supplementary materials


hb2700 scheme

Acta Cryst. (2008). E64, o674    [ doi:10.1107/S1600536808005916 ]

Bis(benzimidazolium) naphthalene-1,5-disulfonate trihydrate

Z.-L. Wang, L.-Y. Jin and L.-H. Wei

Abstract top

The title compound, 2C7H7N2+·C10H6O6S22-·3H2O, consists of two crystallographically independent benzimidazolium cations, two independent naphthalene-1,5-disulfonate dianions (both generated by inversion) and three water molecules. These components construct an infinite three-dimensional framework in the crystal structure via O-H...O and N-H...O hydrogen bonds.

Comment top

This work continues our previous synthetic and structural studies of supramolecular interactions in aromatic molecular salts and adducts (Wang & Wei, 2007). Herein we report the structure of the title salt, (I).

The title compound (I) contains two independent benzimidazolium cations, two naphthalene-1,5-disulfonate dianions and three water molecules (Fig. 1). Each of the dianions occupies a special position on an inversion centre. Therefore, the asymmetric unit of the crystal structure is composed of two half naphthalene-1,5-disulfonate dianions, two benzimidazolium cations and three water molecules.

These ions and molecules are finally organized into an infinite three-dimensional framework through N—H···O and O—H···O hydrogen bonds (Fig. 2 and Table 1).

Related literature top

For related literature, see: Wang & Wei (2007).

Experimental top

A 5-ml ethanol solution of benzimidazole (1.00 mmol, 0.118 g) was added to an aqueous solution (25 ml) of naphthalene-1,5-disulfonic acid (0.50 mmol, 0.15 g). The mixture was stirred for 10 minutes at 373 K. The solution was filtered, and the filtrate was allowed to stand at room temperature. After several days, colourless blocks of (I) were recovered.

Refinement top

The H atoms bonded to N and O were located in a difference map and refined with distance restraints [N—H = 0.90 (1) Å, water O—H = 0.85 (1)Å and H···H = 1.34 (1) Å]; their Uiso values were freely refined.

The C-bound H atoms were positioned geometrically (C—H = 0.93 Å) and refined as riding with Uiso(H) = 1.2Ueq(C).

Computing details top

Data collection: SMART (Bruker, 2001); cell refinement: SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: PLATON (Spek, 2003).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I). Displacement ellipsoids for non-H atoms are drawn at the 30% probability level. Hydrogen bonds are shown as dashed lines. Unlabeled atoms in the C8 anion are related to labeled atoms by (1 - x, 1 - y, 1 - z). Unlabeled atoms in the C20 anion are related to labeled atoms by (1 - x, 1 - y, -z).
[Figure 2] Fig. 2. The crystal packing of (I). Hydrogen bonds are shown as dashed lines. For clarity, H atoms not involved in hydrogen bonds are omitted.
Bis(benzimidazolium) naphthalene-1,5-disulfonate trihydrate top
Crystal data top
2C7H7N2+·C10H6O6S22–·3H2OZ = 2
Mr = 578.61F000 = 604
Triclinic, P1Dx = 1.437 Mg m3
Hall symbol: -P 1Mo Kα radiation
λ = 0.71073 Å
a = 8.372 (4) ÅCell parameters from 3010 reflections
b = 9.889 (5) Åθ = 2.5–28.2º
c = 17.044 (8) ŵ = 0.26 mm1
α = 80.914 (8)ºT = 296 (2) K
β = 87.557 (9)ºBlock, colourless
γ = 73.641 (8)º0.15 × 0.12 × 0.04 mm
V = 1337.0 (11) Å3
Data collection top
Bruker SMART APEX CCD
diffractometer
4670 independent reflections
Radiation source: fine-focus sealed tube3494 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 296(2) Kθmax = 25.0º
ω scansθmin = 2.2º
Absorption correction: multi-scan
(SADABS; Bruker, 2001)
h = 9→6
Tmin = 0.962, Tmax = 0.990k = 11→10
6891 measured reflectionsl = 20→20
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difmap and geom
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of
independent and constrained refinement
wR(F2) = 0.110  w = 1/[σ2(Fo2) + (0.0559P)2 + 0.0198P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4670 reflectionsΔρmax = 0.30 e Å3
392 parametersΔρmin = 0.33 e Å3
37 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Crystal data top
2C7H7N2+·C10H6O6S22–·3H2Oγ = 73.641 (8)º
Mr = 578.61V = 1337.0 (11) Å3
Triclinic, P1Z = 2
a = 8.372 (4) ÅMo Kα
b = 9.889 (5) ŵ = 0.26 mm1
c = 17.044 (8) ÅT = 296 (2) K
α = 80.914 (8)º0.15 × 0.12 × 0.04 mm
β = 87.557 (9)º
Data collection top
Bruker SMART APEX CCD
diffractometer
4670 independent reflections
Absorption correction: multi-scan
(SADABS; Bruker, 2001)
3494 reflections with I > 2σ(I)
Tmin = 0.962, Tmax = 0.990Rint = 0.020
6891 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.04337 restraints
wR(F2) = 0.110H atoms treated by a mixture of
independent and constrained refinement
S = 1.06Δρmax = 0.30 e Å3
4670 reflectionsΔρmin = 0.33 e Å3
392 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S10.75176 (8)0.65881 (6)0.37087 (4)0.04129 (19)
S20.39100 (7)0.25493 (6)0.14588 (3)0.03710 (17)
N10.8368 (3)0.0653 (2)1.09595 (14)0.0502 (6)
H1A0.794 (4)0.007 (2)1.1155 (19)0.098 (12)*
N20.9885 (3)0.2131 (2)1.08427 (15)0.0505 (6)
H2A1.065 (3)0.253 (3)1.0965 (18)0.082 (11)*
N30.0749 (3)0.7339 (2)0.48285 (14)0.0460 (5)
H3A0.032 (3)0.670 (2)0.4660 (15)0.063 (9)*
N40.1689 (3)0.8418 (2)0.56460 (12)0.0432 (5)
H4A0.192 (3)0.865 (3)0.6108 (9)0.056 (8)*
O10.7659 (2)0.65613 (18)0.28505 (10)0.0554 (5)
O20.6945 (2)0.80262 (17)0.39064 (11)0.0571 (5)
O30.9056 (2)0.57458 (17)0.41288 (10)0.0473 (4)
O40.21223 (19)0.33257 (17)0.14166 (10)0.0457 (4)
O50.4281 (2)0.13448 (16)0.10230 (10)0.0490 (5)
O60.4518 (2)0.21705 (18)0.22760 (10)0.0545 (5)
O70.6702 (3)0.8721 (2)0.15255 (12)0.0636 (6)
H7A0.695 (3)0.822 (3)0.1982 (9)0.072 (5)*
H7B0.575 (2)0.928 (3)0.1601 (16)0.096 (14)*
O80.7493 (3)0.0547 (2)0.30528 (12)0.0573 (5)
H8A0.733 (3)0.0213 (17)0.3299 (15)0.067 (5)*
H8B0.657 (2)0.102 (3)0.283 (2)0.130 (17)*
O90.0253 (4)0.6345 (3)0.73328 (16)0.0971 (8)
H9A0.066 (2)0.618 (3)0.719 (2)0.081 (5)*
H9B0.089 (3)0.5484 (16)0.743 (2)0.101 (6)*
C10.9359 (3)0.1177 (3)1.13375 (17)0.0546 (7)
H10.96410.09121.18730.065*
C20.8228 (3)0.1305 (2)1.01695 (16)0.0421 (6)
C30.7326 (3)0.1173 (3)0.95341 (18)0.0548 (7)
H30.66750.05410.95850.066*
C40.7446 (4)0.2034 (3)0.88195 (18)0.0619 (8)
H40.68610.19750.83800.074*
C50.8424 (4)0.2990 (3)0.87418 (18)0.0626 (8)
H50.84680.35470.82520.075*
C60.9320 (3)0.3128 (3)0.93678 (17)0.0532 (7)
H60.99670.37630.93140.064*
C70.9205 (3)0.2262 (2)1.00908 (16)0.0428 (6)
C80.4007 (3)0.4475 (3)0.37232 (15)0.0514 (7)
H80.34770.41860.33380.062*
C90.5171 (3)0.5243 (3)0.34934 (15)0.0455 (6)
H90.54100.54520.29570.055*
C100.5963 (3)0.5689 (2)0.40503 (13)0.0360 (5)
C110.5595 (3)0.5398 (2)0.48859 (13)0.0348 (5)
C120.6357 (3)0.5851 (3)0.54888 (14)0.0442 (6)
H120.71140.63780.53460.053*
C130.0892 (3)0.7450 (3)0.55844 (16)0.0478 (7)
H130.04930.69270.60110.057*
C140.1487 (3)0.8290 (2)0.43592 (14)0.0392 (6)
C150.1657 (3)0.8615 (3)0.35337 (16)0.0541 (7)
H150.12640.81540.31810.065*
C160.2444 (4)0.9660 (3)0.32755 (17)0.0620 (8)
H160.25840.99070.27330.074*
C170.3036 (3)1.0360 (3)0.38033 (18)0.0578 (8)
H170.35521.10600.36010.069*
C180.2877 (3)1.0043 (3)0.46113 (16)0.0477 (6)
H180.32741.05070.49600.057*
C190.2086 (3)0.8982 (2)0.48839 (14)0.0369 (6)
C200.6767 (3)0.5287 (2)0.11047 (14)0.0394 (6)
H200.74860.55480.14140.047*
C210.6018 (3)0.4208 (2)0.14309 (13)0.0357 (5)
H210.62490.37640.19530.043*
C220.4946 (3)0.3809 (2)0.09785 (13)0.0308 (5)
C230.4614 (3)0.4453 (2)0.01605 (12)0.0288 (5)
C240.3560 (3)0.4050 (2)0.03388 (13)0.0353 (5)
H240.30840.33230.01390.042*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S10.0484 (4)0.0338 (3)0.0428 (4)0.0151 (3)0.0003 (3)0.0022 (3)
S20.0385 (4)0.0360 (3)0.0376 (3)0.0162 (3)0.0002 (3)0.0027 (3)
N10.0443 (13)0.0410 (13)0.0639 (16)0.0139 (11)0.0030 (11)0.0011 (11)
N20.0383 (13)0.0498 (14)0.0660 (16)0.0161 (11)0.0060 (11)0.0082 (12)
N30.0469 (13)0.0372 (12)0.0571 (15)0.0157 (10)0.0011 (11)0.0087 (11)
N40.0488 (13)0.0396 (12)0.0397 (13)0.0117 (10)0.0042 (10)0.0018 (10)
O10.0689 (13)0.0589 (12)0.0399 (10)0.0246 (10)0.0042 (9)0.0003 (9)
O20.0714 (13)0.0312 (9)0.0693 (13)0.0159 (9)0.0042 (10)0.0072 (9)
O30.0444 (10)0.0422 (10)0.0567 (11)0.0170 (8)0.0044 (8)0.0020 (8)
O40.0346 (10)0.0478 (10)0.0541 (11)0.0140 (8)0.0058 (8)0.0033 (8)
O50.0555 (11)0.0317 (9)0.0634 (12)0.0180 (8)0.0009 (9)0.0069 (8)
O60.0642 (12)0.0609 (12)0.0395 (10)0.0306 (10)0.0067 (9)0.0153 (8)
O70.0655 (15)0.0497 (13)0.0740 (15)0.0202 (12)0.0078 (11)0.0045 (10)
O80.0676 (14)0.0493 (12)0.0582 (13)0.0246 (11)0.0130 (11)0.0009 (10)
O90.109 (2)0.0876 (17)0.0720 (16)0.0001 (16)0.0210 (16)0.0007 (14)
C10.0467 (17)0.0544 (17)0.0579 (18)0.0094 (14)0.0031 (14)0.0022 (14)
C20.0341 (14)0.0358 (14)0.0562 (17)0.0083 (11)0.0035 (12)0.0099 (12)
C30.0445 (16)0.0523 (17)0.074 (2)0.0178 (13)0.0072 (14)0.0234 (15)
C40.0578 (19)0.069 (2)0.061 (2)0.0145 (16)0.0041 (15)0.0214 (16)
C50.065 (2)0.0580 (19)0.0579 (19)0.0107 (16)0.0059 (16)0.0032 (15)
C60.0507 (17)0.0434 (15)0.0679 (19)0.0184 (13)0.0076 (15)0.0078 (14)
C70.0331 (14)0.0369 (14)0.0585 (17)0.0084 (11)0.0032 (12)0.0112 (12)
C80.0587 (17)0.0617 (17)0.0434 (16)0.0275 (15)0.0076 (13)0.0147 (13)
C90.0541 (16)0.0511 (15)0.0341 (13)0.0175 (13)0.0024 (12)0.0087 (12)
C100.0384 (14)0.0325 (12)0.0363 (13)0.0083 (10)0.0013 (11)0.0054 (10)
C110.0360 (13)0.0296 (12)0.0400 (13)0.0095 (10)0.0027 (10)0.0074 (10)
C120.0474 (15)0.0487 (15)0.0441 (15)0.0229 (13)0.0004 (12)0.0118 (12)
C130.0498 (16)0.0364 (14)0.0532 (17)0.0104 (12)0.0041 (13)0.0014 (12)
C140.0350 (13)0.0358 (13)0.0450 (15)0.0080 (11)0.0009 (11)0.0047 (11)
C150.0566 (18)0.0572 (17)0.0471 (16)0.0108 (14)0.0004 (13)0.0130 (13)
C160.067 (2)0.068 (2)0.0452 (17)0.0154 (17)0.0105 (15)0.0002 (15)
C170.0546 (18)0.0537 (17)0.0628 (19)0.0193 (15)0.0120 (15)0.0027 (15)
C180.0410 (15)0.0443 (15)0.0606 (18)0.0165 (12)0.0006 (13)0.0074 (13)
C190.0326 (13)0.0336 (13)0.0413 (14)0.0058 (11)0.0028 (11)0.0020 (11)
C200.0410 (14)0.0432 (14)0.0399 (14)0.0193 (12)0.0071 (11)0.0076 (11)
C210.0407 (14)0.0372 (13)0.0294 (12)0.0121 (11)0.0022 (10)0.0030 (10)
C220.0314 (12)0.0278 (12)0.0329 (12)0.0079 (10)0.0016 (10)0.0045 (9)
C230.0276 (12)0.0273 (12)0.0319 (12)0.0078 (9)0.0037 (10)0.0062 (10)
C240.0381 (13)0.0343 (13)0.0379 (13)0.0185 (11)0.0001 (10)0.0030 (10)
Geometric parameters (Å, °) top
S1—O21.4558 (18)C5—H50.9300
S1—O11.4663 (19)C6—C71.402 (4)
S1—O31.4665 (18)C6—H60.9300
S1—C101.802 (2)C8—C12i1.373 (3)
S2—O51.4555 (18)C8—C91.404 (3)
S2—O61.4586 (18)C8—H80.9300
S2—O41.4761 (18)C9—C101.373 (3)
S2—C221.789 (2)C9—H90.9300
N1—C11.329 (3)C10—C111.445 (3)
N1—C21.393 (3)C11—C121.423 (3)
N1—H1A0.898 (10)C11—C11i1.442 (4)
N2—C11.322 (3)C12—C8i1.373 (3)
N2—C71.397 (3)C12—H120.9300
N2—H2A0.887 (18)C13—H130.9300
N3—C131.323 (3)C14—C191.394 (3)
N3—C141.398 (3)C14—C151.403 (3)
N3—H3A0.895 (10)C15—C161.382 (4)
N4—C131.330 (3)C15—H150.9300
N4—C191.396 (3)C16—C171.401 (4)
N4—H4A0.899 (10)C16—H160.9300
O7—H7A0.853 (10)C17—C181.373 (4)
O7—H7B0.852 (10)C17—H170.9300
O8—H8A0.844 (10)C18—C191.402 (3)
O8—H8B0.847 (10)C18—H180.9300
O9—H9A0.871 (10)C20—C24ii1.367 (3)
O9—H9B0.863 (10)C20—C211.414 (3)
C1—H10.9300C20—H200.9300
C2—C31.389 (4)C21—C221.382 (3)
C2—C71.403 (3)C21—H210.9300
C3—C41.389 (4)C22—C231.442 (3)
C3—H30.9300C23—C241.425 (3)
C4—C51.403 (4)C23—C23ii1.436 (4)
C4—H40.9300C24—C20ii1.367 (3)
C5—C61.375 (4)C24—H240.9300
O2—S1—O1113.02 (11)C9—C8—H8119.7
O2—S1—O3112.36 (11)C10—C9—C8120.8 (2)
O1—S1—O3111.76 (11)C10—C9—H9119.6
O2—S1—C10107.58 (11)C8—C9—H9119.6
O1—S1—C10105.71 (11)C9—C10—C11120.7 (2)
O3—S1—C10105.83 (10)C9—C10—S1117.92 (18)
O5—S2—O6113.58 (11)C11—C10—S1121.33 (17)
O5—S2—O4111.49 (10)C12—C11—C11i118.8 (3)
O6—S2—O4111.78 (11)C12—C11—C10123.3 (2)
O5—S2—C22108.32 (10)C11i—C11—C10117.9 (3)
O6—S2—C22106.06 (10)C8i—C12—C11121.2 (2)
O4—S2—C22105.02 (10)C8i—C12—H12119.4
C1—N1—C2108.7 (2)C11—C12—H12119.4
C1—N1—H1A127 (2)N3—C13—N4110.2 (2)
C2—N1—H1A124 (2)N3—C13—H13124.9
C1—N2—C7109.1 (2)N4—C13—H13124.9
C1—N2—H2A124 (2)C19—C14—N3106.2 (2)
C7—N2—H2A126 (2)C19—C14—C15121.6 (2)
C13—N3—C14108.8 (2)N3—C14—C15132.2 (2)
C13—N3—H3A124.4 (18)C16—C15—C14116.0 (3)
C14—N3—H3A126.6 (18)C16—C15—H15122.0
C13—N4—C19108.6 (2)C14—C15—H15122.0
C13—N4—H4A124.5 (17)C15—C16—C17122.3 (3)
C19—N4—H4A126.9 (17)C15—C16—H16118.9
H7A—O7—H7B103.0 (15)C17—C16—H16118.9
H8A—O8—H8B105.6 (15)C18—C17—C16121.9 (3)
H9A—O9—H9B100.1 (14)C18—C17—H17119.1
N2—C1—N1110.2 (3)C16—C17—H17119.1
N2—C1—H1124.9C17—C18—C19116.6 (3)
N1—C1—H1124.9C17—C18—H18121.7
C3—C2—N1132.0 (2)C19—C18—H18121.7
C3—C2—C7121.6 (2)C14—C19—N4106.3 (2)
N1—C2—C7106.4 (2)C14—C19—C18121.6 (2)
C4—C3—C2116.5 (3)N4—C19—C18132.1 (2)
C4—C3—H3121.8C24ii—C20—C21120.5 (2)
C2—C3—H3121.8C24ii—C20—H20119.7
C3—C4—C5121.9 (3)C21—C20—H20119.7
C3—C4—H4119.1C22—C21—C20120.4 (2)
C5—C4—H4119.1C22—C21—H21119.8
C6—C5—C4122.0 (3)C20—C21—H21119.8
C6—C5—H5119.0C21—C22—C23120.6 (2)
C4—C5—H5119.0C21—C22—S2117.66 (17)
C5—C6—C7116.4 (3)C23—C22—S2121.65 (16)
C5—C6—H6121.8C24—C23—C23ii118.9 (2)
C7—C6—H6121.8C24—C23—C22122.86 (19)
N2—C7—C6132.7 (2)C23ii—C23—C22118.2 (2)
N2—C7—C2105.7 (2)C20ii—C24—C23121.3 (2)
C6—C7—C2121.6 (3)C20ii—C24—H24119.3
C12i—C8—C9120.6 (2)C23—C24—H24119.3
C12i—C8—H8119.7
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z.
Hydrogen-bond geometry (Å, °) top
D—H···AD—HH···AD···AD—H···A
N1—H1A···O7iii0.898 (10)1.820 (12)2.708 (3)170 (3)
N2—H2A···O4iv0.887 (18)1.885 (19)2.762 (3)170 (3)
N3—H3A···O3v0.895 (10)1.937 (12)2.812 (3)166 (2)
N4—H4A···O8i0.899 (10)1.883 (11)2.771 (3)169 (2)
O7—H7B···O5vi0.852 (10)2.169 (19)2.839 (3)135 (2)
O8—H8A···O2vii0.844 (10)1.982 (10)2.826 (3)178 (3)
O7—H7A···O10.853 (10)1.999 (12)2.823 (3)162 (3)
O8—H8B···O60.847 (10)1.963 (10)2.809 (3)176 (3)
O9—H9B···O1i0.863 (10)2.157 (18)2.970 (3)157 (3)
Symmetry codes: (iii) x, y−1, z+1; (iv) x+1, y, z+1; (v) x−1, y, z; (i) −x+1, −y+1, −z+1; (vi) x, y+1, z; (vii) x, y−1, z.
Table 1
Hydrogen-bond geometry (Å, °)
top
D—H···AD—HH···AD···AD—H···A
N1—H1A···O7i0.898 (10)1.820 (12)2.708 (3)170 (3)
N2—H2A···O4ii0.887 (18)1.885 (19)2.762 (3)170 (3)
N3—H3A···O3iii0.895 (10)1.937 (12)2.812 (3)166 (2)
N4—H4A···O8iv0.899 (10)1.883 (11)2.771 (3)169 (2)
O7—H7B···O5v0.852 (10)2.169 (19)2.839 (3)135 (2)
O8—H8A···O2vi0.844 (10)1.982 (10)2.826 (3)178 (3)
O7—H7A···O10.853 (10)1.999 (12)2.823 (3)162 (3)
O8—H8B···O60.847 (10)1.963 (10)2.809 (3)176 (3)
O9—H9B···O1iv0.863 (10)2.157 (18)2.970 (3)157 (3)
Symmetry codes: (i) x, y−1, z+1; (ii) x+1, y, z+1; (iii) x−1, y, z; (iv) −x+1, −y+1, −z+1; (v) x, y+1, z; (vi) x, y−1, z.
references
References top

Bruker (2001). SAINT-Plus, SMART and SADABS. Bruker AXS, Inc., Madison, Wisconsin, USA.

Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122.

Spek, A. L. (2003). J. Appl. Cryst. 36, 7–13.

Wang, Z.-L. & Wei, L.-H. (2007). Acta Cryst. E63, o1448–o1449.