
| C7—C8—H8 | 120.4 | C22—C23—H23 | 120.1 |
| C10—C9—C8 | 119.7 (3) | C23—C24—C19 | 119.2 (3) |
| C10—C9—H9 | 120.2 | C23—C24—H24 | 120.4 |
| C8—C9—H9 | 120.2 | C19—C24—H24 | 120.4 |
| C9—C10—C11 | 121.7 (3) | ||
| C5—O1—C1—O5 | −57.9 (3) | C17—O8—C13—O12 | −61.2 (3) |
| C5—O1—C1—C2 | 60.3 (3) | C17—O8—C13—C14 | 57.4 (3) |
| C7—O5—C1—O1 | −56.9 (3) | C19—O12—C13—O8 | −70.4 (3) |
| C7—O5—C1—C2 | −179.1 (2) | C19—O12—C13—C14 | 167.2 (2) |
| O1—C1—C2—O2 | 65.7 (3) | O8—C13—C14—O9 | 65.8 (3) |
| O5—C1—C2—O2 | −172.55 (19) | O12—C13—C14—O9 | −171.1 (2) |
| O1—C1—C2—C3 | −53.0 (3) | O8—C13—C14—C15 | −53.4 (3) |
| O5—C1—C2—C3 | 68.7 (2) | O12—C13—C14—C15 | 69.8 (3) |
| O2—C2—C3—O3 | 51.8 (3) | O9—C14—C15—O10 | 59.1 (3) |
| C1—C2—C3—O3 | 170.7 (2) | C13—C14—C15—O10 | 178.1 (2) |
| O2—C2—C3—C4 | −69.2 (2) | O9—C14—C15—C16 | −64.5 (3) |
| C1—C2—C3—C4 | 49.7 (3) | C13—C14—C15—C16 | 54.4 (3) |
| O3—C3—C4—O4 | 62.8 (2) | O10—C15—C16—O11 | 62.7 (3) |
| C2—C3—C4—O4 | −176.03 (18) | C14—C15—C16—O11 | −176.24 (19) |
| O3—C3—C4—C5 | −173.46 (19) | O10—C15—C16—C17 | −179.1 (2) |
| C2—C3—C4—C5 | −52.3 (3) | C14—C15—C16—C17 | −58.1 (3) |
| C1—O1—C5—C6 | 177.2 (2) | C13—O8—C17—C18 | 177.8 (2) |
| C1—O1—C5—C4 | −59.7 (2) | C13—O8—C17—C16 | −59.2 (3) |
| O4—C4—C5—O1 | 178.34 (19) | O11—C16—C17—O8 | 178.5 (2) |
| C3—C4—C5—O1 | 54.7 (2) | C15—C16—C17—O8 | 57.9 (3) |
| O4—C4—C5—C6 | −62.5 (3) | O11—C16—C17—C18 | −62.4 (3) |
| C3—C4—C5—C6 | 173.8 (2) | C15—C16—C17—C18 | 177.0 (2) |
| C1—O5—C7—C12 | 172.6 (2) | C13—O12—C19—C20 | −161.3 (2) |
| C1—O5—C7—C8 | −8.9 (4) | C13—O12—C19—C24 | 19.7 (4) |
| O5—C7—C8—C9 | −179.0 (3) | O12—C19—C20—C21 | −179.2 (2) |
| C12—C7—C8—C9 | −0.6 (4) | C24—C19—C20—C21 | −0.2 (4) |
| C7—C8—C9—C10 | −1.1 (4) | C19—C20—C21—C22 | 0.3 (4) |
| C8—C9—C10—C11 | 1.7 (5) | C20—C21—C22—C23 | −0.2 (4) |
| C8—C9—C10—N1 | −178.5 (3) | C20—C21—C22—N2 | 179.5 (3) |
| O6—N1—C10—C9 | −13.4 (4) | O14—N2—C22—C23 | −0.8 (5) |
| O7—N1—C10—C9 | 167.3 (3) | O13—N2—C22—C23 | −179.8 (3) |
| O6—N1—C10—C11 | 166.4 (3) | O14—N2—C22—C21 | 179.5 (4) |
| O7—N1—C10—C11 | −13.0 (4) | O13—N2—C22—C21 | 0.5 (4) |
| C9—C10—C11—C12 | −0.6 (4) | C21—C22—C23—C24 | 0.0 (5) |
| N1—C10—C11—C12 | 179.6 (3) | N2—C22—C23—C24 | −179.7 (3) |
| C10—C11—C12—C7 | −1.1 (4) | C22—C23—C24—C19 | 0.1 (4) |
| O5—C7—C12—C11 | −179.7 (3) | O12—C19—C24—C23 | 179.0 (3) |
| C8—C7—C12—C11 | 1.7 (4) | C20—C19—C24—C23 | 0.1 (4) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2A···O15i | 0.87 (4) | 1.83 (4) | 2.697 (3) | 171 (4) |
| O3—H3A···O4ii | 0.87 (4) | 1.78 (4) | 2.652 (3) | 179 (3) |
| O4—H4A···O10 | 0.829 (19) | 1.98 (2) | 2.799 (3) | 168 (3) |
| O9—H9A···O11iii | 0.80 (4) | 1.96 (4) | 2.724 (3) | 161 (3) |
| O10—H10···O3ii | 0.828 (19) | 2.18 (2) | 2.993 (3) | 166 (3) |
| O11—H11A···O3ii | 0.816 (19) | 1.92 (2) | 2.668 (3) | 153 (3) |
| O15—H15A···O9 | 0.89 (2) | 2.04 (2) | 2.909 (3) | 165 (5) |
| O15—H15B···O2ii | 0.88 (2) | 1.96 (2) | 2.820 (3) | 167 (5) |
| Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1; (iii) x, y+1, z. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2A···O15i | 0.87 (4) | 1.83 (4) | 2.697 (3) | 171 (4) |
| O3—H3A···O4ii | 0.87 (4) | 1.78 (4) | 2.652 (3) | 179 (3) |
| O4—H4A···O10 | 0.829 (19) | 1.98 (2) | 2.799 (3) | 168 (3) |
| O9—H9A···O11iii | 0.80 (4) | 1.96 (4) | 2.724 (3) | 161 (3) |
| O10—H10···O3ii | 0.828 (19) | 2.18 (2) | 2.993 (3) | 166 (3) |
| O11—H11A···O3ii | 0.816 (19) | 1.92 (2) | 2.668 (3) | 153 (3) |
| O15—H15A···O9 | 0.89 (2) | 2.04 (2) | 2.909 (3) | 165 (5) |
| O15—H15B···O2ii | 0.88 (2) | 1.96 (2) | 2.820 (3) | 167 (5) |
| Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1; (iii) x, y+1, z. |
The X-ray data were collected at Shanghai Institute of Organic Chemistry with the kind help of Dr Jie Sun. Financial support from the Shanghai Rizing Star Program (grant No. 06QA14018), Shanghai Pujiang Program (grant No. 05PJ14315), Natural Science Foundation of Shanghai (grant No. 04ZR14042) and DAXIA Science Research Foundation of East China Normal University (grant No. KY2005–017) is gratefully acknowledged
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Para-nitrophenyl-α-L-rhamnoside is an important substrate in the studies on α-L-rhamnosidase, for its chromogenic property of the released para-nitrophenol (Garegg et al., 1978). It also serves as synthetic intermediate for glycosidic compounds (Martearena et al., 2003).
In order to develop a greener synthetic method, a series of approaches have been carried out in this lab. A fairly convenient route was found finally, in which the title compound was synthesized in only two steps. First, L-rhamnose (1) was acetylated and chlorinated to yield 2,3,4-tri-O-acetyl-α-L-rhamnopyranosyl chloride (2) in the presence of acetyl chloride; then it was converted to the target molecule (3) in the condition of phase transfer catalyst (Scheme 1). The synthetic route was more concise compared with published methods (Garegg & Norberg, 1983). Additionally, the bioactivity of the synthetic compound was confirmed by enzymatic assay (Nishio et al., 2004)
Suitable crystals of target product were obtained by slow crystallization from 95% ethanol. The crystal structure was determined in order to ascertain its stereochemistry and solid-state conformation. These data are consistent with the proton and carbon NMR studies. Due to the absence of heavy atoms, refinement of the Flack parameter was not possible, and the absolute configurations could not be determined directly. Instead, they were assigned based on the knowledge of stereochemistry of the synthetic precursors and the mechanisms of synthesis. The crystal of rhamnoside has two molecules and one water molecule in the independent part of the unit cell. The configuration, conformation and atom numbering are shown in Fig. 1.
Similar to the known structures of the nitrophenyl glycopyranosides, the analyzed rhamnopyranoside (3) crystallizes in the P 21 space group. Besides, one of the nitro groups is slightly rotated with respect to the phenyl fragments. The angles between the best planes of the phenyl ring and the nitro groups are 13.3° and 0.5°, respectively. This finding partly supports the earlier opinion that the nitro group does not conjugate effectively with the benzene ring (Temeriusz et al., 2005). The sugar moieties adopt 4C1 conformations. Fig. 2 shows the intermolecular interactions in the crystal lattice. The crystal structure of (3) consists of molecular sheets lying perpendicular to the b axis (Fig. 2), in which the molecules are linked by short hydrogen bonds (Table 1).
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